Rorug07G0179500

NADH dehydrogenase ubiquinone 1 beta subcomplex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0016686
Physical Location & Seq
Reverse (-)
14929410 .. 14931147
1738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0179500.1

Sequence Viewer

Length: 930 bp
ATGGGATCTCTCTTCACTCTATCACTCATACTGCTTTCATCCATATCATTAACATTTTCAAACAGTGAAGCTCAGAAGATCAAATCAGCTCGCCTTCTCGACCTTCTCATCCGAGACTACACCTTCAAGACCTATAAAACATACTCCAGGACAGGAACACTGCACAATGTTCATTTACCAGCAAACTTCTCTGGCATCACAGTTGATACAGCGAGATTCAGATGTGGCAGTCTCCGAAGGTACGGCGCGCAGGTAAAGGAATTTCATCTAGGCATTGGTGTGTCTGTGAATCCATGTGCAGAGAGGGTAATGGTAGTTACACAAAAATTGGGATATAATTGGTCATCTATATATTATGCCAACTATGACTTATCTGGGTACCAGCTTGTGTCCCCAATTTTAGGCCTATTAGCTTATAATGCTGGTACTGATGTGAACTTTAGCAACCCTTTTGAGGTAGGAATTCAAGCTCTAGAAAATCCCATCACTATAGACTTCAAAAACATCACAAGGGTGAACAATGAATTAGGTGCTACAAGGCCTTTATGTGCTAGCTTTGAAGGTGATGGCAAAGTGACACTAGCAAAGGAGGCTTCACCTTACATTTGTGTTGCGAAAAGGCATGGTCATTTCGGATTGGTGATTGAGAAGCCCTCGCCAGTTCCACTGAGGAAGAAGCTTAGCCAGTGGAAAGTGGTGGTTGGTAGCACAGTTGGGTGTGCAATAGGTATTTTTCTTTTGGGGTTGCTTCTGGTGGCAATGCTTGTGAAGGGGAAGAAGAAATCGAGGATCGTGGAGATGGAGAGAAGAGCTTATGAAGAAGAAGCTTTACAGGTATCAATGGTTGGACATGTTAGAGCTCCTACAGCTTCAGGGACACGAACTACTCCAGCGATTGAACAAGAGTATATACCTCCTCGTCCTCGTTGA

Protein Analysis

309

Amino Acids

34.09

Weight (kDa)

9.61

Isoelectric Point (pI)

