Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005719

Physical Location & Seq

Genomic Coordinates Reverse (-)

14284218 .. 14285783

Gene Structure 1566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0174100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGCTGTGTTTTATAGTGTTTCATATTACTGCTACAAGGGAGAATAATCTCAGTGATGATGCCATAGCTAAAGACATTAAACAGAATATGAATTTGGATATTTGGTTTTCGGTTTCCTATTCCAGGTCTTCAGAATGCTTTCTTGATTGTACTGTAGCAAATGGAAAAGTTTATGCTAATGATCATCTATCAGGTCAAAATAACCTGCCCATGCAAGGAGCCGACTGCAGGGAGCTCTTTGTTAGAGAGATGATGTGTGCCTCCCACATGCATAATGATAAAGCCCGCGCTTCAAGGGTGCTTGAGGTCTTGGAGAAATCCATTTGTTCACGTGCATCCAGAGACGCCAGTAATTGCAGCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SNARE_assoc

Protein Analysis

121

Amino Acids

13.63

Weight (kDa)

6.04

Isoelectric Point (pI)

36.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02370 AT2G02370 AT2G02370
fragaria_vesca	FvH4_5g27120 FvH4_5g27120
malus_domestica	MD15G1446000.v1.1
prunus_persica	Prupe.1G588100_v2.0.a1 Prupe.1G588100_v2.0.a1 Prupe.1G588100_v2.0.a1 Prupe.1G588100_v2.0.a1 Prupe.1G588100_v2.0.a1 Prupe.1G588100_v2.0.a1 Prupe.1G588100_v2.0.a1 Prupe.1G588100_v2.0.a1
pyrus_communis	pycom15g39280
rosa_chinensis	RchiOBHm_Chr7g0218111
rosa_laevigata	RLG00000002399
rosa_multiflora	Rmu_sc0003627.1_g000014 Rmu_sc0007270.1_g000002
rosa_roxburghii	Rroxscaffold_3G00241300
rosa_rugosa	Rorug07G0174100 Rorug07G0174200 Rorug07G0174200
rosa_samantha	Rh7AG316600 Rh7BG307700 Rh7CG333500 Rh7DG315500
rosa_wichuraiana	Rw7G026800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	213
AccII	CGCG	1 cut(s)	288
AciI	CCGC	1 cut(s)	286
AcsI	RAATTY	1 cut(s)	91
AcuI	CTGAAG	1 cut(s)	114
AcvI	CACGTG	1 cut(s)	332
AcyI	GRCGYC	1 cut(s)	345
AfaI	GTAC	1 cut(s)	151
AfiI	CCNNNNNNNGG	3 cut(s)	123, 215, 228
AgsI	TTSAA	1 cut(s)	294
AjnI	CCWGG	1 cut(s)	122
AjuI	GAANNNNNNNTTGG	2 cut(s)	77, 109
AluBI	AGCT	2 cut(s)	68, 235
AluI	AGCT	2 cut(s)	68, 235
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	1 cut(s)	336
AlwNI	CAGNNNCTG	1 cut(s)	363
ApeKI	GCWGC	1 cut(s)	357
ApoI	RAATTY	1 cut(s)	91
Asp700I	GAANNNNTTC	1 cut(s)	138
AspLEI	GCGC	1 cut(s)	290
BanII	GRGCYC	1 cut(s)	237
BbrPI	CACGTG	1 cut(s)	332
BbsI	GAAGAC	1 cut(s)	120
Bbv12I	GWGCWC	1 cut(s)	237
BciT130I	CCWGG	1 cut(s)	124
BclI	TGATCA	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	336
BfmI	CTRYAG	2 cut(s)	153, 226
BfuAI	ACCTGC	1 cut(s)	213
BisI	GCNGC	1 cut(s)	358
BlsI	GCNGC	1 cut(s)	359
Bme1390I	CCNGG	1 cut(s)	124
