AT2G02370

SNARE associated Golgi protein (InterPro IPR015414)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0005719
Physical Location & Seq
Forward (+)
621058 .. 623526
2469 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G02370.2

Sequence Viewer

Length: 963 bp
ATGTCAAACCCATTGAAAGAGTCAAGAGAGGATATTGCAAATTCTACTCCTCACATGAGGGATAATGAGTATGTTCGGCTAGTTGTGGCTCATGAAGCCTCCCCAGCTGAAACCGTGTTGTCTCTATCGCAATCAGAGGTGCAGAGTAAGAAATTTATGTGGTGGTTAAAAGCTTTGGGAATATGTGCAGTTGCTCTCTTGCTTACGCTTGTTTTCGGAAAATGGGGAGTTCCGTTTGTGTTTCAAAAGGTTCTTATTCCAATTTTGCAATGGGAAGCAACTGCGTTTGGCCGTCCTATGCTCGCGATTGTCCTTGTTGTTTCCTTGGCTTTGTTTCCTGTGTTCTTGATACCTTCTGGTCCTTCCATGTGGTTAGCTGGGATGATTTTTGGTTATGGTCTCGGTTTTGTTATTATCATGGTTGGAACCACCATTGGCATGGTTCTCCCTTACTTAATCGGGCTTATGTTCCGTGATCGCCTCCATCAATGGTTAAAAAGATGGCCTCGTCAAGCTGCTGTTCTAAGACTAGCTGCAGAAGGAAGCTGGTTCCATCAATTCAGAGTCGTGGCAATCTTTCGGGTTTCCCCATTTCCTTACACGATTTTTAACTACGCAATCGTCGTGACAAGCATGAGATTCTGGCCTTACTTCTTCGGATCCATAGCAGGAATGATACCAGAAGCTTTCATCTACATTTACAGCGGTCGGTTAATCAGAACATTCGCAGATGTGCAATACGGACATCAACGTTTGACAACAGTGGAGATTGTGTACAATGTAATCTCCTTAGTCATTGCGGTTGTGACCACTGTTGCTTTCACTGTGTACGCGAAAAGAGCTTTGAGAGAGCTTCAAAACGCAGAAGCTAATGAAGATGAAGAAGTTCAAGTAAGAAAAGTGAGATTCGAGATGAAGAACGTAGTTCAGCACGAAGAAGATAATCATCAGCGTTTGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE_assoc

Protein Analysis

320

Amino Acids

36.59

Weight (kDa)

9.4

Isoelectric Point (pI)

