MD15G1446000.v1.1

SNARE associated Golgi protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0005719
Physical Location & Seq
Reverse (-)
54921320 .. 54925877
4558 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1446000.v1.1.491

Sequence Viewer

Length: 966 bp
ATGATGACAAACTCCTTGGAAGAGTTAGGGAAGCATCCAACCTCAGTGCATTATGTTAGAGAAGACAGTGAGTATGTTAGGCTGGTTGTATCCAATGAAACAAGGGCGGCAGAAGCTGATATCTTGCAGCCTCAATCAGAGACAAGGGTTAAATCTTTCTTGTGGTGGATTAGAGCCTTAGCTTGGTGCCTTGTTATCATTATATTGCTCCTCATTTTCTTAAAATGGGGGATGCCGTTTCTTTTTGAAAAGGTTCTCTTACCAATAATGCAATGGGAAGCTACTGCATTTGGCCGTCCAGTTCTTGCCCTTGTTCTCGTTGCTTCACTCGCTTTGTTCCCTGTGGTCCTAATACCTTCTGGCCCTTCCATGTGGCTGGCTGGAATGATATTTGGTTATGGCTTAGGGTTTGTTATCATCATGGTCGGAACAACTATTGGGATGGTCCTGCCATATCTAATTGGTCTGTTTTTCCGTGATCGCATACATCAATGGTTAAATAGATGGCCCCGAAATGCTGCAATGATTAGACTTGCCGGGGAAGGGAGTTGGTTCCATCAATTTCGAGTGGTTGCTCTCTTTAGGGTTTCACCCTTTCCGTACACAATTTTTAACTATGCAATCGTTGTTACCAGTATGACATTTTGGCCCTACTTATGTGGATCAGTTGCTGGAATGGTGCCAGAGGCTTTCATTTACATCTACAGTGGTCGCTTAATAAGGACATTTGCAAATGTTAAGTATGGGAACTATCACTTGACTAAAGTGGAGATTGTATACAACGTTATATCCTTAATTGTTGCAGTTATAACCACAGTTGCTTTTACTGTTTATGCAAAAAATGCTTTAAATAAGCTTAAAAGGGCAGAAACTAGTGGAGGAGCGGAAGCATCAGCCTTGGACCATGGCAGTTTAGAGATGGAGAAGCTTCCCCTTGAAAAACCCAAGCATATAAGAACATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE_assoc

Protein Analysis

322

Amino Acids

36.46

Weight (kDa)

9.45

Isoelectric Point (pI)

