Rw7G026800

SNARE associated Golgi protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0005719
Physical Location & Seq
Forward (+)
34124155 .. 34127323
3169 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G026800.1

Sequence Viewer

Length: 993 bp
ATGTTTCTCTTCAAAGTACTTCATCTTCAGCTCCGAACAAATTCAATATGTATGGAGTCAGGAAAGAATGCCAATTCAGTGCATCATGTGAGAGAAGACAGTGAATATGTTAGGCTGGTTATATCCAACGAAACAAACACAGCAGAAGCAGATGTCTTGCAGCCTCAATCAGAAGCAGGGGTTAAATCTTTTTGGTGGTGGACTAAAGCCTTAGCCTTGTGCCTTGTCACCATTGTATTGCTTCTCATTTTCTTGAAATGGGGGGTTCCGTTTCTTTTTGAAAAGGTTCTGTTGCCAATAATGCGATGGGAAGCCACAGCCTTCGGCCGTCCAGTTCTTGCCATTGTTCTCGTTGCTTCTCTGGCATTGTTCCCTGTGTTCTTGATCCCTTCTGGCCCTTCCATGTGGTTGGCTGGAATGATTTTTGGTTATGGCTTCGGATTTGTTATAATCATGGTTGGAACAACTATTGGGATGATCCTACCATATTTGATTGGTCTGTATTTCCGCGACCGTATCCATCAATGGTTAAAGAGATGGCCTCGAAACGCTGCAATGATTAGACTTGCTGGGGAAGGGAGTTGGCTCCATCAATTTCGAGTGGTTGCTCTCTTTAGGGTTTCACCCTTTCCATACACAATTTTCAATTACGCTATCGTGGTTACAAGTATGAGATTTTGGCCCTACTTGTGGGGATCAATTGCTGGGATGGTGCCAGAAGCTTTTATTTACATCTACAGTGGTCGCTTAATAAGGACATTTGCAGACGTCAAGTATGGGAACTATCACATGACTACCGTGGAGATTGTATACAACATTCTATCCTTAATTGTTGCAATCGTAACCACAGTTGCTTTTACTGTTTATGCCAAAAATGCTTTGAATGAGCTGAAGAGGGCAGAGACTAGTGGTGTGGAAGCATCTGCTTCTGACCATATCAGCTTACAGATGGAGAAGCTTCCACTTGAAAAACCGCATATTTTTACGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE_assoc

Protein Analysis

330

Amino Acids

37.57

Weight (kDa)

9.35

Isoelectric Point (pI)

