FvH4_5g27120

SNARE associated Golgi protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0005719
Physical Location & Seq
Forward (+)
18398895 .. 18402657
3763 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g27120.t2

Sequence Viewer

Length: 957 bp
ATGATGAGCTCTTCTGAAGATTCAGAAAAGAATGCCAACTCAGTGCATCATGTGAGAGAAGACAGTGAATATGTCAGGCTGGTTATATCCAACGAAACAAACACATTAGAAGCAGATGTTTTACAGTCTCAATCAGAAGCAGGGGCTAAATCATTTTGGTGGTGGATTAAAGCCTTAGCCTTGTGCCTTGTCACCATTATATTGCTTCTCATTTTCTTGAAATGGGGGGTTCCATTTCTTTTTGAAAAGGTTCTGTTGCCAATAATGCGATGGGAAGCCACAGCCTTTGGCCGTCCAGTTCTTGCCCTTGTTCTCGTTGCTTCTCTGGCATTGTTCCCTGTGTTCTTCATTCCGTCTGGCCCTTCAATGTGGTTGGCTGGAATGATTTTTGGTTATGGCTTGGGATTTGTTATAATTATGGTTGGGACAACTATTGGGATGATCCTACCATATTTGATTGGTTTGTATTTCCGTGACCGCATCCATCAATGGTTAAAGAGATGGCCTCGAAATGCTGCAATGATTAGACTTGCTGGGGAAGGGAGTTGGCTCCATCAATTTCGAGTGGTTGCTCTCTTTAGGGTTTCACCCTTTCCATACACAATATTCAACTACGCGATCGTGGTCACAAGTATGAGATTTTGGCCCTACTTGTGGGGATCAATTGCTGGGATGATACCAGAAGCTTTTATTTACATCTACAGTGGTCGCTTATTAAGGACATTTGCGGATGTCAAGTATGGGAACTATCACTTAACCACAGTTGAGATTGTGTACAACATTCTATCCTTAATCGTTGCAATTGTAACCACCGTTGCTTTTACTGTTTATGCTAAAAATGCTTTAAATGAGCTAAAGAGGGCAGAGTCTAGTGGGGTGGAAGCAGCTGCTTCTGACCATACCAGCTTACAGATGGAAAAGCTTCCCCTTGAAAAGCCTCATATTTTTACGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE_assoc

Protein Analysis

319

Amino Acids

36.09

Weight (kDa)

8.85

Isoelectric Point (pI)

