Rroxscaffold_3G00241300

SNARE associated Golgi protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0005719
Physical Location & Seq
Reverse (-)
33544207 .. 33546119
1913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00241300.1

Sequence Viewer

Length: 852 bp
ATGATGAGCTCTTCTGAAGAGTCAGGAAAGAATGAAAATTCAGTGCATCATGTGAGAGAAGACAGTGAATATGTTAGGCTGGTTATATCCAACGAAACAAACACAGCAGAAGCAGATGTCTCCCAGCCTCAATCAGAAGCAGGGGTTCTGTTGCCAATAATGCGATGGGAAGCCACAGCCTTCGGCCGTCCAGTTCTTGCCATTGTTCTCGTTGCTTCTCTGGCATTGTTCCCTGTGTTCTTGATCCCTTCTGGCCCTTCCATGTGGTTGGCTGGAATGATTTTTGGTTATGGCTTCGGATTTGTTATAATCATGGTTGGAACAACTATTGGGATGATCCTACCATATTTGATTGGTCTGTATTTCCGCGACCGCATCCATCAATGGTTAAAGAGATGGCCTCGAAACGCTGCAATGATTAGACTTGCTGGGGAAGGGAGTTGGCTCCATCAATTTCGAGTGGTTGCTCTCTTTAGGGTTTCACCCTTTCCATACACAATTTTCAATTACGCGATCGTGGTTACAAGTATGAAATTTTGGCCCTACTTGTGGGGATCAATTGCTGGGATGGTGCCAGAAGCTTTTATTTACATCTACAGTGGTCGCTTAATAAGGACATTTGCGGATGTCAAGTATGGGAACTATCACATGACTACCGTGGAGATTGTATACAACACTCTATCCTTAATTGTTGCAATCGTAACCACAGTTGCTTTTACTGTTTATGCCAAAAATGCTTTGAATGAGCTGAAGAGGGCAGAGACTAGTGGTGTGGAAGCATCTGCTTCTGACCATATCAGCTTAGAGATGGAGAAGCTTCCACTTGAAAAACCGCATATTTTTACGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE_assoc

Protein Analysis

283

Amino Acids

31.84

Weight (kDa)

6.66

Isoelectric Point (pI)

