Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007270.1

Orthogroup ID

OG0005719

Physical Location & Seq

Genomic Coordinates Forward (+)

17951 .. 18797

Gene Structure 847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007270.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atgatgagctctactgaagagtcaggaaagaatgccaattcagtgcatcatgtgagagaagacagtgaatatgttaggctggttatatccaacgaaacaaacacagcagaagcagatgtcttgcagcctcaatcagaagcaggggttaaatctttttggtggtggactaaagccttagccttgtgccttgtcaccattgtattgcttctcattttcttgaaatggggggttccgtttctttttgaaaaggttctgttgccaataatgcgatgggaagccacagccttcggtcgtccagttcttgccattgttctcgttgcttctctggcattgttccctgtgttcttgatcccttctggcccttccatgtggttggctggaatgatttttggttatggcttcggatttgttataatcatggttggaacaactattgggatgatcctaccatatttgattggtctgtatttccgcgaccgtatccatgtaagattttcattagtcttgaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SNARE_assoc

Protein Analysis

170

Amino Acids

19.08

Weight (kDa)

6.83

Isoelectric Point (pI)

37.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02370 AT2G02370 AT2G02370
fragaria_vesca	FvH4_5g27120 FvH4_5g27120
malus_domestica	MD15G1446000.v1.1
prunus_persica	Prupe.1G588100_v2.0.a1 Prupe.1G588100_v2.0.a1 Prupe.1G588100_v2.0.a1 Prupe.1G588100_v2.0.a1 Prupe.1G588100_v2.0.a1 Prupe.1G588100_v2.0.a1 Prupe.1G588100_v2.0.a1 Prupe.1G588100_v2.0.a1
pyrus_communis	pycom15g39280
rosa_chinensis	RchiOBHm_Chr7g0218111
rosa_laevigata	RLG00000002399
rosa_multiflora	Rmu_sc0003627.1_g000014 Rmu_sc0007270.1_g000002
rosa_roxburghii	Rroxscaffold_3G00241300
rosa_rugosa	Rorug07G0174100 Rorug07G0174200 Rorug07G0174200
rosa_samantha	Rh7AG316600 Rh7BG307700 Rh7CG333500 Rh7DG315500
rosa_wichuraiana	Rw7G026800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	413
AccII	CGCG	1 cut(s)	474
AciI	CCGC	1 cut(s)	472
AclWI	GGATC	2 cut(s)	343, 436
AcuI	CTGAAG	1 cut(s)	36
AgsI	TTSAA	3 cut(s)	220, 245, 508
AluBI	AGCT	1 cut(s)	9
AluI	AGCT	1 cut(s)	9
Alw21I	GWGCWC	1 cut(s)	11
AlwI	GGATC	2 cut(s)	343, 436
AoxI	GGCC	1 cut(s)	358
ApeKI	GCWGC	1 cut(s)	124
Asp700I	GAANNNNTTC	1 cut(s)	249
AspS9I	GGNCC	1 cut(s)	359
AsuHPI	GGTGA	1 cut(s)	184
BanII	GRGCYC	1 cut(s)	11
BbsI	GAAGAC	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	1 cut(s)	136
BccI	CCATC	1 cut(s)	264
BciVI	GTATCC	1 cut(s)	491
BfuI	GTATCC	1 cut(s)	491
BisI	GCNGC	1 cut(s)	125
BlsI	GCNGC	1 cut(s)	126
BmgT120I	GGNCC	1 cut(s)	359
BmiI	GGNNCC	1 cut(s)	231
BmsI	GCATC	1 cut(s)	55
BpiI	GAAGAC	1 cut(s)	66
Bpu10I	CCTNAGC	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	296
BseGI	GGATG	1 cut(s)	444
BseNI	ACTGG	1 cut(s)	296
BseXI	GCAGC	1 cut(s)	136
Bsh1236I	CGCG	1 cut(s)	474
Bsh1285I	CGRYCG	2 cut(s)	292, 478
BshFI	GGCC	1 cut(s)	360
BsiEI	CGRYCG	2 cut(s)	292, 478
BsiHKAI	GWGCWC	1 cut(s)	11
BsmI	GAATGC	1 cut(s)	37
BsnI	GGCC	1 cut(s)	360
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	2 cut(s)	348, 441
BspACI	CCGC	1 cut(s)	472
BspANI	GGCC	1 cut(s)	360
BspFNI	CGCG	1 cut(s)	474
BspLI	GGNNCC	1 cut(s)	231
BspPI	GGATC	2 cut(s)	343, 436
BsrI	ACTGG	1 cut(s)	296
BssMI	GATC	2 cut(s)	348, 441
Bst4CI	ACNGT	2 cut(s)	65, 479
Bst6I	CTCTTC	1 cut(s)	12
BstDEI	CTNAG	1 cut(s)	175
