Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005719

Physical Location & Seq

Genomic Coordinates Reverse (-)

47776718 .. 47781581

Gene Structure 4864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G588100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGGAAGGGTTTCATATGTGTATCTTATCTTACTTGACACTTTTAATAATTTTCAGTTGAATTTAATAGCGCTTTCTACTGCCTCTGGGGTCTCATTAATGATGACAAACACTTCTGAAGAGTTGGGGAAGCATTCAACCTCAGTGTATCGTGTGAGAGAAGACAGTGAATACGTTCGGCTGGTTATATCCAATGAAACAAGGACGGCAGAAGCTGATATCTTGCAGCCACAATCAGAAACAAGAGTTAAATCTTTTTTGTGGTGGATTAGAGCCTTAGCTGGGTGCCTTGTTATCATTATATTTCTTCTCATTTTCTTAAAATGGGGGATGCCATTTCTTTTTGAAAAGGTTCTCTTGCCAATATTGCAGTGGGAAGCCACTGCCTTTGGCCGTCCTGTTCTTGCCCTTGTTCTTGTTGCTTCTCTCGCTTTGTTCCCTGTGGTCTTAATACCTTCTGGCCCTTCCATGTGGTTGGCTGGAATGATTTTTGGTTATGGCTTCGGGTTTGTTATAATCATGGTTGGAACAACTATTGGGATGGTCCTGCCATATTTGATTGGTCTGTTTTTCCGTGACCGCATCCATCAATGGTTAAAGAGATGGCCCCGGAATGCTGCAATGATTAGACTTGCTGGGGAAGGTAGTTGGTTCCATCAATTTCGAGTGGTTGCTCTCTTTAGGGTTTCACCCTTTCCGTACACAATCTTCAACTATGCAATTGTGGTTACCAGTATGACATTTTGGCCCTACTTATGCGGATCAGTTGCTGGAATGGTGCCAGAAGCTTTCATTTACATCTACAGTGGTCGCTTAATAAGGACATTTGCAGATGTTAAGTATGGGAACTATCACTTGACTACAGTTGAGATCATATACAACATTATATCCTTAATTGTTGCAGTTATAACCACAGTTGCTTTTACTGTTTATGCAAAAAATGCTTTAAACGAGCTTAAAAGAGAAGAAGAAACTAGTGGAGTGGAAGCATCTGCCTCGGGCCATGGCAGTTTAGAGATGGAGAAAGCTTCCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SNARE_assoc

Protein Analysis

346

Amino Acids

38.89

Weight (kDa)

8.67

Isoelectric Point (pI)