32.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VTT_dom PF09335 118 - 238 3.2e-19 VTT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 809
AccB1I GGYRCC 2 cut(s) 186, 679
AccBSI CCGCTC 1 cut(s) 884
AccI GTMKAC 1 cut(s) 777
AciI CCGC 2 cut(s) 107, 884
AclI AACGTT 1 cut(s) 783
AclWI GGATC 1 cut(s) 670
AcoI YGGCCR 1 cut(s) 292
AfaI GTAC 1 cut(s) 602
AfiI CCNNNNNNNGG 2 cut(s) 183, 543
AgsI TTSAA 2 cut(s) 248, 938
AhlI ACTAGT 1 cut(s) 872
AluBI AGCT 5 cut(s) 116, 182, 281, 856, 928
AluI AGCT 5 cut(s) 116, 182, 281, 856, 928
Alw26I GTCTC 1 cut(s) 134
AlwI GGATC 1 cut(s) 670
AlwNI CAGNNNCTG 2 cut(s) 116, 671
AoxI GGCC 4 cut(s) 292, 361, 506, 647
ApeKI GCWGC 2 cut(s) 127, 518
Asp700I GAANNNNTTC 1 cut(s) 252
AspS9I GGNCC 6 cut(s) 346, 362, 445, 507, 648, 901
AsuC2I CCSGG 1 cut(s) 538
AsuHPI GGTGA 1 cut(s) 582
AvaII GGWCC 3 cut(s) 346, 445, 901
BanI GGYRCC 2 cut(s) 186, 679
BbsI GAAGAC 1 cut(s) 69
BbvI GCAGC 2 cut(s) 139, 505
BccI CCATC 4 cut(s) 436, 498, 564, 913
BceAI ACGGC 2 cut(s) 220, 279
BciVI GTATCC 1 cut(s) 100
BcnI CCSGG 1 cut(s) 538
BcoDI GTCTC 1 cut(s) 134
BcuI ACTAGT 1 cut(s) 872
BfaI CTAG 1 cut(s) 873
BfmI CTRYAG 1 cut(s) 703
BfuI GTATCC 1 cut(s) 100
BisI GCNGC 3 cut(s) 108, 128, 519
BlsI GCNGC 3 cut(s) 109, 129, 520
Bme1390I CCNGG 1 cut(s) 538
Bme18I GGWCC 3 cut(s) 346, 445, 901
BmgT120I GGNCC 6 cut(s) 346, 362, 445, 507, 648, 901
BmiI GGNNCC 4 cut(s) 188, 509, 554, 681
BmrFI CCNGG 1 cut(s) 538
BmsI GCATC 3 cut(s) 43, 222, 899
BpiI GAAGAC 1 cut(s) 69
Bpu10I CCTNAGC 2 cut(s) 178, 403
BpuMI CCSGG 1 cut(s) 538
BsaJI CCNNGG 4 cut(s) 15, 537, 897, 904
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 543
Bse1I ACTGG 2 cut(s) 299, 633
Bse3DI GCAATG 2 cut(s) 278, 528
BseDI CCNNGG 4 cut(s) 15, 537, 897, 904
BseGI GGATG 3 cut(s) 34, 237, 447
BseLI CCNNNNNNNGG 2 cut(s) 183, 543
BseMI GCAATG 2 cut(s) 278, 528
BseMII CTCAG 1 cut(s) 57
BseNI ACTGG 2 cut(s) 299, 633
BseRI GAGGAG 2 cut(s) 200, 894
BseXI GCAGC 2 cut(s) 139, 505
BshFI GGCC 4 cut(s) 294, 363, 508, 649
BshNI GGYRCC 2 cut(s) 186, 679
BsiSI CCGG 1 cut(s) 537
BslI CCNNNNNNNGG 2 cut(s) 183, 543
BsmAI GTCTC 1 cut(s) 134
BsnI GGCC 4 cut(s) 294, 363, 508, 649
Bsp143I GATC 2 cut(s) 478, 662
Bsp19I CCATGG 1 cut(s) 904
BspACI CCGC 2 cut(s) 107, 884
BspANI GGCC 4 cut(s) 294, 363, 508, 649
BspCNI CTCAG 1 cut(s) 56
BspLI GGNNCC 4 cut(s) 188, 509, 554, 681