BmiI	GGNNCC	1 cut(s)	220
BmrFI	CCNGG	1 cut(s)	124
BmsI	GCATC	2 cut(s)	49, 344
BpiI	GAAGAC	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	323
BsaAI	YACGTR	1 cut(s)	332
BsaHI	GRCGYC	1 cut(s)	345
Bsc4I	CCNNNNNNNGG	3 cut(s)	123, 215, 228
Bse1I	ACTGG	1 cut(s)	348
BseBI	CCWGG	1 cut(s)	124
BseGI	GGATG	1 cut(s)	335
BseLI	CCNNNNNNNGG	3 cut(s)	123, 215, 228
BseMII	CTCAG	1 cut(s)	64
BseNI	ACTGG	1 cut(s)	348
Bsh1236I	CGCG	1 cut(s)	288
BsiHKAI	GWGCWC	1 cut(s)	237
BslI	CCNNNNNNNGG	3 cut(s)	123, 215, 228
BsmAI	GTCTC	1 cut(s)	336
BsmBI	CGTCTC	1 cut(s)	336
BsmI	GAATGC	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	1 cut(s)	181
BspACI	CCGC	1 cut(s)	286
BspCNI	CTCAG	1 cut(s)	63
BspFNI	CGCG	1 cut(s)	288
BspLI	GGNNCC	1 cut(s)	220
BspMAI	CTGCAG	1 cut(s)	230
BspMI	ACCTGC	1 cut(s)	213
BsrI	ACTGG	1 cut(s)	348
BssMI	GATC	1 cut(s)	181
BssNI	GRCGYC	1 cut(s)	345
Bst2UI	CCWGG	1 cut(s)	124
Bst4CI	ACNGT	1 cut(s)	154
BstACI	GRCGYC	1 cut(s)	345
BstBAI	YACGTR	1 cut(s)	332
BstC8I	GCNNGC	1 cut(s)	286
BstDEI	CTNAG	1 cut(s)	50
BstENI	CCTNNNNNAGG	1 cut(s)	121
BstF5I	GGATG	1 cut(s)	335
BstFNI	CGCG	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	290
BstKTI	GATC	1 cut(s)	184
BstMAI	GTCTC	1 cut(s)	336
BstMBI	GATC	1 cut(s)	181
BstNI	CCWGG	1 cut(s)	124
BstNSI	RCATGY	1 cut(s)	271
BstSCI	CCNGG	1 cut(s)	122
BstSFI	CTRYAG	2 cut(s)	153, 226
BstUI	CGCG	1 cut(s)	288
BstV2I	GAAGAC	1 cut(s)	120
BtsCI	GGATG	1 cut(s)	335
BtsIMutI	CAGTG	1 cut(s)	58
BveI	ACCTGC	1 cut(s)	213
Cac8I	GCNNGC	1 cut(s)	286
CaiI	CAGNNNCTG	1 cut(s)	363
CfoI	GCGC	1 cut(s)	290
CseI	GACGC	1 cut(s)	353
Csp6I	GTAC	1 cut(s)	150
CviAII	CATG	2 cut(s)	211, 268
CviJI	RGCY	4 cut(s)	68, 221, 235, 284
CviKI_1	RGCY	4 cut(s)	68, 221, 235, 284
CviQI	GTAC	1 cut(s)	150
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
Ecl136II	GAGCTC	1 cut(s)	235
Eco24I	GRGCYC	1 cut(s)	237
Eco53kI	GAGCTC	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	114
Eco72I	CACGTG	1 cut(s)	332
EcoICRI	GAGCTC	1 cut(s)	235
EcoNI	CCTNNNNNAGG	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	122
EcoT22I	ATGCAT	1 cut(s)	273
EcoT38I	GRGCYC	1 cut(s)	237
Esp3I	CGTCTC	1 cut(s)	336
FaeI	CATG	2 cut(s)	214, 271
FaiI	YATR	8 cut(s)	14, 24, 65, 89, 174, 212, 269, 273
FatI	CATG	2 cut(s)	210, 267
FauI	CCCGC	1 cut(s)	293
FbaI	TGATCA	1 cut(s)	181
Fnu4HI	GCNGC	1 cut(s)	358
FokI	GGATG	1 cut(s)	322
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	1 cut(s)	358
GlaI	GCGC	1 cut(s)	289
GluI	GCNGC	1 cut(s)	358
