RLG00000002399

SNARE associated Golgi protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0005719
Physical Location & Seq
Reverse (-)
33439610 .. 33441282
1673 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002399

Sequence Viewer

Length: 957 bp
ATGATGAGCTCTTCTGAAGAGTCAGGAAAGAATGAAAATTCAGTGCATCATGTGAGAGAAGACAGTGAATATGTTAGGCTGGTTATATCCAACGAAACAAACACAGCAGAAGCAGATGTCTCGCAGCCTCAATCAGAAGCAGGGGTTAAATCTTTTTGGTGGTGGATTAAAGCCTTGGCCTTGTGCCTTGTCACCATTGTAGTGCTTCTCATTTTCTTGAAATGGGGGGTTCCATTTCTTTTTGAAAAGGTTCTGTTGCCAATAATGCGATGGGAAGCCACAGCCTTCGGCCGTCCAGTTCTTGCCATTGTTCTCGTTGCTTCTCTGGCATTGTTCCCTGTGTTCCTGATCCCTTCGGGCCCTTCCATGTGGTTGGCTGGAATGATTTTTGGTTATGGCTTCGGATTTGTTATAATCATGGTTGGAACTACTATTGGGATGATCCTACCATATTTGATTGGTCTGTATTTCCGCGACCGCATCCATCAATGGTTAAAGAGATGGCCTCGAAATGCTGCAATGATTAGACTTGCTGGGGAAGGGAGTTGGCTCCATCAATTTCGAGTGGTTGCTCTCTTTAGGGTTTCACCCTTTCCATACACAATTTTCAATTACGCTATCGTGGTTACAAGTATGAGATTTTGGCCCTACTTGTGGGGATCAATTGCTGGGATGGTGCCAGAAGCTTTTATTTACATATACAGTGGTCGCTTGATAAGGACATTTGCGGATGTCAAGTATGGGAACTATCACATGACTACCGTGGAGATTGTATACAACGCTCTATCCTTAATTGTTGCAATCGTAACCACAGTTGCTTTTACTGTTTATGCCAAAAATGCTTTGAATGAGCTAAAGAGGGCAGAGACTAGTGGTGTGGAAGCATCTGCTTCTGACCATATCAGCTTACAGATGGAGAAACTTCCACTTGAAAAACCGCATGTTTTTACGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE_assoc

Protein Analysis

319

Amino Acids

36.02

Weight (kDa)

8.85

Isoelectric Point (pI)