34.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02370 AT2G02370 AT2G02370
fragaria_vesca	FvH4_5g27120 FvH4_5g27120
malus_domestica	MD15G1446000.v1.1
prunus_persica	Prupe.1G588100_v2.0.a1 Prupe.1G588100_v2.0.a1 Prupe.1G588100_v2.0.a1 Prupe.1G588100_v2.0.a1 Prupe.1G588100_v2.0.a1 Prupe.1G588100_v2.0.a1 Prupe.1G588100_v2.0.a1 Prupe.1G588100_v2.0.a1
pyrus_communis	pycom15g39280
rosa_chinensis	RchiOBHm_Chr7g0218111
rosa_laevigata	RLG00000002399
rosa_multiflora	Rmu_sc0003627.1_g000014 Rmu_sc0007270.1_g000002
rosa_roxburghii	Rroxscaffold_3G00241300
rosa_rugosa	Rorug07G0174100 Rorug07G0174200 Rorug07G0174200
rosa_samantha	Rh7AG316600 Rh7BG307700 Rh7CG333500 Rh7DG315500
rosa_wichuraiana	Rw7G026800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	515, 908
AccB1I	GGYRCC	2 cut(s)	285, 778
AciI	CCGC	2 cut(s)	580, 759
AclWI	GGATC	1 cut(s)	769
AcoI	YGGCCR	1 cut(s)	391
AcsI	RAATTY	1 cut(s)	61
AcuI	CTGAAG	1 cut(s)	138
AfaI	GTAC	1 cut(s)	701
AfeI	AGCGCT	1 cut(s)	72
AfiI	CCNNNNNNNGG	1 cut(s)	282
AgsI	TTSAA	4 cut(s)	61, 138, 347, 712
AhlI	ACTAGT	1 cut(s)	974
AluBI	AGCT	5 cut(s)	215, 281, 788, 955, 1028
AluI	AGCT	5 cut(s)	215, 281, 788, 955, 1028
Alw26I	GTCTC	1 cut(s)	97
AlwI	GGATC	1 cut(s)	769
AlwNI	CAGNNNCTG	2 cut(s)	215, 770
Ama87I	CYCGRG	1 cut(s)	997
Aor51HI	AGCGCT	1 cut(s)	72
AoxI	GGCC	5 cut(s)	391, 460, 605, 746, 1000
ApeKI	GCWGC	2 cut(s)	226, 617
ApoI	RAATTY	1 cut(s)	61
AseI	ATTAAT	1 cut(s)	98
Asp700I	GAANNNNTTC	3 cut(s)	10, 174, 351
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	5 cut(s)	461, 544, 606, 747, 1000
AsuC2I	CCSGG	1 cut(s)	610
AsuHPI	GGTGA	1 cut(s)	681
AvaI	CYCGRG	1 cut(s)	997
AvaII	GGWCC	1 cut(s)	544
BanI	GGYRCC	2 cut(s)	285, 778
BarI	GAAGNNNNNNTAC	2 cut(s)	692, 724
BbsI	GAAGAC	1 cut(s)	168
BbvI	GCAGC	2 cut(s)	238, 604
BccI	CCATC	5 cut(s)	535, 594, 597, 663, 1012
BceAI	ACGGC	2 cut(s)	222, 378
BcgI	CGANNNNNNTGC	2 cut(s)	978, 1012
BcnI	CCSGG	1 cut(s)	610
BcoDI	GTCTC	1 cut(s)	97
BcuI	ACTAGT	1 cut(s)	974
BfaI	CTAG	1 cut(s)	975
BfmI	CTRYAG	2 cut(s)	802, 861
BfoI	RGCGCY	1 cut(s)	74
BisI	GCNGC	2 cut(s)	227, 618
BlsI	GCNGC	2 cut(s)	228, 619
Bme1390I	CCNGG	1 cut(s)	610
Bme18I	GGWCC	1 cut(s)	544
BmeT110I	CYCGRG	1 cut(s)	997
BmgT120I	GGNCC	5 cut(s)	461, 544, 606, 747, 1000
BmiI	GGNNCC	4 cut(s)	287, 608, 653, 780
BmrFI	CCNGG	1 cut(s)	610
BmsI	GCATC	3 cut(s)	321, 591, 998
BpiI	GAAGAC	1 cut(s)	168
Bpu10I	CCTNAGC	1 cut(s)	277
BpuMI	CCSGG	1 cut(s)	610
BsaI	GGTCTC	1 cut(s)	97
BsaJI	CCNNGG	3 cut(s)	608, 996, 1003
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
Bse1I	ACTGG	1 cut(s)	732
Bse3DI	GCAATG	1 cut(s)	627
BseDI	CCNNGG	3 cut(s)	608, 996, 1003
BseGI	GGATG	3 cut(s)	336, 546, 582
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseMI	GCAATG	1 cut(s)	627
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	1 cut(s)	732
