Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016686

Physical Location & Seq

Genomic Coordinates Forward (+)

673260 .. 674986

Gene Structure 1727 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G02510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGGCGAAACCGTTGGGAACAACCGGTGAATTTTTCCGGCGAAGGGATGAGTGGAGGAAGCATCCGATGCTATCGAATCAAATGAGACACGCACTTCCAGGTATCGGAATCGGTGTTGGTGCCTTCTGCGTTTACCTCGTCGGTGAACAGATCTATAGCAAACTCATGGCTCCTTCTTCTCAATCATCGCATCAGAAACAACCCGCTCCATCTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NDUF_B12

Protein Analysis

72

Amino Acids

8.05

Weight (kDa)

10.01

Isoelectric Point (pI)

50.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDUF_B12	PF08122	14 - 53	7.4e-08	NADH-ubiquinone oxidoreductase B12 subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016686)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14450 AT1G14450 AT2G02510
fragaria_vesca	FvH4_5g27520
malus_domestica	MD08G1249300.v1.1 MD15G1444100.v1.1
prunus_persica	Prupe.1G586500_v2.0.a1 Prupe.1G586500_v2.0.a1
pyrus_communis	pycom08g21580
rosa_chinensis	RchiOBHm_Chr7g0218891
rosa_roxburghii	Rroxscaffold_3G00240420
rosa_rugosa	Rorug07G0179500
rosa_wichuraiana	Rw7G027330 Rw7G028460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	119
AccBSI	CCGCTC	1 cut(s)	206
AciI	CCGC	1 cut(s)	204
AcsI	RAATTY	1 cut(s)	29
AfiI	CCNNNNNNNGG	2 cut(s)	43, 104
AgeI	ACCGGT	1 cut(s)	23
AjnI	CCWGG	1 cut(s)	97
Alw26I	GTCTC	1 cut(s)	79
ApoI	RAATTY	1 cut(s)	29
AsiGI	ACCGGT	1 cut(s)	23
AsuHPI	GGTGA	2 cut(s)	38, 155
BanI	GGYRCC	1 cut(s)	119
BccI	CCATC	1 cut(s)	217
BciT130I	CCWGG	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	79
BfmI	CTRYAG	1 cut(s)	154
BglII	AGATCT	1 cut(s)	150
Bme1390I	CCNGG	1 cut(s)	99
BmiI	GGNNCC	2 cut(s)	121, 171
BmrFI	CCNGG	1 cut(s)	99
BmsI	GCATC	3 cut(s)	57, 70, 199
BsaWI	WCCGGW	1 cut(s)	23
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 104
Bse118I	RCCGGY	1 cut(s)	23
BseBI	CCWGG	1 cut(s)	99
BseGI	GGATG	2 cut(s)	52, 61
BseLI	CCNNNNNNNGG	2 cut(s)	43, 104
BshNI	GGYRCC	1 cut(s)	119
BshTI	ACCGGT	1 cut(s)	23
BsiSI	CCGG	2 cut(s)	24, 37
BslI	CCNNNNNNNGG	2 cut(s)	43, 104
BsmAI	GTCTC	1 cut(s)	79
Bsp143I	GATC	1 cut(s)	150
BspACI	CCGC	1 cut(s)	204
BspLI	GGNNCC	2 cut(s)	121, 171
BspT107I	GGYRCC	1 cut(s)	119
BsrBI	CCGCTC	1 cut(s)	206
BsrFI	RCCGGY	1 cut(s)	23
BssAI	RCCGGY	1 cut(s)	23
BssMI	GATC	1 cut(s)	150
Bst2UI	CCWGG	1 cut(s)	99
Bst4CI	ACNGT	1 cut(s)	12
BstAPI	GCANNNNNTGC	1 cut(s)	67
BstF5I	GGATG	2 cut(s)	52, 61
BstKTI	GATC	1 cut(s)	153
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	150
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstNI	CCWGG	1 cut(s)	99
BstSCI	CCNGG	1 cut(s)	97
BstSFI	CTRYAG	1 cut(s)	154
BstX2I	RGATCY	1 cut(s)	150
BstYI	RGATCY	1 cut(s)	150
BtgZI	GCGATG	1 cut(s)	171
BtsCI	GGATG	2 cut(s)	52, 61
BtsIMutI	CAGTG	1 cut(s)	214
Cfr10I	RCCGGY	1 cut(s)	23
CspAI	ACCGGT	1 cut(s)	23
CviAII	CATG	1 cut(s)	166
CviJI	RGCY	1 cut(s)	170
CviKI_1	RGCY	1 cut(s)	170
DpnI	GATC	1 cut(s)	152
DpnII	GATC	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	97
FaeI	CATG	1 cut(s)	169
FaiI	YATR	2 cut(s)	156, 167
FatI	CATG	1 cut(s)	165
FauI	CCCGC	1 cut(s)	211
FokI	GGATG	2 cut(s)	48, 59
HapII	CCGG	2 cut(s)	24, 37
Hin1II	CATG	1 cut(s)	169
HinfI	GANTC	2 cut(s)	76, 108
HpaII	CCGG	2 cut(s)	24, 37
HphI	GGTGA	2 cut(s)	38, 155
Hpy166II	GTNNAC	2 cut(s)	133, 146
Hpy188I	TCNGA	3 cut(s)	66, 107, 195
Hpy8I	GTNNAC	2 cut(s)	133, 146
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	3 cut(s)	36, 133, 183
HpyCH4III	ACNGT	1 cut(s)	12
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
Hsp92II	CATG	1 cut(s)	169
Kzo9I	GATC	1 cut(s)	150
LmnI	GCTCC	2 cut(s)	175, 211
LpnPI	CCDG	4 cut(s)	37, 50, 84, 111
LweI	GCATC	3 cut(s)	57, 70, 199
MalI	GATC	1 cut(s)	152
MbiI	CCGCTC	1 cut(s)	206
MboI	GATC	1 cut(s)	150
MboII	GAAGA	1 cut(s)	168
MflI	RGATCY	1 cut(s)	150
MluCI	AATT	1 cut(s)	29
MnlI	CCTC	2 cut(s)	48, 146
MspI	CCGG	2 cut(s)	24, 37
MspR9I	CCNGG	1 cut(s)	99
MvaI	CCWGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	67
NdeII	GATC	1 cut(s)	150
NlaIII	CATG	1 cut(s)	169
NlaIV	GGNNCC	2 cut(s)	121, 171
PfeI	GAWTC	2 cut(s)	76, 108
PinAI	ACCGGT	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	97
PspN4I	GGNNCC	2 cut(s)	121, 171
PsuI	RGATCY	1 cut(s)	150
Sau3AI	GATC	1 cut(s)	150
ScrFI	CCNGG	1 cut(s)	99
SetI	ASST	2 cut(s)	103, 138
SfaNI	GCATC	3 cut(s)	57, 70, 199
SfcI	CTRYAG	1 cut(s)	154
SgeI	CNNG	8 cut(s)	36, 49, 101, 110, 111, 149, 178, 215
Sse9I	AATT	1 cut(s)	29
SsiI	CCGC	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	97
TaaI	ACNGT	1 cut(s)	12
TaqI	TCGA	1 cut(s)	74
TasI	AATT	1 cut(s)	29
TfiI	GAWTC	2 cut(s)	76, 108
XapI	RAATTY	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.