35.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VTT_dom PF09335 117 - 237 2.3e-20 VTT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 413
AccB1I GGYRCC 1 cut(s) 676
AccI GTMKAC 1 cut(s) 774
AccII CGCG 1 cut(s) 474
AciI CCGC 4 cut(s) 472, 478, 728, 938
AclWI GGATC 3 cut(s) 343, 436, 667
AcoI YGGCCR 1 cut(s) 289
AcsI RAATTY 1 cut(s) 37
AcuI CTGAAG 1 cut(s) 36
AfiI CCNNNNNNNGG 1 cut(s) 654
AgsI TTSAA 5 cut(s) 220, 245, 610, 847, 932
AhlI ACTAGT 1 cut(s) 869
AluBI AGCT 4 cut(s) 9, 686, 853, 906
AluI AGCT 4 cut(s) 9, 686, 853, 906
Alw21I GWGCWC 1 cut(s) 11
Alw26I GTCTC 2 cut(s) 124, 860
AlwI GGATC 3 cut(s) 343, 436, 667
AoxI GGCC 5 cut(s) 177, 289, 358, 503, 644
ApaI GGGCCC 1 cut(s) 362
ApeKI GCWGC 2 cut(s) 124, 515
ApoI RAATTY 1 cut(s) 37
Asp700I GAANNNNTTC 1 cut(s) 249
AspS9I GGNCC 3 cut(s) 358, 359, 645
AsuHPI GGTGA 2 cut(s) 184, 579
BaeGI GKGCMC 1 cut(s) 362
BanI GGYRCC 1 cut(s) 676
BanII GRGCYC 2 cut(s) 11, 362
BbsI GAAGAC 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 11
BbvI GCAGC 2 cut(s) 136, 502
BccI CCATC 6 cut(s) 264, 492, 495, 561, 667, 907
BceAI ACGGC 1 cut(s) 276
BcgI CGANNNNNNTGC 2 cut(s) 102, 136
BcoDI GTCTC 2 cut(s) 124, 860
BcuI ACTAGT 1 cut(s) 869
BfaI CTAG 1 cut(s) 870
BisI GCNGC 2 cut(s) 125, 516
BlsI GCNGC 2 cut(s) 126, 517
BmgT120I GGNCC 3 cut(s) 358, 359, 645
BmiI GGNNCC 4 cut(s) 231, 360, 551, 678
BmsI GCATC 3 cut(s) 55, 489, 893
BpiI GAAGAC 1 cut(s) 66
BplI GAGNNNNNCTC 2 cut(s) 490, 522
BsaJI CCNNGG 2 cut(s) 174, 762
Bsc4I CCNNNNNNNGG 1 cut(s) 654
Bse1I ACTGG 1 cut(s) 296
Bse3DI GCAATG 1 cut(s) 525
BseDI CCNNGG 2 cut(s) 174, 762
BseGI GGATG 4 cut(s) 444, 480, 678, 736
BseLI CCNNNNNNNGG 1 cut(s) 654
BseMI GCAATG 1 cut(s) 525
BseNI ACTGG 1 cut(s) 296
BseSI GKGCMC 1 cut(s) 362
BseX3I CGGCCG 1 cut(s) 289
BseXI GCAGC 2 cut(s) 136, 502
BseYI CCCAGC 2 cut(s) 533, 668
Bsh1236I CGCG 1 cut(s) 474
Bsh1285I CGRYCG 2 cut(s) 292, 478
BshFI GGCC 5 cut(s) 179, 291, 360, 505, 646
BshNI GGYRCC 1 cut(s) 676
BsiEI CGRYCG 2 cut(s) 292, 478
BsiHKAI GWGCWC 1 cut(s) 11
BslI CCNNNNNNNGG 1 cut(s) 654
BsmAI GTCTC 2 cut(s) 124, 860
BsnI GGCC 5 cut(s) 179, 291, 360, 505, 646
Bsp120I GGGCCC 1 cut(s) 358
Bsp1286I GDGCHC 2 cut(s) 11, 362
Bsp143I GATC 3 cut(s) 348, 441, 659
BspACI CCGC 4 cut(s) 472, 478, 728, 938
BspANI GGCC 5 cut(s) 179, 291, 360, 505, 646
BspFNI CGCG 1 cut(s) 474
BspLI GGNNCC 4 cut(s) 231, 360, 551, 678
BspPI GGATC 3 cut(s) 343, 436, 667
BspQI GCTCTTC 1 cut(s) 16