34.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VTT_dom PF09335 129 - 249 2.4e-20 VTT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 449
AatII GACGTC 1 cut(s) 771
AccB1I GGYRCC 1 cut(s) 712
AccI GTMKAC 1 cut(s) 810
AccII CGCG 1 cut(s) 510
AciI CCGC 2 cut(s) 508, 974
AclWI GGATC 3 cut(s) 379, 472, 703
AcoI YGGCCR 1 cut(s) 325
AcsI RAATTY 1 cut(s) 40
AcuI CTGAAG 2 cut(s) 11, 911
AcyI GRCGYC 1 cut(s) 768
AfaI GTAC 1 cut(s) 18
AfiI CCNNNNNNNGG 1 cut(s) 690
AgsI TTSAA 7 cut(s) 13, 45, 256, 281, 646, 883, 968
AhlI ACTAGT 1 cut(s) 905
AluBI AGCT 5 cut(s) 31, 722, 889, 942, 958
AluI AGCT 5 cut(s) 31, 722, 889, 942, 958
Alw26I GTCTC 1 cut(s) 896
AlwI GGATC 3 cut(s) 379, 472, 703
AoxI GGCC 4 cut(s) 325, 394, 539, 680
ApeKI GCWGC 2 cut(s) 160, 551
ApoI RAATTY 1 cut(s) 40
Asp700I GAANNNNTTC 2 cut(s) 40, 285
AspS9I GGNCC 2 cut(s) 395, 681
AsuHPI GGTGA 2 cut(s) 220, 615
BanI GGYRCC 1 cut(s) 712
BarI GAAGNNNNNNTAC 2 cut(s) 9, 41
BbsI GAAGAC 1 cut(s) 102
BbvI GCAGC 2 cut(s) 172, 538
BccI CCATC 6 cut(s) 300, 528, 531, 597, 703, 943
BceAI ACGGC 1 cut(s) 312
BciVI GTATCC 1 cut(s) 527
BcoDI GTCTC 1 cut(s) 896
BcuI ACTAGT 1 cut(s) 905
BfaI CTAG 1 cut(s) 906
BfmI CTRYAG 1 cut(s) 736
BfuI GTATCC 1 cut(s) 527
BisI GCNGC 2 cut(s) 161, 552
BlsI GCNGC 2 cut(s) 162, 553
BmcAI AGTACT 1 cut(s) 18
BmgT120I GGNCC 2 cut(s) 395, 681
BmiI GGNNCC 3 cut(s) 267, 587, 714
BmsI GCATC 2 cut(s) 91, 929
BpiI GAAGAC 1 cut(s) 102
BplI GAGNNNNNCTC 2 cut(s) 526, 558
Bpu10I CCTNAGC 1 cut(s) 211
BsaHI GRCGYC 1 cut(s) 768
BsaJI CCNNGG 1 cut(s) 798
Bsc4I CCNNNNNNNGG 1 cut(s) 690
Bse1I ACTGG 1 cut(s) 332
Bse3DI GCAATG 1 cut(s) 561
BseDI CCNNGG 1 cut(s) 798
BseGI GGATG 2 cut(s) 480, 714
BseLI CCNNNNNNNGG 1 cut(s) 690
BseMI GCAATG 1 cut(s) 561
BseNI ACTGG 1 cut(s) 332
BseX3I CGGCCG 1 cut(s) 325
BseXI GCAGC 2 cut(s) 172, 538
BseYI CCCAGC 2 cut(s) 569, 704
Bsh1236I CGCG 1 cut(s) 510
Bsh1285I CGRYCG 2 cut(s) 328, 514
BshFI GGCC 4 cut(s) 327, 396, 541, 682
BshNI GGYRCC 1 cut(s) 712
BsiEI CGRYCG 2 cut(s) 328, 514
BslI CCNNNNNNNGG 1 cut(s) 690
BsmAI GTCTC 1 cut(s) 896
BsmI GAATGC 1 cut(s) 73
BsnI GGCC 4 cut(s) 327, 396, 541, 682
Bsp143I GATC 3 cut(s) 384, 477, 695
BspACI CCGC 2 cut(s) 508, 974
BspANI GGCC 4 cut(s) 327, 396, 541, 682
BspFNI CGCG 1 cut(s) 510
BspLI GGNNCC 3 cut(s) 267, 587, 714
BspPI GGATC 3 cut(s) 379, 472, 703
BspT107I GGYRCC 1 cut(s) 712
BsrDI GCAATG 1 cut(s) 561
BsrI ACTGG 1 cut(s) 332
BssECI CCNNGG 1 cut(s) 798
BssMI GATC 3 cut(s) 384, 477, 695
BssNAI GTATAC 1 cut(s) 811
BssNI GRCGYC 1 cut(s) 768
Bst1107I GTATAC 1 cut(s) 811
Bst4CI ACNGT 6 cut(s) 101, 515, 740, 799, 850, 862
Bst6I CTCTTC 2 cut(s) 14, 887
BstACI GRCGYC 1 cut(s) 768
BstDEI CTNAG 1 cut(s) 211
BstDSI CCRYGG 1 cut(s) 798
BstF5I GGATG 2 cut(s) 480, 714
BstFNI CGCG 1 cut(s) 510
BstKTI GATC 3 cut(s) 387, 480, 698
BstMAI GTCTC 1 cut(s) 896
BstMBI GATC 3 cut(s) 384, 477, 695
BstMCI CGRYCG 2 cut(s) 328, 514
BstMWI GCNNNNNNNGC 3 cut(s) 301, 362, 875
BstSFI CTRYAG 1 cut(s) 736
BstUI CGCG 1 cut(s) 510
BstV1I GCAGC 2 cut(s) 172, 538
BstV2I GAAGAC 1 cut(s) 102
BstXI CCANNNNNNTGG 1 cut(s) 409
BstZ17I GTATAC 1 cut(s) 811
BstZI CGGCCG 1 cut(s) 325
BsuI GTATCC 1 cut(s) 527
BsuRI GGCC 4 cut(s) 327, 396, 541, 682
BtgI CCRYGG 1 cut(s) 798
BtgZI GCGATG 1 cut(s) 319
BtsCI GGATG 2 cut(s) 480, 714
BtsIMutI CAGTG 3 cut(s) 84, 106, 745
Cfr13I GGNCC 2 cut(s) 395, 681
Csp6I GTAC 1 cut(s) 17
CviAII CATG 4 cut(s) 86, 403, 454, 790
CviQI GTAC 1 cut(s) 17
DdeI CTNAG 1 cut(s) 211