BstF5I	GGATG	1 cut(s)	444
BstFNI	CGCG	1 cut(s)	474
BstKTI	GATC	2 cut(s)	351, 444
BstMBI	GATC	2 cut(s)	348, 441
BstMCI	CGRYCG	2 cut(s)	292, 478
BstMWI	GCNNNNNNNGC	2 cut(s)	265, 326
BstUI	CGCG	1 cut(s)	474
BstV1I	GCAGC	1 cut(s)	136
BstV2I	GAAGAC	1 cut(s)	66
BstXI	CCANNNNNNTGG	1 cut(s)	373
BsuI	GTATCC	1 cut(s)	491
BsuRI	GGCC	1 cut(s)	360
BtgZI	GCGATG	1 cut(s)	283
BtsCI	GGATG	1 cut(s)	444
BtsIMutI	CAGTG	2 cut(s)	48, 70
Cfr13I	GGNCC	1 cut(s)	359
CviAII	CATG	4 cut(s)	50, 367, 418, 485
DdeI	CTNAG	1 cut(s)	175
DpnI	GATC	2 cut(s)	350, 443
DpnII	GATC	2 cut(s)	348, 441
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Ecl136II	GAGCTC	1 cut(s)	9
Eco24I	GRGCYC	1 cut(s)	11
Eco53kI	GAGCTC	1 cut(s)	9
Eco57I	CTGAAG	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	9
EcoT38I	GRGCYC	1 cut(s)	11
FaeI	CATG	4 cut(s)	53, 370, 421, 488
FaiI	YATR	9 cut(s)	51, 72, 86, 368, 396, 413, 419, 451, 486
FatI	CATG	4 cut(s)	49, 366, 417, 484
Fnu4HI	GCNGC	1 cut(s)	125
FokI	GGATG	1 cut(s)	451
FriOI	GRGCYC	1 cut(s)	11
Fsp4HI	GCNGC	1 cut(s)	125
GluI	GCNGC	1 cut(s)	125
HaeIII	GGCC	1 cut(s)	360
Hin1II	CATG	4 cut(s)	53, 370, 421, 488
HinfI	GANTC	1 cut(s)	20
HphI	GGTGA	1 cut(s)	184
Hpy166II	GTNNAC	1 cut(s)	165
Hpy188I	TCNGA	2 cut(s)	136, 404
Hpy188III	TCNNGA	4 cut(s)	24, 217, 346, 505
Hpy8I	GTNNAC	1 cut(s)	165
HpyAV	CCTTC	3 cut(s)	295, 363, 372
HpyCH4III	ACNGT	2 cut(s)	65, 479
HpyCH4V	TGCA	2 cut(s)	46, 124
HpyF10VI	GCNNNNNNNGC	2 cut(s)	265, 326
HpyF3I	CTNAG	1 cut(s)	175
Hsp92II	CATG	4 cut(s)	53, 370, 421, 488
Kzo9I	GATC	2 cut(s)	348, 441
LpnPI	CCDG	8 cut(s)	9, 65, 126, 309, 311, 342, 351, 363
Lsp1109I	GCAGC	1 cut(s)	136
LweI	GCATC	1 cut(s)	55
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	2 cut(s)	350, 443
MboI	GATC	2 cut(s)	348, 441
MboII	GAAGA	2 cut(s)	29, 71
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	1 cut(s)	37
MlyI	GAGTC	1 cut(s)	29
MmeI	TCCRAC	2 cut(s)	114, 403
MnlI	CCTC	1 cut(s)	138
MroXI	GAANNNNTTC	1 cut(s)	249
MseI	TTAA	1 cut(s)	147
Mva1269I	GAATGC	1 cut(s)	37
MvnI	CGCG	1 cut(s)	474
MwoI	GCNNNNNNNGC	2 cut(s)	265, 326
NdeII	GATC	2 cut(s)	348, 441
NlaIII	CATG	4 cut(s)	53, 370, 421, 488
NlaIV	GGNNCC	1 cut(s)	231
NmuCI	GTSAC	1 cut(s)	190
PctI	GAATGC	1 cut(s)	37
PdmI	GAANNNNTTC	1 cut(s)	249
PkrI	GCNGC	1 cut(s)	126
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
PsiI	TTATAA	1 cut(s)	413
Psp124BI	GAGCTC	1 cut(s)	11
PspN4I	GGNNCC	1 cut(s)	231
PspPI	GGNCC	1 cut(s)	359
SacI	GAGCTC	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	1 cut(s)	125
Sau3AI	GATC	2 cut(s)	348, 441
Sau96I	GGNCC	1 cut(s)	359
SchI	GAGTC	1 cut(s)	29
SduI	GDGCHC	1 cut(s)	11
SetI	ASST	2 cut(s)	11, 252
SfaNI	GCATC	1 cut(s)	55
Sse9I	AATT	1 cut(s)	37
SsiI	CCGC	1 cut(s)	472
SstI	GAGCTC	1 cut(s)	11
TaaI	ACNGT	2 cut(s)	65, 479
TaqII	GACCGA	1 cut(s)	278
TasI	AATT	1 cut(s)	37
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	2 cut(s)	48, 70
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	1 cut(s)	486
TspGWI	ACGGA	1 cut(s)	222
TspRI	CASTG	2 cut(s)	48, 70
XcmI	CCANNNNNNNNNTGG	1 cut(s)	267
XmnI	GAANNNNTTC	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.