BspT107I GGYRCC 1 cut(s) 676
BsrDI GCAATG 1 cut(s) 525
BsrI ACTGG 1 cut(s) 296
BssECI CCNNGG 2 cut(s) 174, 762
BssMI GATC 3 cut(s) 348, 441, 659
BssNAI GTATAC 1 cut(s) 775
BssT1I CCWWGG 1 cut(s) 174
Bst1107I GTATAC 1 cut(s) 775
Bst4CI ACNGT 5 cut(s) 65, 704, 763, 814, 826
Bst6I CTCTTC 2 cut(s) 12, 16
BstDSI CCRYGG 1 cut(s) 762
BstF5I GGATG 4 cut(s) 444, 480, 678, 736
BstFNI CGCG 1 cut(s) 474
BstKTI GATC 3 cut(s) 351, 444, 662
BstMAI GTCTC 2 cut(s) 124, 860
BstMBI GATC 3 cut(s) 348, 441, 659
BstMCI CGRYCG 2 cut(s) 292, 478
BstMWI GCNNNNNNNGC 3 cut(s) 265, 326, 839
BstNSI RCATGY 1 cut(s) 944
BstSLI GKGCMC 1 cut(s) 362
BstUI CGCG 1 cut(s) 474
BstV1I GCAGC 2 cut(s) 136, 502
BstV2I GAAGAC 1 cut(s) 66
BstXI CCANNNNNNTGG 1 cut(s) 373
BstZ17I GTATAC 1 cut(s) 775
BstZI CGGCCG 1 cut(s) 289
BsuRI GGCC 5 cut(s) 179, 291, 360, 505, 646
BtgI CCRYGG 1 cut(s) 762
BtgZI GCGATG 1 cut(s) 283
BtsCI GGATG 4 cut(s) 444, 480, 678, 736
BtsIMutI CAGTG 3 cut(s) 48, 70, 709
Cfr13I GGNCC 3 cut(s) 358, 359, 645
CviAII CATG 5 cut(s) 50, 367, 418, 754, 941
DpnI GATC 3 cut(s) 350, 443, 661
DpnII GATC 3 cut(s) 348, 441, 659
EaeI YGGCCR 1 cut(s) 289
EagI CGGCCG 1 cut(s) 289
Eam1104I CTCTTC 2 cut(s) 12, 16
EarI CTCTTC 2 cut(s) 12, 16
Ecl136II GAGCTC 1 cut(s) 9
EclXI CGGCCG 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 174
Eco24I GRGCYC 2 cut(s) 11, 362
Eco52I CGGCCG 1 cut(s) 289
Eco53kI GAGCTC 1 cut(s) 9
Eco57I CTGAAG 1 cut(s) 36
EcoICRI GAGCTC 1 cut(s) 9
EcoO109I RGGNCCY 1 cut(s) 359
EcoT14I CCWWGG 1 cut(s) 174
EcoT38I GRGCYC 2 cut(s) 11, 362
ErhI CCWWGG 1 cut(s) 174
FaeI CATG 5 cut(s) 53, 370, 421, 757, 944
FatI CATG 5 cut(s) 49, 366, 417, 753, 940
FblI GTMKAC 1 cut(s) 774
Fnu4HI GCNGC 2 cut(s) 125, 516
FokI GGATG 4 cut(s) 451, 467, 685, 743
FriOI GRGCYC 2 cut(s) 11, 362
Fsp4HI GCNGC 2 cut(s) 125, 516
FspBI CTAG 1 cut(s) 870
GluI GCNGC 2 cut(s) 125, 516
GsaI CCCAGC 2 cut(s) 537, 672
HaeIII GGCC 5 cut(s) 179, 291, 360, 505, 646
Hin1II CATG 5 cut(s) 53, 370, 421, 757, 944
HindIII AAGCTT 1 cut(s) 684
HinfI GANTC 1 cut(s) 20
HphI GGTGA 2 cut(s) 184, 579
Hpy166II GTNNAC 1 cut(s) 775
Hpy188I TCNGA 4 cut(s) 16, 136, 404, 895
Hpy188III TCNNGA 3 cut(s) 24, 217, 346
Hpy8I GTNNAC 1 cut(s) 775
HpyAV CCTTC 4 cut(s) 295, 363, 372, 533
HpyCH4III ACNGT 5 cut(s) 65, 704, 763, 814, 826
HpyCH4IV ACGT 1 cut(s) 950
HpyCH4V TGCA 3 cut(s) 46, 518, 800
HpyF10VI GCNNNNNNNGC 3 cut(s) 265, 326, 839
HpySE526I ACGT 1 cut(s) 950
Hsp92II CATG 5 cut(s) 53, 370, 421, 757, 944