38.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VTT_dom PF09335 82 - 202 1.1e-20 VTT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 308
AccB1I GGYRCC 1 cut(s) 571
AccI GTMKAC 1 cut(s) 669
AccII CGCG 2 cut(s) 369, 512
AciI CCGC 4 cut(s) 367, 373, 623, 833
AclWI GGATC 3 cut(s) 238, 331, 562
AcoI YGGCCR 1 cut(s) 184
AcsI RAATTY 2 cut(s) 37, 533
AcuI CTGAAG 2 cut(s) 36, 770
AfiI CCNNNNNNNGG 1 cut(s) 549
AgsI TTSAA 3 cut(s) 505, 742, 827
AhlI ACTAGT 1 cut(s) 764
AluBI AGCT 5 cut(s) 9, 581, 748, 801, 817
AluI AGCT 5 cut(s) 9, 581, 748, 801, 817
Alw21I GWGCWC 1 cut(s) 11
Alw26I GTCTC 2 cut(s) 124, 755
AlwI GGATC 3 cut(s) 238, 331, 562
AoxI GGCC 4 cut(s) 184, 253, 398, 539
ApeKI GCWGC 1 cut(s) 410
ApoI RAATTY 2 cut(s) 37, 533
AspS9I GGNCC 2 cut(s) 254, 540
AsuHPI GGTGA 1 cut(s) 474
BanI GGYRCC 1 cut(s) 571
BanII GRGCYC 1 cut(s) 11
BbsI GAAGAC 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 11
BbvI GCAGC 1 cut(s) 397
BccI CCATC 6 cut(s) 159, 387, 390, 456, 562, 802
BceAI ACGGC 1 cut(s) 171
BcoDI GTCTC 2 cut(s) 124, 755
BcuI ACTAGT 1 cut(s) 764
BfaI CTAG 1 cut(s) 765
BfmI CTRYAG 1 cut(s) 595
BisI GCNGC 1 cut(s) 411
BlsI GCNGC 1 cut(s) 412
BmgT120I GGNCC 2 cut(s) 254, 540
BmiI GGNNCC 2 cut(s) 446, 573
BmsI GCATC 3 cut(s) 55, 384, 788
BpiI GAAGAC 1 cut(s) 66
BplI GAGNNNNNCTC 2 cut(s) 385, 417
BsaJI CCNNGG 1 cut(s) 657
Bsc4I CCNNNNNNNGG 1 cut(s) 549
Bse1I ACTGG 1 cut(s) 191
Bse3DI GCAATG 1 cut(s) 420
BseDI CCNNGG 1 cut(s) 657
BseGI GGATG 4 cut(s) 339, 375, 573, 631
BseLI CCNNNNNNNGG 1 cut(s) 549
BseMI GCAATG 1 cut(s) 420
BseNI ACTGG 1 cut(s) 191
BseX3I CGGCCG 1 cut(s) 184
BseXI GCAGC 1 cut(s) 397
BseYI CCCAGC 3 cut(s) 123, 428, 563
Bsh1236I CGCG 2 cut(s) 369, 512
Bsh1285I CGRYCG 3 cut(s) 187, 373, 516
BshFI GGCC 4 cut(s) 186, 255, 400, 541
BshNI GGYRCC 1 cut(s) 571
BsiEI CGRYCG 3 cut(s) 187, 373, 516
BsiHKAI GWGCWC 1 cut(s) 11
BslI CCNNNNNNNGG 1 cut(s) 549
BsmAI GTCTC 2 cut(s) 124, 755
BsnI GGCC 4 cut(s) 186, 255, 400, 541
Bsp1286I GDGCHC 1 cut(s) 11
Bsp143I GATC 4 cut(s) 243, 336, 513, 554
BspACI CCGC 4 cut(s) 367, 373, 623, 833
BspANI GGCC 4 cut(s) 186, 255, 400, 541
BspFNI CGCG 2 cut(s) 369, 512
BspLI GGNNCC 2 cut(s) 446, 573
BspPI GGATC 3 cut(s) 238, 331, 562
BspQI GCTCTTC 1 cut(s) 16
BspT107I GGYRCC 1 cut(s) 571
BsrDI GCAATG 1 cut(s) 420
BsrI ACTGG 1 cut(s) 191
BssECI CCNNGG 1 cut(s) 657
BssMI GATC 4 cut(s) 243, 336, 513, 554
BssNAI GTATAC 1 cut(s) 670
Bst1107I GTATAC 1 cut(s) 670
Bst4CI ACNGT 5 cut(s) 65, 599, 658, 709, 721
Bst6I CTCTTC 3 cut(s) 12, 16, 746
BstDEI CTNAG 1 cut(s) 802
BstDSI CCRYGG 1 cut(s) 657
BstF5I GGATG 4 cut(s) 339, 375, 573, 631
BstFNI CGCG 2 cut(s) 369, 512
BstKTI GATC 4 cut(s) 246, 339, 516, 557
BstMAI GTCTC 2 cut(s) 124, 755
BstMBI GATC 4 cut(s) 243, 336, 513, 554
BstMCI CGRYCG 3 cut(s) 187, 373, 516
BstMWI GCNNNNNNNGC 3 cut(s) 160, 221, 734
BstSFI CTRYAG 1 cut(s) 595
BstUI CGCG 2 cut(s) 369, 512
BstV1I GCAGC 1 cut(s) 397
BstV2I GAAGAC 1 cut(s) 66
BstXI CCANNNNNNTGG 1 cut(s) 268
BstZ17I GTATAC 1 cut(s) 670
BstZI CGGCCG 1 cut(s) 184
BsuRI GGCC 4 cut(s) 186, 255, 400, 541
BtgI CCRYGG 1 cut(s) 657
BtgZI GCGATG 1 cut(s) 178
BtsCI GGATG 4 cut(s) 339, 375, 573, 631
BtsIMutI CAGTG 3 cut(s) 48, 70, 604
Cfr13I GGNCC 2 cut(s) 254, 540
CviAII CATG 4 cut(s) 50, 262, 313, 649
DdeI CTNAG 1 cut(s) 802
DpnI GATC 4 cut(s) 245, 338, 515, 556