BspPI GGATC 1 cut(s) 670
BspT107I GGYRCC 2 cut(s) 186, 679
BsrBI CCGCTC 1 cut(s) 884
BsrDI GCAATG 2 cut(s) 278, 528
BsrI ACTGG 2 cut(s) 299, 633
BssECI CCNNGG 4 cut(s) 15, 537, 897, 904
BssMI GATC 2 cut(s) 478, 662
BssNAI GTATAC 1 cut(s) 778
BssT1I CCWWGG 3 cut(s) 15, 897, 904
Bst1107I GTATAC 1 cut(s) 778
Bst4CI ACNGT 4 cut(s) 68, 707, 817, 829
Bst6I CTCTTC 1 cut(s) 15
BstAPI GCANNNNNTGC 1 cut(s) 842
BstC8I GCNNGC 1 cut(s) 378
BstDEI CTNAG 3 cut(s) 43, 178, 403
BstDSI CCRYGG 1 cut(s) 904
BstF5I GGATG 3 cut(s) 34, 237, 447
BstKTI GATC 2 cut(s) 481, 665
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 2 cut(s) 478, 662
BstMWI GCNNNNNNNGC 3 cut(s) 113, 329, 842
BstSCI CCNGG 1 cut(s) 536
BstSFI CTRYAG 1 cut(s) 703
BstV1I GCAGC 2 cut(s) 139, 505
BstV2I GAAGAC 1 cut(s) 69
BstXI CCANNNNNNTGG 1 cut(s) 376
BstZ17I GTATAC 1 cut(s) 778
BsuI GTATCC 1 cut(s) 100
BsuRI GGCC 4 cut(s) 294, 363, 508, 649
BtgI CCRYGG 1 cut(s) 904
BtsCI GGATG 3 cut(s) 34, 237, 447
BtsIMutI CAGTG 3 cut(s) 51, 73, 712
Cac8I GCNNGC 1 cut(s) 378
CaiI CAGNNNCTG 2 cut(s) 116, 671
Cfr13I GGNCC 6 cut(s) 346, 362, 445, 507, 648, 901
Csp6I GTAC 1 cut(s) 601
CviAII CATG 4 cut(s) 370, 421, 905, 960
CviQI GTAC 1 cut(s) 601
DdeI CTNAG 3 cut(s) 43, 178, 403
DpnI GATC 2 cut(s) 480, 664
DpnII GATC 2 cut(s) 478, 662
DraI TTTAAA 1 cut(s) 849
EaeI YGGCCR 1 cut(s) 292
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Eco130I CCWWGG 3 cut(s) 15, 897, 904
Eco32I GATATC 1 cut(s) 121
Eco47I GGWCC 3 cut(s) 346, 445, 901
EcoRV GATATC 1 cut(s) 121
EcoT14I CCWWGG 3 cut(s) 15, 897, 904
ErhI CCWWGG 3 cut(s) 15, 897, 904
FaeI CATG 4 cut(s) 373, 424, 908, 963
FalI AAGNNNNNCTT 2 cut(s) 242, 274
FatI CATG 4 cut(s) 369, 420, 904, 959
FblI GTMKAC 1 cut(s) 777
Fnu4HI GCNGC 3 cut(s) 108, 128, 519
FokI GGATG 3 cut(s) 21, 244, 454
Fsp4HI GCNGC 3 cut(s) 108, 128, 519
FspBI CTAG 1 cut(s) 873
GluI GCNGC 3 cut(s) 108, 128, 519
HaeIII GGCC 4 cut(s) 294, 363, 508, 649
HapII CCGG 1 cut(s) 537
Hin1II CATG 4 cut(s) 373, 424, 908, 963
HindIII AAGCTT 2 cut(s) 854, 926
HpaII CCGG 1 cut(s) 537
HphI GGTGA 1 cut(s) 582
Hpy166II GTNNAC 2 cut(s) 603, 778
Hpy188I TCNGA 2 cut(s) 139, 428
Hpy8I GTNNAC 2 cut(s) 603, 778
HpyAV CCTTC 3 cut(s) 366, 375, 536
HpyCH4III ACNGT 4 cut(s) 68, 707, 817, 829
HpyCH4IV ACGT 1 cut(s) 783
HpyCH4V TGCA 9 cut(s) 49, 127, 271, 287, 521, 620, 731, 803, 836