Kzo9I GATC 3 cut(s) 348, 441, 659
LguI GCTCTTC 1 cut(s) 16
LmnI GCTCC 1 cut(s) 555
Lsp1109I GCAGC 2 cut(s) 136, 502
LweI GCATC 3 cut(s) 55, 489, 893
MaeI CTAG 1 cut(s) 870
MaeII ACGT 1 cut(s) 950
MaeIII GTNAC 3 cut(s) 190, 625, 805
MalI GATC 3 cut(s) 350, 443, 661
MboI GATC 3 cut(s) 348, 441, 659
MboII GAAGA 3 cut(s) 3, 29, 71
MfeI CAATTG 1 cut(s) 663
MhlI GDGCHC 2 cut(s) 11, 362
MluCI AATT 6 cut(s) 37, 557, 603, 610, 663, 792
MlyI GAGTC 1 cut(s) 29
MmeI TCCRAC 2 cut(s) 114, 403
MnlI CCTC 3 cut(s) 138, 516, 852
MroXI GAANNNNTTC 1 cut(s) 249
MseI TTAA 4 cut(s) 147, 168, 494, 791
MslI CAYNNNNRTG 1 cut(s) 200
MunI CAATTG 1 cut(s) 663
MvnI CGCG 1 cut(s) 474
MwoI GCNNNNNNNGC 3 cut(s) 265, 326, 839
NdeII GATC 3 cut(s) 348, 441, 659
NlaIII CATG 5 cut(s) 53, 370, 421, 757, 944
NlaIV GGNNCC 4 cut(s) 231, 360, 551, 678
NmuCI GTSAC 1 cut(s) 190
NspI RCATGY 1 cut(s) 944
PciSI GCTCTTC 1 cut(s) 16
PdmI GAANNNNTTC 1 cut(s) 249
PkrI GCNGC 2 cut(s) 126, 517
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
PsiI TTATAA 1 cut(s) 413
Psp124BI GAGCTC 1 cut(s) 11
PspFI CCCAGC 2 cut(s) 533, 668
PspN4I GGNNCC 4 cut(s) 231, 360, 551, 678
PspOMI GGGCCC 1 cut(s) 358
PspPI GGNCC 3 cut(s) 358, 359, 645
RseI CAYNNNNRTG 1 cut(s) 200
SacI GAGCTC 1 cut(s) 11
SapI GCTCTTC 1 cut(s) 16
SaqAI TTAA 4 cut(s) 147, 168, 494, 791
SatI GCNGC 2 cut(s) 125, 516
Sau3AI GATC 3 cut(s) 348, 441, 659
Sau96I GGNCC 3 cut(s) 358, 359, 645
SchI GAGTC 1 cut(s) 29
SduI GDGCHC 2 cut(s) 11, 362
SetI ASST 6 cut(s) 11, 252, 688, 855, 908, 953
SfaNI GCATC 3 cut(s) 55, 489, 893
SmiMI CAYNNNNRTG 1 cut(s) 200
SpeI ACTAGT 1 cut(s) 869
Sse9I AATT 6 cut(s) 37, 557, 603, 610, 663, 792
SsiI CCGC 4 cut(s) 472, 478, 728, 938
SspMI CTAG 1 cut(s) 870
SstI GAGCTC 1 cut(s) 11
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 5 cut(s) 65, 704, 763, 814, 826
TaiI ACGT 1 cut(s) 953
TaqI TCGA 2 cut(s) 508, 562
TasI AATT 6 cut(s) 37, 557, 603, 610, 663, 792
Tru1I TTAA 4 cut(s) 147, 168, 494, 791
Tru9I TTAA 4 cut(s) 147, 168, 494, 791
TscAI CASTG 3 cut(s) 48, 70, 709
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 2 cut(s) 124, 515
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 1 cut(s) 48
TspRI CASTG 3 cut(s) 48, 70, 709
XapI RAATTY 1 cut(s) 37
XceI RCATGY 1 cut(s) 944
XcmI CCANNNNNNNNNTGG 1 cut(s) 267
XmiI GTMKAC 1 cut(s) 774
XmnI GAANNNNTTC 1 cut(s) 249
XspI CTAG 1 cut(s) 870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.