40.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VTT_dom PF09335 117 - 237 9.4e-21 VTT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 413
AccII CGCG 1 cut(s) 617
AciI CCGC 2 cut(s) 478, 728
AclWI GGATC 2 cut(s) 436, 667
AcoI YGGCCR 1 cut(s) 289
AcuI CTGAAG 1 cut(s) 36
AfaI GTAC 1 cut(s) 776
AfiI CCNNNNNNNGG 1 cut(s) 654
AgsI TTSAA 5 cut(s) 220, 245, 366, 610, 932
AluBI AGCT 6 cut(s) 9, 686, 853, 887, 906, 922
AluI AGCT 6 cut(s) 9, 686, 853, 887, 906, 922
Alw21I GWGCWC 1 cut(s) 11
Alw26I GTCTC 1 cut(s) 132
AlwI GGATC 2 cut(s) 436, 667
AoxI GGCC 4 cut(s) 289, 358, 503, 644
ApeKI GCWGC 3 cut(s) 515, 884, 887
Asp700I GAANNNNTTC 2 cut(s) 249, 921
AspS9I GGNCC 2 cut(s) 359, 645
AsuHPI GGTGA 2 cut(s) 184, 579
BanII GRGCYC 1 cut(s) 11
BbsI GAAGAC 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 11
BbvI GCAGC 3 cut(s) 502, 874, 896
BccI CCATC 5 cut(s) 264, 492, 495, 561, 907
BceAI ACGGC 1 cut(s) 276
BcoDI GTCTC 1 cut(s) 132
BfaI CTAG 1 cut(s) 870
BfmI CTRYAG 1 cut(s) 700
BisI GCNGC 3 cut(s) 516, 885, 888
BlsI GCNGC 3 cut(s) 517, 886, 889
BmgT120I GGNCC 2 cut(s) 359, 645
BmiI GGNNCC 2 cut(s) 231, 551
BmsI GCATC 2 cut(s) 55, 489
BpiI GAAGAC 1 cut(s) 66
BplI GAGNNNNNCTC 2 cut(s) 490, 522
Bpu10I CCTNAGC 1 cut(s) 175
Bsc4I CCNNNNNNNGG 1 cut(s) 654
Bse1I ACTGG 1 cut(s) 296
Bse3DI GCAATG 1 cut(s) 525
BseGI GGATG 4 cut(s) 444, 480, 678, 736
BseLI CCNNNNNNNGG 1 cut(s) 654
BseMI GCAATG 1 cut(s) 525
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 1 cut(s) 296
BseXI GCAGC 3 cut(s) 502, 874, 896
BseYI CCCAGC 2 cut(s) 533, 668
Bsh1236I CGCG 1 cut(s) 617
Bsh1285I CGRYCG 1 cut(s) 621
BshFI GGCC 4 cut(s) 291, 360, 505, 646
BsiEI CGRYCG 1 cut(s) 621
BsiHKAI GWGCWC 1 cut(s) 11
BslFI GGGAC 1 cut(s) 439
BslI CCNNNNNNNGG 1 cut(s) 654
BsmAI GTCTC 1 cut(s) 132
BsmFI GGGAC 1 cut(s) 439
BsmI GAATGC 1 cut(s) 37
BsnI GGCC 4 cut(s) 291, 360, 505, 646
Bsp1286I GDGCHC 1 cut(s) 11
Bsp1407I TGTACA 1 cut(s) 774
Bsp143I GATC 3 cut(s) 441, 618, 659
BspACI CCGC 2 cut(s) 478, 728
BspANI GGCC 4 cut(s) 291, 360, 505, 646
BspCNI CTCAG 1 cut(s) 53
BspFNI CGCG 1 cut(s) 617
BspLI GGNNCC 2 cut(s) 231, 551
BspPI GGATC 2 cut(s) 436, 667
BspQI GCTCTTC 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 525
BsrGI TGTACA 1 cut(s) 774
BsrI ACTGG 1 cut(s) 296
BssMI GATC 3 cut(s) 441, 618, 659
Bst4CI ACNGT 6 cut(s) 65, 126, 704, 763, 814, 826
Bst6I CTCTTC 1 cut(s) 16
BstAUI TGTACA 1 cut(s) 774
BstDEI CTNAG 2 cut(s) 40, 175
BstF5I GGATG 4 cut(s) 444, 480, 678, 736
BstFNI CGCG 1 cut(s) 617
BstKTI GATC 3 cut(s) 444, 621, 662
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 3 cut(s) 441, 618, 659
BstMCI CGRYCG 1 cut(s) 621
BstMWI GCNNNNNNNGC 3 cut(s) 265, 326, 839
BstSFI CTRYAG 1 cut(s) 700
BstUI CGCG 1 cut(s) 617
BstV1I GCAGC 3 cut(s) 502, 874, 896
BstV2I GAAGAC 1 cut(s) 66
BsuRI GGCC 4 cut(s) 291, 360, 505, 646
BtgZI GCGATG 1 cut(s) 283
BtsCI GGATG 4 cut(s) 444, 480, 678, 736
BtsIMutI CAGTG 3 cut(s) 48, 70, 709
Cfr13I GGNCC 2 cut(s) 359, 645
Csp6I GTAC 1 cut(s) 775
CspCI CAANNNNNGTGG 2 cut(s) 268, 303
CviAII CATG 1 cut(s) 50
CviQI GTAC 1 cut(s) 775
DdeI CTNAG 2 cut(s) 40, 175
DpnI GATC 3 cut(s) 443, 620, 661
DpnII GATC 3 cut(s) 441, 618, 659
DraI TTTAAA 1 cut(s) 846
EaeI YGGCCR 1 cut(s) 289
Eam1104I CTCTTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 16
Ecl136II GAGCTC 1 cut(s) 9
Eco24I GRGCYC 1 cut(s) 11
Eco53kI GAGCTC 1 cut(s) 9
Eco57I CTGAAG 1 cut(s) 36
EcoICRI GAGCTC 1 cut(s) 9
EcoT38I GRGCYC 1 cut(s) 11
FaeI CATG 1 cut(s) 53