DpnI GATC 3 cut(s) 386, 479, 697
DpnII GATC 3 cut(s) 384, 477, 695
EaeI YGGCCR 1 cut(s) 325
EagI CGGCCG 1 cut(s) 325
Eam1104I CTCTTC 2 cut(s) 14, 887
EarI CTCTTC 2 cut(s) 14, 887
EclXI CGGCCG 1 cut(s) 325
Eco52I CGGCCG 1 cut(s) 325
Eco57I CTGAAG 2 cut(s) 11, 911
FaeI CATG 4 cut(s) 89, 406, 457, 793
FatI CATG 4 cut(s) 85, 402, 453, 789
FblI GTMKAC 1 cut(s) 810
Fnu4HI GCNGC 2 cut(s) 161, 552
FokI GGATG 2 cut(s) 487, 721
Fsp4HI GCNGC 2 cut(s) 161, 552
FspBI CTAG 1 cut(s) 906
GluI GCNGC 2 cut(s) 161, 552
GsaI CCCAGC 2 cut(s) 573, 708
HaeIII GGCC 4 cut(s) 327, 396, 541, 682
Hin1I GRCGYC 1 cut(s) 768
Hin1II CATG 4 cut(s) 89, 406, 457, 793
HindIII AAGCTT 2 cut(s) 720, 956
HinfI GANTC 1 cut(s) 56
HphI GGTGA 2 cut(s) 220, 615
Hpy166II GTNNAC 2 cut(s) 201, 811
Hpy188I TCNGA 4 cut(s) 35, 172, 440, 931
Hpy188III TCNNGA 3 cut(s) 60, 253, 382
Hpy8I GTNNAC 2 cut(s) 201, 811
HpyAV CCTTC 4 cut(s) 331, 399, 408, 569
HpyCH4III ACNGT 6 cut(s) 101, 515, 740, 799, 850, 862
HpyCH4IV ACGT 2 cut(s) 768, 986
HpyCH4V TGCA 5 cut(s) 82, 160, 554, 764, 836
HpyF10VI GCNNNNNNNGC 3 cut(s) 301, 362, 875
HpyF3I CTNAG 1 cut(s) 211
HpySE526I ACGT 2 cut(s) 768, 986
Hsp92I GRCGYC 1 cut(s) 768
Hsp92II CATG 4 cut(s) 89, 406, 457, 793
Kzo9I GATC 3 cut(s) 384, 477, 695
LmnI GCTCC 2 cut(s) 36, 591
Lsp1109I GCAGC 2 cut(s) 172, 538
LweI GCATC 2 cut(s) 91, 929
MaeI CTAG 1 cut(s) 906
MaeII ACGT 2 cut(s) 768, 986
MaeIII GTNAC 3 cut(s) 226, 661, 841
MalI GATC 3 cut(s) 386, 479, 697
MboI GATC 3 cut(s) 384, 477, 695
MboII GAAGA 3 cut(s) 17, 107, 904
MfeI CAATTG 1 cut(s) 699
MluCI AATT 7 cut(s) 40, 73, 593, 639, 646, 699, 828
MlyI GAGTC 1 cut(s) 65
MmeI TCCRAC 2 cut(s) 150, 439
MnlI CCTC 3 cut(s) 174, 552, 888
MroXI GAANNNNTTC 2 cut(s) 40, 285
MseI TTAA 4 cut(s) 183, 530, 749, 827
MunI CAATTG 1 cut(s) 699
Mva1269I GAATGC 1 cut(s) 73
MvnI CGCG 1 cut(s) 510
MwoI GCNNNNNNNGC 3 cut(s) 301, 362, 875
NdeII GATC 3 cut(s) 384, 477, 695
NlaIII CATG 4 cut(s) 89, 406, 457, 793
NlaIV GGNNCC 3 cut(s) 267, 587, 714
NmuCI GTSAC 1 cut(s) 226
PctI GAATGC 1 cut(s) 73
PdmI GAANNNNTTC 2 cut(s) 40, 285
PkrI GCNGC 2 cut(s) 162, 553
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
PsiI TTATAA 1 cut(s) 449
PspFI CCCAGC 2 cut(s) 569, 704
PspN4I GGNNCC 3 cut(s) 267, 587, 714
PspPI GGNCC 2 cut(s) 395, 681
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
SaqAI TTAA 4 cut(s) 183, 530, 749, 827
SatI GCNGC 2 cut(s) 161, 552
Sau3AI GATC 3 cut(s) 384, 477, 695
Sau96I GGNCC 2 cut(s) 395, 681
ScaI AGTACT 1 cut(s) 18
SchI GAGTC 1 cut(s) 65
SetI ASST 8 cut(s) 33, 288, 724, 771, 891, 944, 960, 989
SfaNI GCATC 2 cut(s) 91, 929
SfcI CTRYAG 1 cut(s) 736
SpeI ACTAGT 1 cut(s) 905
Sse9I AATT 7 cut(s) 40, 73, 593, 639, 646, 699, 828
SsiI CCGC 2 cut(s) 508, 974
SspMI CTAG 1 cut(s) 906
TaaI ACNGT 6 cut(s) 101, 515, 740, 799, 850, 862
TaiI ACGT 2 cut(s) 771, 989
TaqI TCGA 2 cut(s) 544, 598
TasI AATT 7 cut(s) 40, 73, 593, 639, 646, 699, 828
TatI WGTACW 1 cut(s) 16
Tru1I TTAA 4 cut(s) 183, 530, 749, 827
Tru9I TTAA 4 cut(s) 183, 530, 749, 827
TscAI CASTG 3 cut(s) 84, 106, 745
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 2 cut(s) 160, 551
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 1 cut(s) 11
TspGWI ACGGA 1 cut(s) 258
TspRI CASTG 3 cut(s) 84, 106, 745
XapI RAATTY 1 cut(s) 40
XcmI CCANNNNNNNNNTGG 1 cut(s) 303
XmiI GTMKAC 1 cut(s) 810
XmnI GAANNNNTTC 2 cut(s) 40, 285
XspI CTAG 1 cut(s) 906
ZraI GACGTC 1 cut(s) 769
ZrmI AGTACT 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.