34.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VTT_dom PF09335 117 - 237 4.2e-20 VTT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 305, 833
AciI CCGC 2 cut(s) 705, 800
AclI AACGTT 1 cut(s) 751
AclWI GGATC 2 cut(s) 654, 667
AcoI YGGCCR 1 cut(s) 289
AcsI RAATTY 2 cut(s) 40, 152
AfaI GTAC 2 cut(s) 776, 830
AgsI TTSAA 4 cut(s) 16, 245, 857, 890
Alw26I GTCTC 2 cut(s) 126, 404
AlwI GGATC 2 cut(s) 654, 667
AoxI GGCC 3 cut(s) 289, 503, 644
ApeKI GCWGC 2 cut(s) 515, 533
ApoI RAATTY 2 cut(s) 40, 152
Asp700I GAANNNNTTC 1 cut(s) 885
AspS9I GGNCC 1 cut(s) 359
AvaII GGWCC 1 cut(s) 359
BamHI GGATCC 1 cut(s) 659
BbvI GCAGC 2 cut(s) 502, 520
BccI CCATC 3 cut(s) 492, 495, 561
BceAI ACGGC 1 cut(s) 276
BcoDI GTCTC 2 cut(s) 126, 404
BfaI CTAG 2 cut(s) 80, 530
BfmI CTRYAG 1 cut(s) 534
BisI GCNGC 2 cut(s) 516, 534
BlsI GCNGC 2 cut(s) 517, 535
Bme18I GGWCC 1 cut(s) 359
BmgT120I GGNCC 1 cut(s) 359
BmiI GGNNCC 3 cut(s) 427, 551, 661
BsaBI GATNNNNATC 1 cut(s) 945
BsaI GGTCTC 1 cut(s) 404
BsaJI CCNNGG 1 cut(s) 324
BsaXI ACNNNNNCTCC 2 cut(s) 758, 788
Bse3DI GCAATG 2 cut(s) 275, 795
Bse8I GATNNNNATC 1 cut(s) 945
BseDI CCNNGG 1 cut(s) 324
BseGI GGATG 1 cut(s) 387
BseJI GATNNNNATC 1 cut(s) 945
BseMI GCAATG 2 cut(s) 275, 795
BseRI GAGGAG 1 cut(s) 39
BseXI GCAGC 2 cut(s) 502, 520
BseYI CCCAGC 2 cut(s) 103, 377
BsgI GTGCAG 2 cut(s) 161, 207
Bsh1236I CGCG 2 cut(s) 305, 833
Bsh1285I CGRYCG 1 cut(s) 709
BshFI GGCC 3 cut(s) 291, 505, 646
BsiEI CGRYCG 1 cut(s) 709
BsmAI GTCTC 2 cut(s) 126, 404
BsnI GGCC 3 cut(s) 291, 505, 646
Bso31I GGTCTC 1 cut(s) 404
Bsp1407I TGTACA 1 cut(s) 774
Bsp143I GATC 2 cut(s) 475, 659
Bsp68I TCGCGA 1 cut(s) 305
BspACI CCGC 2 cut(s) 705, 800
BspANI GGCC 3 cut(s) 291, 505, 646
BspFNI CGCG 2 cut(s) 305, 833
BspHI TCATGA 1 cut(s) 91
BspLI GGNNCC 3 cut(s) 427, 551, 661
BspMAI CTGCAG 1 cut(s) 538
BspPI GGATC 2 cut(s) 654, 667
BspTNI GGTCTC 1 cut(s) 404
BsrDI GCAATG 2 cut(s) 275, 795
BsrGI TGTACA 1 cut(s) 774
BssECI CCNNGG 1 cut(s) 324
BssMI GATC 2 cut(s) 475, 659
BssT1I CCWWGG 1 cut(s) 324
Bst4CI ACNGT 4 cut(s) 115, 763, 814, 826
BstAUI TGTACA 1 cut(s) 774
BstC8I GCNNGC 1 cut(s) 303
BstDEI CTNAG 3 cut(s) 524, 790, 960
BstF5I GGATG 1 cut(s) 387
BstFNI CGCG 2 cut(s) 305, 833
BstKTI GATC 2 cut(s) 478, 662
BstMAI GTCTC 2 cut(s) 126, 404
BstMBI GATC 2 cut(s) 475, 659
BstMCI CGRYCG 1 cut(s) 709
BstMWI GCNNNNNNNGC 3 cut(s) 95, 104, 839
BstSFI CTRYAG 1 cut(s) 534
BstUI CGCG 2 cut(s) 305, 833
BstV1I GCAGC 2 cut(s) 502, 520
BstX2I RGATCY 1 cut(s) 659
BstXI CCANNNNNNTGG 1 cut(s) 439
BstYI RGATCY 1 cut(s) 659
BsuRI GGCC 3 cut(s) 291, 505, 646
BtsCI GGATG 1 cut(s) 387
BtsIMutI CAGTG 3 cut(s) 768, 810, 822
BtuMI TCGCGA 1 cut(s) 305
Cac8I GCNNGC 1 cut(s) 303
CciI TCATGA 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 359
Csp6I GTAC 2 cut(s) 775, 829
CviAII CATG 6 cut(s) 55, 92, 367, 418, 439, 634
CviQI GTAC 2 cut(s) 775, 829
DdeI CTNAG 3 cut(s) 524, 790, 960
DpnI GATC 2 cut(s) 477, 661
DpnII GATC 2 cut(s) 475, 659
EaeI YGGCCR 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 324
Eco31I GGTCTC 1 cut(s) 404
Eco47I GGWCC 1 cut(s) 359
EcoT14I CCWWGG 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 324
FaeI CATG 6 cut(s) 58, 95, 370, 421, 442, 637
FatI CATG 6 cut(s) 54, 91, 366, 417, 438, 633