FaqI GGGAC 1 cut(s) 439
FatI CATG 1 cut(s) 49
Fnu4HI GCNGC 3 cut(s) 516, 885, 888
FokI GGATG 4 cut(s) 451, 467, 685, 743
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 3 cut(s) 516, 885, 888
FspBI CTAG 1 cut(s) 870
GluI GCNGC 3 cut(s) 516, 885, 888
GsaI CCCAGC 2 cut(s) 537, 672
HaeIII GGCC 4 cut(s) 291, 360, 505, 646
Hin1II CATG 1 cut(s) 53
HindIII AAGCTT 2 cut(s) 684, 920
HinfI GANTC 2 cut(s) 20, 866
HphI GGTGA 2 cut(s) 184, 579
Hpy166II GTNNAC 1 cut(s) 775
Hpy188I TCNGA 4 cut(s) 16, 25, 136, 895
Hpy188III TCNNGA 1 cut(s) 217
Hpy8I GTNNAC 1 cut(s) 775
HpyAV CCTTC 2 cut(s) 372, 533
HpyCH4III ACNGT 6 cut(s) 65, 126, 704, 763, 814, 826
HpyCH4IV ACGT 1 cut(s) 950
HpyCH4V TGCA 3 cut(s) 46, 518, 800
HpyF10VI GCNNNNNNNGC 3 cut(s) 265, 326, 839
HpyF3I CTNAG 2 cut(s) 40, 175
HpySE526I ACGT 1 cut(s) 950
Hsp92II CATG 1 cut(s) 53
Kzo9I GATC 3 cut(s) 441, 618, 659
LguI GCTCTTC 1 cut(s) 16
LmnI GCTCC 1 cut(s) 555
Lsp1109I GCAGC 3 cut(s) 502, 874, 896
LweI GCATC 2 cut(s) 55, 489
MaeI CTAG 1 cut(s) 870
MaeII ACGT 1 cut(s) 950
MaeIII GTNAC 4 cut(s) 190, 473, 625, 805
MalI GATC 3 cut(s) 443, 620, 661
MboI GATC 3 cut(s) 441, 618, 659
MboII GAAGA 4 cut(s) 3, 29, 71, 337
MfeI CAATTG 2 cut(s) 663, 801
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 4 cut(s) 414, 557, 663, 801
MlyI GAGTC 1 cut(s) 875
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 3 cut(s) 516, 852, 948
MroXI GAANNNNTTC 2 cut(s) 249, 921
MseI TTAA 6 cut(s) 168, 494, 716, 755, 791, 845
MslI CAYNNNNRTG 2 cut(s) 157, 632
MspA1I CMGCKG 1 cut(s) 887
MunI CAATTG 2 cut(s) 663, 801
Mva1269I GAATGC 1 cut(s) 37
MvnI CGCG 1 cut(s) 617
MwoI GCNNNNNNNGC 3 cut(s) 265, 326, 839
NdeII GATC 3 cut(s) 441, 618, 659
NlaIII CATG 1 cut(s) 53
NlaIV GGNNCC 2 cut(s) 231, 551
NmuCI GTSAC 3 cut(s) 190, 473, 625
PciSI GCTCTTC 1 cut(s) 16
PctI GAATGC 1 cut(s) 37
PdmI GAANNNNTTC 2 cut(s) 249, 921
PfeI GAWTC 1 cut(s) 20
PkrI GCNGC 3 cut(s) 517, 886, 889
Ple19I CGATCG 1 cut(s) 621
PleI GAGTC 1 cut(s) 874
PpsI GAGTC 1 cut(s) 874
PsiI TTATAA 1 cut(s) 413
Psp124BI GAGCTC 1 cut(s) 11
PspFI CCCAGC 2 cut(s) 533, 668
PspN4I GGNNCC 2 cut(s) 231, 551
PspPI GGNCC 2 cut(s) 359, 645
PvuI CGATCG 1 cut(s) 621
PvuII CAGCTG 1 cut(s) 887
RsaI GTAC 1 cut(s) 776
RsaNI GTAC 1 cut(s) 775
RseI CAYNNNNRTG 2 cut(s) 157, 632
SacI GAGCTC 1 cut(s) 11
SapI GCTCTTC 1 cut(s) 16
SaqAI TTAA 6 cut(s) 168, 494, 716, 755, 791, 845
SatI GCNGC 3 cut(s) 516, 885, 888
Sau3AI GATC 3 cut(s) 441, 618, 659
Sau96I GGNCC 2 cut(s) 359, 645
SchI GAGTC 1 cut(s) 875
SduI GDGCHC 1 cut(s) 11
SetI ASST 8 cut(s) 11, 252, 688, 855, 889, 908, 924, 953
SfaNI GCATC 2 cut(s) 55, 489
SfcI CTRYAG 1 cut(s) 700
SmiMI CAYNNNNRTG 2 cut(s) 157, 632
Sse9I AATT 4 cut(s) 414, 557, 663, 801
SsiI CCGC 2 cut(s) 478, 728
SspI AATATT 1 cut(s) 606
SspMI CTAG 1 cut(s) 870
SstI GAGCTC 1 cut(s) 11
TaaI ACNGT 6 cut(s) 65, 126, 704, 763, 814, 826
TaiI ACGT 1 cut(s) 953
TaqI TCGA 2 cut(s) 508, 562
TasI AATT 4 cut(s) 414, 557, 663, 801
TatI WGTACW 1 cut(s) 774
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 6 cut(s) 168, 494, 716, 755, 791, 845
Tru9I TTAA 6 cut(s) 168, 494, 716, 755, 791, 845
TscAI CASTG 3 cut(s) 48, 70, 709
TseFI GTSAC 3 cut(s) 190, 473, 625
TseI GCWGC 3 cut(s) 515, 884, 887
Tsp45I GTSAC 3 cut(s) 190, 473, 625
TspDTI ATGAA 1 cut(s) 337
TspGWI ACGGA 2 cut(s) 342, 461
TspRI CASTG 3 cut(s) 48, 70, 709
XcmI CCANNNNNNNNNTGG 2 cut(s) 267, 910
XmnI GAANNNNTTC 2 cut(s) 249, 921
XspI CTAG 1 cut(s) 870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.