BseXI	GCAGC	2 cut(s)	238, 604
BseYI	CCCAGC	2 cut(s)	281, 635
BshFI	GGCC	5 cut(s)	393, 462, 607, 748, 1002
BshNI	GGYRCC	2 cut(s)	285, 778
BsiHKCI	CYCGRG	1 cut(s)	997
BsiSI	CCGG	1 cut(s)	610
BslI	CCNNNNNNNGG	1 cut(s)	282
BsmAI	GTCTC	1 cut(s)	97
BsmI	GAATGC	2 cut(s)	133, 619
BsnI	GGCC	5 cut(s)	393, 462, 607, 748, 1002
Bso31I	GGTCTC	1 cut(s)	97
BsoBI	CYCGRG	1 cut(s)	997
Bsp143I	GATC	2 cut(s)	761, 870
Bsp19I	CCATGG	1 cut(s)	1003
BspACI	CCGC	2 cut(s)	580, 759
BspANI	GGCC	5 cut(s)	393, 462, 607, 748, 1002
BspCNI	CTCAG	1 cut(s)	155
BspLI	GGNNCC	4 cut(s)	287, 608, 653, 780
BspPI	GGATC	1 cut(s)	769
BspT107I	GGYRCC	2 cut(s)	285, 778
BspTNI	GGTCTC	1 cut(s)	97
BsrDI	GCAATG	1 cut(s)	627
BsrI	ACTGG	1 cut(s)	732
BssECI	CCNNGG	3 cut(s)	608, 996, 1003
BssMI	GATC	2 cut(s)	761, 870
BssT1I	CCWWGG	1 cut(s)	1003
Bst4CI	ACNGT	5 cut(s)	167, 806, 865, 916, 928
Bst6I	CTCTTC	1 cut(s)	114
BstAPI	GCANNNNNTGC	1 cut(s)	941
BstDEI	CTNAG	2 cut(s)	142, 277
BstDSI	CCRYGG	1 cut(s)	1003
BstEII	GGTNACC	1 cut(s)	727
BstF5I	GGATG	3 cut(s)	336, 546, 582
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	2 cut(s)	764, 873
BstMAI	GTCTC	1 cut(s)	97
BstMBI	GATC	2 cut(s)	761, 870
BstMWI	GCNNNNNNNGC	3 cut(s)	367, 428, 941
BstPI	GGTNACC	1 cut(s)	727
BstSCI	CCNGG	1 cut(s)	608
BstSFI	CTRYAG	2 cut(s)	802, 861
BstV1I	GCAGC	2 cut(s)	238, 604
BstV2I	GAAGAC	1 cut(s)	168
BstXI	CCANNNNNNTGG	1 cut(s)	475
BsuRI	GGCC	5 cut(s)	393, 462, 607, 748, 1002
BtgI	CCRYGG	1 cut(s)	1003
BtsCI	GGATG	3 cut(s)	336, 546, 582
BtsI	GCAGTG	2 cut(s)	377, 381
BtsIMutI	CAGTG	5 cut(s)	150, 172, 377, 381, 811
CaiI	CAGNNNCTG	2 cut(s)	215, 770
CfoI	GCGC	1 cut(s)	73
Cfr13I	GGNCC	5 cut(s)	461, 544, 606, 747, 1000
Csp6I	GTAC	1 cut(s)	700
CspCI	CAANNNNNGTGG	2 cut(s)	370, 405
CviAII	CATG	3 cut(s)	469, 520, 1004
CviQI	GTAC	1 cut(s)	700
DdeI	CTNAG	2 cut(s)	142, 277
DpnI	GATC	2 cut(s)	763, 872
DpnII	GATC	2 cut(s)	761, 870
DraI	TTTAAA	1 cut(s)	948
EaeI	YGGCCR	1 cut(s)	391
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	1003
Eco31I	GGTCTC	1 cut(s)	97
Eco32I	GATATC	1 cut(s)	220
Eco47I	GGWCC	1 cut(s)	544
Eco47III	AGCGCT	1 cut(s)	72
Eco57I	CTGAAG	1 cut(s)	138
Eco88I	CYCGRG	1 cut(s)	997
Eco91I	GGTNACC	1 cut(s)	727
EcoO65I	GGTNACC	1 cut(s)	727
EcoRV	GATATC	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	1003
ErhI	CCWWGG	1 cut(s)	1003
FaeI	CATG	3 cut(s)	472, 523, 1007
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FatI	CATG	3 cut(s)	468, 519, 1003
FauNDI	CATATG	1 cut(s)	16
Fnu4HI	GCNGC	2 cut(s)	227, 618
FokI	GGATG	3 cut(s)	343, 553, 569
Fsp4HI	GCNGC	2 cut(s)	227, 618
FspBI	CTAG	1 cut(s)	975
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	2 cut(s)	227, 618
GsaI	CCCAGC	2 cut(s)	285, 639
HaeII	RGCGCY	1 cut(s)	74
HaeIII	GGCC	5 cut(s)	393, 462, 607, 748, 1002
HapII	CCGG	1 cut(s)	610
HhaI	GCGC	1 cut(s)	73
Hin1II	CATG	3 cut(s)	472, 523, 1007
