Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0016686

Physical Location & Seq

Genomic Coordinates Forward (+)

32102672 .. 32104363

Gene Structure 1692 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00240420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGGGAAGCAGCAAGCCGTTGGGACCCACAGGGGAGTTCTTCAGGAGAAGGGACGAGTGGAGGAAGCACCCGATGCTTTCGAATCAGCTCCGCCACGCCACTCCCGGCCTCGGCATCGCTCTGGTGGCCTTCGGCGTCTACTTGGTCGGCGAGCAGTTCTACAACCGCGTCATCTCTCCTCCTTCTTCTCACTCCTCCTCCTCCTCTTCTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NDUF_B12

Protein Analysis

71

Amino Acids

7.85

Weight (kDa)

10.4

Isoelectric Point (pI)

55.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDUF_B12	PF08122	16 - 54	3.1e-08	NADH-ubiquinone oxidoreductase B12 subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016686)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14450 AT1G14450 AT2G02510
fragaria_vesca	FvH4_5g27520
malus_domestica	MD08G1249300.v1.1 MD15G1444100.v1.1
prunus_persica	Prupe.1G586500_v2.0.a1 Prupe.1G586500_v2.0.a1
pyrus_communis	pycom08g21580
rosa_chinensis	RchiOBHm_Chr7g0218891
rosa_roxburghii	Rroxscaffold_3G00240420
rosa_rugosa	Rorug07G0179500
rosa_wichuraiana	Rw7G027330 Rw7G028460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	138
AccII	CGCG	1 cut(s)	168
AciI	CCGC	2 cut(s)	91, 166
AcuI	CTGAAG	1 cut(s)	25
AcyI	GRCGYC	1 cut(s)	135
AfiI	CCNNNNNNNGG	1 cut(s)	110
AluBI	AGCT	1 cut(s)	88
AluI	AGCT	1 cut(s)	88
AoxI	GGCC	2 cut(s)	106, 126
ApeKI	GCWGC	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	23
AsuC2I	CCSGG	1 cut(s)	105
AsuII	TTCGAA	1 cut(s)	80
AvaII	GGWCC	1 cut(s)	23
BbvI	GCAGC	1 cut(s)	21
BcnI	CCSGG	1 cut(s)	105
BisI	GCNGC	1 cut(s)	10
BlsI	GCNGC	1 cut(s)	11
Bme1390I	CCNGG	1 cut(s)	105
Bme18I	GGWCC	1 cut(s)	23
BmgT120I	GGNCC	1 cut(s)	23
BmiI	GGNNCC	2 cut(s)	24, 25
BmrFI	CCNGG	1 cut(s)	105
BmsI	GCATC	2 cut(s)	63, 123
Bpu14I	TTCGAA	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	105
BsaHI	GRCGYC	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	109
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
BseDI	CCNNGG	1 cut(s)	109
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseRI	GAGGAG	5 cut(s)	168, 184, 187, 190, 193
BseXI	GCAGC	1 cut(s)	21
Bsh1236I	CGCG	1 cut(s)	168
BshFI	GGCC	2 cut(s)	108, 128
BsiSI	CCGG	1 cut(s)	105
BslFI	GGGAC	2 cut(s)	36, 65
BslI	CCNNNNNNNGG	1 cut(s)	110
BsmFI	GGGAC	2 cut(s)	36, 65
BsnI	GGCC	2 cut(s)	108, 128
Bsp119I	TTCGAA	1 cut(s)	80
BspACI	CCGC	2 cut(s)	91, 166