Fnu4HI GCNGC 2 cut(s) 516, 534
FokI GGATG 1 cut(s) 394
Fsp4HI GCNGC 2 cut(s) 516, 534
FspBI CTAG 2 cut(s) 80, 530
GluI GCNGC 2 cut(s) 516, 534
GsaI CCCAGC 2 cut(s) 107, 381
HaeIII GGCC 3 cut(s) 291, 505, 646
Hin1II CATG 6 cut(s) 58, 95, 370, 421, 442, 637
HindIII AAGCTT 2 cut(s) 171, 684
HinfI GANTC 4 cut(s) 20, 564, 639, 906
Hpy166II GTNNAC 2 cut(s) 775, 829
Hpy188I TCNGA 5 cut(s) 136, 218, 563, 659, 719
Hpy188III TCNNGA 6 cut(s) 24, 92, 304, 346, 625, 910
Hpy8I GTNNAC 2 cut(s) 775, 829
Hpy99I CGWCG 1 cut(s) 626
HpyAV CCTTC 3 cut(s) 363, 372, 533
HpyCH4III ACNGT 4 cut(s) 115, 763, 814, 826
HpyCH4IV ACGT 2 cut(s) 751, 921
HpyCH4V TGCA 6 cut(s) 38, 142, 188, 268, 536, 736
HpyF10VI GCNNNNNNNGC 3 cut(s) 95, 104, 839
HpyF3I CTNAG 3 cut(s) 524, 790, 960
HpySE526I ACGT 2 cut(s) 751, 921
Hsp92II CATG 6 cut(s) 58, 95, 370, 421, 442, 637
Kzo9I GATC 2 cut(s) 475, 659
LpnPI CCDG 8 cut(s) 117, 342, 351, 363, 532, 628, 654, 693
Lsp1109I GCAGC 2 cut(s) 502, 520
MaeI CTAG 2 cut(s) 80, 530
MaeII ACGT 2 cut(s) 751, 921
MaeIII GTNAC 2 cut(s) 625, 805
MalI GATC 2 cut(s) 477, 661
MboI GATC 2 cut(s) 475, 659
MboII GAAGA 6 cut(s) 646, 887, 893, 928, 947, 950
MflI RGATCY 1 cut(s) 659
MluCI AATT 4 cut(s) 40, 152, 261, 557
MlyI GAGTC 2 cut(s) 29, 573
MmeI TCCRAC 1 cut(s) 403
MnlI CCTC 7 cut(s) 22, 51, 60, 109, 130, 491, 516
MroXI GAANNNNTTC 1 cut(s) 885
MseI TTAA 5 cut(s) 167, 455, 494, 609, 713
MslI CAYNNNNRTG 1 cut(s) 437
MspA1I CMGCKG 2 cut(s) 107, 705
MvnI CGCG 2 cut(s) 305, 833
MwoI GCNNNNNNNGC 3 cut(s) 95, 104, 839
NdeII GATC 2 cut(s) 475, 659
NlaIII CATG 6 cut(s) 58, 95, 370, 421, 442, 637
NlaIV GGNNCC 3 cut(s) 427, 551, 661
NmuCI GTSAC 2 cut(s) 625, 805
NruI TCGCGA 1 cut(s) 305
PagI TCATGA 1 cut(s) 91
PcsI WCGNNNNNNNCGW 1 cut(s) 621
PdmI GAANNNNTTC 1 cut(s) 885
PfeI GAWTC 2 cut(s) 639, 906
PkrI GCNGC 2 cut(s) 517, 535
PleI GAGTC 2 cut(s) 28, 572
PpsI GAGTC 2 cut(s) 28, 572
Psp1406I AACGTT 1 cut(s) 751
PspFI CCCAGC 2 cut(s) 103, 377
PspN4I GGNNCC 3 cut(s) 427, 551, 661
PspPI GGNCC 1 cut(s) 359
PstI CTGCAG 1 cut(s) 538
PsuI RGATCY 1 cut(s) 659
PvuII CAGCTG 1 cut(s) 107
RruI TCGCGA 1 cut(s) 305
RsaI GTAC 2 cut(s) 776, 830
RsaNI GTAC 2 cut(s) 775, 829
RseI CAYNNNNRTG 1 cut(s) 437
SaqAI TTAA 5 cut(s) 167, 455, 494, 609, 713
SatI GCNGC 2 cut(s) 516, 534
Sau3AI GATC 2 cut(s) 475, 659
Sau96I GGNCC 1 cut(s) 359
SchI GAGTC 2 cut(s) 29, 573
SfcI CTRYAG 1 cut(s) 534
SinI GGWCC 1 cut(s) 359
SmiMI CAYNNNNRTG 1 cut(s) 437
Sse9I AATT 4 cut(s) 40, 152, 261, 557
SsiI CCGC 2 cut(s) 705, 800
SspMI CTAG 2 cut(s) 80, 530
StyI CCWWGG 1 cut(s) 324
TaaI ACNGT 4 cut(s) 115, 763, 814, 826
TaiI ACGT 2 cut(s) 754, 924
TaqI TCGA 1 cut(s) 909
TasI AATT 4 cut(s) 40, 152, 261, 557
TatI WGTACW 1 cut(s) 774
TfiI GAWTC 2 cut(s) 639, 906
Tru1I TTAA 5 cut(s) 167, 455, 494, 609, 713
Tru9I TTAA 5 cut(s) 167, 455, 494, 609, 713
TscAI CASTG 3 cut(s) 768, 817, 829
TseFI GTSAC 2 cut(s) 625, 805
TseI GCWGC 2 cut(s) 515, 533
Tsp45I GTSAC 2 cut(s) 625, 805
TspDTI ATGAA 5 cut(s) 108, 679, 888, 894, 929
TspGWI ACGGA 3 cut(s) 222, 461, 756
TspRI CASTG 3 cut(s) 768, 817, 829
VpaK11BI GGWCC 1 cut(s) 359
XapI RAATTY 2 cut(s) 40, 152
XcmI CCANNNNNNNNNTGG 2 cut(s) 267, 436
XmnI GAANNNNTTC 1 cut(s) 885
XspI CTAG 2 cut(s) 80, 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.