HgaI	GACGC	1 cut(s)	353
HhaI	GCGC	1 cut(s)	290
Hin1I	GRCGYC	1 cut(s)	345
Hin1II	CATG	2 cut(s)	214, 271
Hin6I	GCGC	1 cut(s)	288
HinP1I	GCGC	1 cut(s)	288
Hpy166II	GTNNAC	1 cut(s)	329
Hpy188I	TCNGA	2 cut(s)	133, 365
Hpy188III	TCNNGA	2 cut(s)	143, 339
Hpy8I	GTNNAC	1 cut(s)	329
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4IV	ACGT	1 cut(s)	331
HpyCH4V	TGCA	5 cut(s)	214, 228, 271, 335, 357
HpyF3I	CTNAG	1 cut(s)	50
HpySE526I	ACGT	1 cut(s)	331
Hsp92I	GRCGYC	1 cut(s)	345
Hsp92II	CATG	2 cut(s)	214, 271
HspAI	GCGC	1 cut(s)	288
Ksp22I	TGATCA	1 cut(s)	181
Kzo9I	GATC	1 cut(s)	181
LmnI	GCTCC	2 cut(s)	218, 232
LpnPI	CCDG	7 cut(s)	109, 136, 177, 214, 218, 352, 361
LweI	GCATC	2 cut(s)	49, 344
MaeII	ACGT	1 cut(s)	331
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MboII	GAAGA	1 cut(s)	120
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	2 cut(s)	91, 352
MnlI	CCTC	2 cut(s)	271, 298
Mph1103I	ATGCAT	1 cut(s)	273
MroXI	GAANNNNTTC	1 cut(s)	138
MseI	TTAA	1 cut(s)	78
MspR9I	CCNGG	1 cut(s)	124
Mva1269I	GAATGC	1 cut(s)	140
MvaI	CCWGG	1 cut(s)	124
MvnI	CGCG	1 cut(s)	288
NdeII	GATC	1 cut(s)	181
NlaIII	CATG	2 cut(s)	214, 271
NlaIV	GGNNCC	1 cut(s)	220
NsiI	ATGCAT	1 cut(s)	273
NspI	RCATGY	1 cut(s)	271
PctI	GAATGC	1 cut(s)	140
PdmI	GAANNNNTTC	1 cut(s)	138
PkrI	GCNGC	1 cut(s)	359
PmaCI	CACGTG	1 cut(s)	332
PmlI	CACGTG	1 cut(s)	332
Ppu21I	YACGTR	1 cut(s)	332
Psp124BI	GAGCTC	1 cut(s)	237
Psp6I	CCWGG	1 cut(s)	122
PspCI	CACGTG	1 cut(s)	332
PspGI	CCWGG	1 cut(s)	122
PspN4I	GGNNCC	1 cut(s)	220
PstI	CTGCAG	1 cut(s)	230
PstNI	CAGNNNCTG	1 cut(s)	363
RsaI	GTAC	1 cut(s)	151
RsaNI	GTAC	1 cut(s)	150
SacI	GAGCTC	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	1 cut(s)	358
Sau3AI	GATC	1 cut(s)	181
ScrFI	CCNGG	1 cut(s)	124
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	7 cut(s)	70, 128, 196, 207, 237, 309, 334
SfaNI	GCATC	2 cut(s)	49, 344
SfcI	CTRYAG	2 cut(s)	153, 226
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	2 cut(s)	91, 352
SsiI	CCGC	1 cut(s)	286
SstI	GAGCTC	1 cut(s)	237
StyD4I	CCNGG	1 cut(s)	122
TaaI	ACNGT	1 cut(s)	154
TaiI	ACGT	1 cut(s)	334
TasI	AATT	2 cut(s)	91, 352
TatI	WGTACW	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TscAI	CASTG	1 cut(s)	58
TseI	GCWGC	1 cut(s)	357
TspDTI	ATGAA	2 cut(s)	11, 104
TspRI	CASTG	1 cut(s)	58
XagI	CCTNNNNNAGG	1 cut(s)	121
XapI	RAATTY	1 cut(s)	91
XceI	RCATGY	1 cut(s)	271
XmnI	GAANNNNTTC	1 cut(s)	138
Zsp2I	ATGCAT	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.