BspANI	GGCC	2 cut(s)	108, 128
BspFNI	CGCG	1 cut(s)	168
BspLI	GGNNCC	2 cut(s)	24, 25
BspT104I	TTCGAA	1 cut(s)	80
BssECI	CCNNGG	1 cut(s)	109
BssNI	GRCGYC	1 cut(s)	135
Bst6I	CTCTTC	1 cut(s)	211
BstACI	GRCGYC	1 cut(s)	135
BstAPI	GCANNNNNTGC	1 cut(s)	73
BstBI	TTCGAA	1 cut(s)	80
BstC8I	GCNNGC	2 cut(s)	14, 152
BstFNI	CGCG	1 cut(s)	168
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 125
BstSCI	CCNGG	1 cut(s)	103
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	21
BsuRI	GGCC	2 cut(s)	108, 128
BtgZI	GCGATG	1 cut(s)	100
BtsIMutI	CAGTG	1 cut(s)	211
Cac8I	GCNNGC	2 cut(s)	14, 152
Cfr13I	GGNCC	1 cut(s)	23
CseI	GACGC	2 cut(s)	124, 157
CviJI	RGCY	4 cut(s)	16, 88, 108, 128
CviKI_1	RGCY	4 cut(s)	16, 88, 108, 128
Eam1104I	CTCTTC	1 cut(s)	211
EarI	CTCTTC	1 cut(s)	211
EciI	GGCGGA	1 cut(s)	80
Eco47I	GGWCC	1 cut(s)	23
Eco57I	CTGAAG	1 cut(s)	25
EcoO109I	RGGNCCY	1 cut(s)	23
FaqI	GGGAC	2 cut(s)	36, 65
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	1 cut(s)	10
Fsp4HI	GCNGC	1 cut(s)	10
GluI	GCNGC	1 cut(s)	10
HaeIII	GGCC	2 cut(s)	108, 128
HapII	CCGG	1 cut(s)	105
HgaI	GACGC	2 cut(s)	124, 157
Hin1I	GRCGYC	1 cut(s)	135
HinfI	GANTC	1 cut(s)	82
HpaII	CCGG	1 cut(s)	105
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188III	TCNNGA	1 cut(s)	43
Hpy8I	GTNNAC	1 cut(s)	139
HpyAV	CCTTC	3 cut(s)	42, 139, 192
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 125
Hsp92I	GRCGYC	1 cut(s)	135
KflI	GGGWCCC	1 cut(s)	23
LmnI	GCTCC	1 cut(s)	93
LpnPI	CCDG	4 cut(s)	15, 28, 107, 118
Lsp1109I	GCAGC	1 cut(s)	21
LweI	GCATC	2 cut(s)	63, 123
MboII	GAAGA	3 cut(s)	31, 177, 198
MnlI	CCTC	7 cut(s)	54, 119, 189, 205, 208, 211, 214
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	1 cut(s)	105
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	2 cut(s)	73, 125
NciI	CCSGG	1 cut(s)	105
NlaIV	GGNNCC	2 cut(s)	24, 25
NmeAIII	GCCGAG	1 cut(s)	90
NspV	TTCGAA	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	82
PkrI	GCNGC	1 cut(s)	11
PpuMI	RGGWCCY	1 cut(s)	23
Psp5II	RGGWCCY	1 cut(s)	23
PspN4I	GGNNCC	2 cut(s)	24, 25
PspPI	GGNCC	1 cut(s)	23
PspPPI	RGGWCCY	1 cut(s)	23
SatI	GCNGC	1 cut(s)	10
Sau96I	GGNCC	1 cut(s)	23
ScrFI	CCNGG	1 cut(s)	105
SetI	ASST	1 cut(s)	90
SfaNI	GCATC	2 cut(s)	63, 123
SfuI	TTCGAA	1 cut(s)	80
SinI	GGWCC	1 cut(s)	23
SsiI	CCGC	2 cut(s)	91, 166
StyD4I	CCNGG	1 cut(s)	103
TaqI	TCGA	1 cut(s)	80
TfiI	GAWTC	1 cut(s)	82
TseI	GCWGC	1 cut(s)	9
VpaK11BI	GGWCC	1 cut(s)	23
XmiI	GTMKAC	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.