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HindIII	AAGCTT	2 cut(s)	786, 1026
HpaII	CCGG	1 cut(s)	610
HphI	GGTGA	1 cut(s)	681
Hpy166II	GTNNAC	1 cut(s)	702
Hpy188I	TCNGA	2 cut(s)	118, 238
Hpy8I	GTNNAC	1 cut(s)	702
HpyAV	CCTTC	3 cut(s)	465, 474, 635
HpyCH4III	ACNGT	5 cut(s)	167, 806, 865, 916, 928
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	7 cut(s)	226, 370, 620, 719, 830, 902, 935
HpyF10VI	GCNNNNNNNGC	3 cut(s)	367, 428, 941
HpyF3I	CTNAG	2 cut(s)	142, 277
HpySE526I	ACGT	1 cut(s)	174
Hsp92II	CATG	3 cut(s)	472, 523, 1007
HspAI	GCGC	1 cut(s)	71
Kzo9I	GATC	2 cut(s)	761, 870
Lsp1109I	GCAGC	2 cut(s)	238, 604
LweI	GCATC	3 cut(s)	321, 591, 998
MaeI	CTAG	1 cut(s)	975
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	2 cut(s)	575, 727
MalI	GATC	2 cut(s)	763, 872
MboI	GATC	2 cut(s)	761, 870
MboII	GAAGA	6 cut(s)	131, 173, 299, 700, 977, 980
MfeI	CAATTG	1 cut(s)	720
MluCI	AATT	5 cut(s)	49, 61, 659, 720, 894
MmeI	TCCRAC	1 cut(s)	505
MnlI	CCTC	3 cut(s)	94, 151, 1006
MroXI	GAANNNNTTC	3 cut(s)	10, 174, 351
MspI	CCGG	1 cut(s)	610
MspR9I	CCNGG	1 cut(s)	610
MunI	CAATTG	1 cut(s)	720
Mva1269I	GAATGC	2 cut(s)	133, 619
MwoI	GCNNNNNNNGC	3 cut(s)	367, 428, 941
NciI	CCSGG	1 cut(s)	610
NcoI	CCATGG	1 cut(s)	1003
NdeI	CATATG	1 cut(s)	16
NdeII	GATC	2 cut(s)	761, 870
NlaIII	CATG	3 cut(s)	472, 523, 1007
NlaIV	GGNNCC	4 cut(s)	287, 608, 653, 780
NmuCI	GTSAC	1 cut(s)	575
PctI	GAATGC	2 cut(s)	133, 619
PdmI	GAANNNNTTC	3 cut(s)	10, 174, 351
PkrI	GCNGC	2 cut(s)	228, 619
PshBI	ATTAAT	1 cut(s)	98
PsiI	TTATAA	2 cut(s)	515, 908
PspEI	GGTNACC	1 cut(s)	727
PspFI	CCCAGC	2 cut(s)	281, 635
PspN4I	GGNNCC	4 cut(s)	287, 608, 653, 780
PspPI	GGNCC	5 cut(s)	461, 544, 606, 747, 1000
PstNI	CAGNNNCTG	2 cut(s)	215, 770
RsaI	GTAC	1 cut(s)	701
RsaNI	GTAC	1 cut(s)	700
SatI	GCNGC	2 cut(s)	227, 618
Sau3AI	GATC	2 cut(s)	761, 870
Sau96I	GGNCC	5 cut(s)	461, 544, 606, 747, 1000
ScrFI	CCNGG	1 cut(s)	610
SfaNI	GCATC	3 cut(s)	321, 591, 998
SfcI	CTRYAG	2 cut(s)	802, 861
SinI	GGWCC	1 cut(s)	544
SpeI	ACTAGT	1 cut(s)	974
Sse9I	AATT	5 cut(s)	49, 61, 659, 720, 894
SsiI	CCGC	2 cut(s)	580, 759
SspI	AATATT	1 cut(s)	366
SspMI	CTAG	1 cut(s)	975
StyD4I	CCNGG	1 cut(s)	608
StyI	CCWWGG	1 cut(s)	1003
TaaI	ACNGT	5 cut(s)	167, 806, 865, 916, 928
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	1 cut(s)	664
TasI	AATT	5 cut(s)	49, 61, 659, 720, 894
TscAI	CASTG	5 cut(s)	150, 172, 377, 388, 811
TseFI	GTSAC	1 cut(s)	575
TseI	GCWGC	2 cut(s)	226, 617
Tsp45I	GTSAC	1 cut(s)	575
TspDTI	ATGAA	2 cut(s)	210, 781
TspGWI	ACGGA	2 cut(s)	563, 687
TspRI	CASTG	5 cut(s)	150, 172, 377, 388, 811
VpaK11BI	GGWCC	1 cut(s)	544
VspI	ATTAAT	1 cut(s)	98
XapI	RAATTY	1 cut(s)	61
XcmI	CCANNNNNNNNNTGG	1 cut(s)	369
XmnI	GAANNNNTTC	3 cut(s)	10, 174, 351
XspI	CTAG	1 cut(s)	975

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.