DpnII GATC 4 cut(s) 243, 336, 513, 554
EaeI YGGCCR 1 cut(s) 184
EagI CGGCCG 1 cut(s) 184
Eam1104I CTCTTC 3 cut(s) 12, 16, 746
EarI CTCTTC 3 cut(s) 12, 16, 746
Ecl136II GAGCTC 1 cut(s) 9
EclXI CGGCCG 1 cut(s) 184
Eco24I GRGCYC 1 cut(s) 11
Eco52I CGGCCG 1 cut(s) 184
Eco53kI GAGCTC 1 cut(s) 9
Eco57I CTGAAG 2 cut(s) 36, 770
EcoICRI GAGCTC 1 cut(s) 9
EcoT38I GRGCYC 1 cut(s) 11
FaeI CATG 4 cut(s) 53, 265, 316, 652
FatI CATG 4 cut(s) 49, 261, 312, 648
FblI GTMKAC 1 cut(s) 669
Fnu4HI GCNGC 1 cut(s) 411
FokI GGATG 4 cut(s) 346, 362, 580, 638
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 1 cut(s) 411
FspBI CTAG 1 cut(s) 765
GluI GCNGC 1 cut(s) 411
GsaI CCCAGC 3 cut(s) 127, 432, 567
HaeIII GGCC 4 cut(s) 186, 255, 400, 541
Hin1II CATG 4 cut(s) 53, 265, 316, 652
HindIII AAGCTT 2 cut(s) 579, 815
HinfI GANTC 1 cut(s) 20
HphI GGTGA 1 cut(s) 474
Hpy166II GTNNAC 1 cut(s) 670
Hpy188I TCNGA 4 cut(s) 16, 136, 299, 790
Hpy188III TCNNGA 2 cut(s) 24, 241
Hpy8I GTNNAC 1 cut(s) 670
HpyAV CCTTC 4 cut(s) 190, 258, 267, 428
HpyCH4III ACNGT 5 cut(s) 65, 599, 658, 709, 721
HpyCH4IV ACGT 1 cut(s) 845
HpyCH4V TGCA 3 cut(s) 46, 413, 695
HpyF10VI GCNNNNNNNGC 3 cut(s) 160, 221, 734
HpyF3I CTNAG 1 cut(s) 802
HpySE526I ACGT 1 cut(s) 845
Hsp92II CATG 4 cut(s) 53, 265, 316, 652
Kzo9I GATC 4 cut(s) 243, 336, 513, 554
LguI GCTCTTC 1 cut(s) 16
LmnI GCTCC 1 cut(s) 450
Lsp1109I GCAGC 1 cut(s) 397
LweI GCATC 3 cut(s) 55, 384, 788
MaeI CTAG 1 cut(s) 765
MaeII ACGT 1 cut(s) 845
MaeIII GTNAC 2 cut(s) 520, 700
MalI GATC 4 cut(s) 245, 338, 515, 556
MboI GATC 4 cut(s) 243, 336, 513, 554
MboII GAAGA 4 cut(s) 3, 29, 71, 763
MfeI CAATTG 1 cut(s) 558
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 7 cut(s) 37, 452, 498, 505, 533, 558, 687
MlyI GAGTC 1 cut(s) 29
MmeI TCCRAC 2 cut(s) 114, 298
MnlI CCTC 3 cut(s) 138, 411, 747
MseI TTAA 3 cut(s) 389, 608, 686
MunI CAATTG 1 cut(s) 558
MvnI CGCG 2 cut(s) 369, 512
MwoI GCNNNNNNNGC 3 cut(s) 160, 221, 734
NdeII GATC 4 cut(s) 243, 336, 513, 554
NlaIII CATG 4 cut(s) 53, 265, 316, 652
NlaIV GGNNCC 2 cut(s) 446, 573
PciSI GCTCTTC 1 cut(s) 16
PkrI GCNGC 1 cut(s) 412
Ple19I CGATCG 1 cut(s) 516
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
PsiI TTATAA 1 cut(s) 308
Psp124BI GAGCTC 1 cut(s) 11
PspFI CCCAGC 3 cut(s) 123, 428, 563
PspN4I GGNNCC 2 cut(s) 446, 573
PspPI GGNCC 2 cut(s) 254, 540
PvuI CGATCG 1 cut(s) 516
SacI GAGCTC 1 cut(s) 11
SapI GCTCTTC 1 cut(s) 16
SaqAI TTAA 3 cut(s) 389, 608, 686
SatI GCNGC 1 cut(s) 411
Sau3AI GATC 4 cut(s) 243, 336, 513, 554
Sau96I GGNCC 2 cut(s) 254, 540
SchI GAGTC 1 cut(s) 29
SduI GDGCHC 1 cut(s) 11
SetI ASST 6 cut(s) 11, 583, 750, 803, 819, 848
SfaNI GCATC 3 cut(s) 55, 384, 788
SfcI CTRYAG 1 cut(s) 595
SpeI ACTAGT 1 cut(s) 764
Sse9I AATT 7 cut(s) 37, 452, 498, 505, 533, 558, 687
SsiI CCGC 4 cut(s) 367, 373, 623, 833
SspMI CTAG 1 cut(s) 765
SstI GAGCTC 1 cut(s) 11
TaaI ACNGT 5 cut(s) 65, 599, 658, 709, 721
TaiI ACGT 1 cut(s) 848
TaqI TCGA 2 cut(s) 403, 457
TasI AATT 7 cut(s) 37, 452, 498, 505, 533, 558, 687
Tru1I TTAA 3 cut(s) 389, 608, 686
Tru9I TTAA 3 cut(s) 389, 608, 686
TscAI CASTG 3 cut(s) 48, 70, 604
TseI GCWGC 1 cut(s) 410
TspDTI ATGAA 2 cut(s) 48, 545
TspRI CASTG 3 cut(s) 48, 70, 604
XapI RAATTY 2 cut(s) 37, 533
XcmI CCANNNNNNNNNTGG 1 cut(s) 162
XmiI GTMKAC 1 cut(s) 669
XspI CTAG 1 cut(s) 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.