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 329, 842
HpyF3I CTNAG 3 cut(s) 43, 178, 403
HpySE526I ACGT 1 cut(s) 783
Hsp92II CATG 4 cut(s) 373, 424, 908, 963
Kzo9I GATC 2 cut(s) 478, 662
LmnI GCTCC 2 cut(s) 213, 881
Lsp1109I GCAGC 2 cut(s) 139, 505
LweI GCATC 3 cut(s) 43, 222, 899
MaeI CTAG 1 cut(s) 873
MaeII ACGT 1 cut(s) 783
MaeIII GTNAC 1 cut(s) 628
MalI GATC 2 cut(s) 480, 664
MbiI CCGCTC 1 cut(s) 884
MboI GATC 2 cut(s) 478, 662
MboII GAAGA 2 cut(s) 32, 74
MluCI AATT 4 cut(s) 459, 560, 606, 795
MmeI TCCRAC 2 cut(s) 62, 406
MnlI CCTC 5 cut(s) 52, 141, 221, 679, 872
MroXI GAANNNNTTC 1 cut(s) 252
MseI TTAA 9 cut(s) 150, 221, 497, 612, 716, 738, 794, 848, 858
MspI CCGG 1 cut(s) 537
MspR9I CCNGG 1 cut(s) 538
MwoI GCNNNNNNNGC 3 cut(s) 113, 329, 842
NciI CCSGG 1 cut(s) 538
NcoI CCATGG 1 cut(s) 904
NdeII GATC 2 cut(s) 478, 662
NlaIII CATG 4 cut(s) 373, 424, 908, 963
NlaIV GGNNCC 4 cut(s) 188, 509, 554, 681
PdmI GAANNNNTTC 1 cut(s) 252
PkrI GCNGC 3 cut(s) 109, 129, 520
PsiI TTATAA 1 cut(s) 809
Psp1406I AACGTT 1 cut(s) 783
PspN4I GGNNCC 4 cut(s) 188, 509, 554, 681
PspPI GGNCC 6 cut(s) 346, 362, 445, 507, 648, 901
PstNI CAGNNNCTG 2 cut(s) 116, 671
RsaI GTAC 1 cut(s) 602
RsaNI GTAC 1 cut(s) 601
SaqAI TTAA 9 cut(s) 150, 221, 497, 612, 716, 738, 794, 848, 858
SatI GCNGC 3 cut(s) 108, 128, 519
Sau3AI GATC 2 cut(s) 478, 662
Sau96I GGNCC 6 cut(s) 346, 362, 445, 507, 648, 901
ScrFI CCNGG 1 cut(s) 538
SetI ASST 9 cut(s) 44, 118, 184, 255, 283, 358, 786, 858, 930
SfaNI GCATC 3 cut(s) 43, 222, 899
SfcI CTRYAG 1 cut(s) 703
SinI GGWCC 3 cut(s) 346, 445, 901
SpeI ACTAGT 1 cut(s) 872
Sse9I AATT 4 cut(s) 459, 560, 606, 795
SsiI CCGC 2 cut(s) 107, 884
SspMI CTAG 1 cut(s) 873
StyD4I CCNGG 1 cut(s) 536
StyI CCWWGG 3 cut(s) 15, 897, 904
TaaI ACNGT 4 cut(s) 68, 707, 817, 829
TaiI ACGT 1 cut(s) 786
TaqI TCGA 1 cut(s) 565
TasI AATT 4 cut(s) 459, 560, 606, 795
TauI GCSGC 1 cut(s) 110
Tru1I TTAA 9 cut(s) 150, 221, 497, 612, 716, 738, 794, 848, 858
Tru9I TTAA 9 cut(s) 150, 221, 497, 612, 716, 738, 794, 848, 858
TscAI CASTG 3 cut(s) 51, 73, 712
TseI GCWGC 2 cut(s) 127, 518
TspDTI ATGAA 2 cut(s) 111, 682
TspGWI ACGGA 2 cut(s) 464, 588
TspRI CASTG 3 cut(s) 51, 73, 712
VpaK11BI GGWCC 3 cut(s) 346, 445, 901
XcmI CCANNNNNNNNNTGG 1 cut(s) 270
XmiI GTMKAC 1 cut(s) 777
XmnI GAANNNNTTC 1 cut(s) 252
XspI CTAG 1 cut(s) 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.