29.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1191 PF06697 28 - 216 1.3e-63 Protein of unknown function (DUF1191)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14450 AT1G14450 AT2G02510
fragaria_vesca FvH4_5g27520
malus_domestica MD08G1249300.v1.1 MD15G1444100.v1.1
prunus_persica Prupe.1G586500_v2.0.a1 Prupe.1G586500_v2.0.a1
pyrus_communis pycom08g21580
rosa_chinensis RchiOBHm_Chr7g0218891
rosa_roxburghii Rroxscaffold_3G00240420
rosa_rugosa Rorug07G0179500
rosa_wichuraiana Rw7G027330 Rw7G028460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 417
Acc36I ACCTGC 1 cut(s) 241
Acc65I GGTACC 1 cut(s) 378
AccB1I GGYRCC 1 cut(s) 378
AccII CGCG 1 cut(s) 248
AclWI GGATC 2 cut(s) 13, 797
AcsI RAATTY 2 cut(s) 260, 462
AcuI CTGAAG 1 cut(s) 855
AfaI GTAC 3 cut(s) 242, 380, 427
AfiI CCNNNNNNNGG 2 cut(s) 401, 454
AflIII ACRYGT 1 cut(s) 850
AgsI TTSAA 6 cut(s) 60, 127, 467, 499, 560, 899
AjnI CCWGG 1 cut(s) 146
AleI CACNNNNGTG 1 cut(s) 512
Alw21I GWGCWC 1 cut(s) 862
Alw26I GTCTC 2 cut(s) 108, 236
AlwI GGATC 2 cut(s) 13, 797
AoxI GGCC 2 cut(s) 403, 539
ApoI RAATTY 2 cut(s) 260, 462
Asp718I GGTACC 1 cut(s) 378
AspLEI GCGC 2 cut(s) 248, 250
AsuHPI GGTGA 4 cut(s) 526, 575, 588, 652
AsuNHI GCTAGC 1 cut(s) 551
BaeI ACNNNNGTAYC 2 cut(s) 417, 450
BanI GGYRCC 1 cut(s) 378
BanII GRGCYC 1 cut(s) 862
BarI GAAGNNNNNNTAC 2 cut(s) 813, 845
Bbv12I GWGCWC 1 cut(s) 862
BccI CCATC 3 cut(s) 491, 560, 793
BceAI ACGGC 1 cut(s) 259
BciT130I CCWGG 1 cut(s) 148
BcoDI GTCTC 2 cut(s) 108, 236
BfaI CTAG 4 cut(s) 269, 473, 552, 581
BfmI CTRYAG 2 cut(s) 489, 864
BfuAI ACCTGC 1 cut(s) 241
BlpI GCTNAGC 1 cut(s) 680
Bme1390I CCNGG 1 cut(s) 148
BmiI GGNNCC 1 cut(s) 380
BmrFI CCNGG 1 cut(s) 148
BmsI GCATC 1 cut(s) 204
BmtI GCTAGC 1 cut(s) 555
BplI GAGNNNNNCTC 2 cut(s) 638, 670
BpmI CTGGAG 2 cut(s) 130, 873
Bpu1102I GCTNAGC 1 cut(s) 680
Bsc4I CCNNNNNNNGG 2 cut(s) 401, 454
Bse1I ACTGG 2 cut(s) 659, 685
Bse3DI GCAATG 1 cut(s) 765
BseBI CCWGG 1 cut(s) 148
BseGI GGATG 2 cut(s) 38, 108
BseLI CCNNNNNNNGG 2 cut(s) 401, 454
BseMI GCAATG 1 cut(s) 765
BseMII CTCAG 2 cut(s) 86, 659
BseNI ACTGG 2 cut(s) 659, 685
BsePI GCGCGC 1 cut(s) 246
BseRI GAGGAG 1 cut(s) 906
BsgI GTGCAG 2 cut(s) 146, 318
Bsh1236I CGCG 1 cut(s) 248
BshFI GGCC 2 cut(s) 405, 541
BshNI GGYRCC 1 cut(s) 378
BsiHKAI GWGCWC 1 cut(s) 862
BslFI GGGAC 2 cut(s) 376, 889
BslI CCNNNNNNNGG 2 cut(s) 401, 454
BsmAI GTCTC 2 cut(s) 108, 236
BsmFI GGGAC 2 cut(s) 376, 889
BsnI GGCC 2 cut(s) 405, 541
Bsp1286I GDGCHC 1 cut(s) 862
Bsp143I GATC 3 cut(s) 5, 78, 789
Bsp1720I GCTNAGC 1 cut(s) 680
BspANI GGCC 2 cut(s) 405, 541
BspCNI CTCAG 2 cut(s) 85, 660
BspFNI CGCG 1 cut(s) 248
BspLI GGNNCC 1 cut(s) 380
BspMI ACCTGC 1 cut(s) 241
BspOI GCTAGC 1 cut(s) 555
BspPI GGATC 2 cut(s) 13, 797
BspQI GCTCTTC 1 cut(s) 802
BspT107I GGYRCC 1 cut(s) 378
BsrDI GCAATG 1 cut(s) 765
BsrI ACTGG 2 cut(s) 659, 685
BssHII GCGCGC 1 cut(s) 246
BssMI GATC 3 cut(s) 5, 78, 789
Bst2UI CCWGG 1 cut(s) 148
Bst4CI ACNGT 3 cut(s) 65, 202, 712
Bst6I CTCTTC 2 cut(s) 17, 802
BstC8I GCNNGC 3 cut(s) 91, 248, 553
BstDEI CTNAG 3 cut(s) 72, 668, 680
BstF5I GGATG 2 cut(s) 38, 108
BstFNI CGCG 1 cut(s) 248
BstHHI GCGC 2 cut(s) 248, 250
BstKTI GATC 3 cut(s) 8, 81, 792
BstMAI GTCTC 2 cut(s) 108, 236
BstMBI GATC 3 cut(s) 5, 78, 789
BstMWI GCNNNNNNNGC 3 cut(s) 419, 590, 866
BstNI CCWGG 1 cut(s) 148
BstNSI RCATGY 1 cut(s) 854
BstSCI CCNGG 1 cut(s) 146
BstSFI CTRYAG 2 cut(s) 489, 864
BstUI CGCG 1 cut(s) 248
BstX2I RGATCY 1 cut(s) 5
BstYI RGATCY 1 cut(s) 5
BsuRI GGCC 2 cut(s) 405, 541
BtsCI GGATG 2 cut(s) 38, 108
BtsI GCAGTG 1 cut(s) 158
BtsIMutI CAGTG 4 cut(s) 70, 158, 665, 692
BveI ACCTGC 1 cut(s) 241
Cac8I GCNNGC 3 cut(s) 91, 248, 553
CfoI GCGC 2 cut(s) 248, 250
Csp6I GTAC 3 cut(s) 241, 379, 426
CviAII CATG 3 cut(s) 294, 623, 851
CviQI GTAC 3 cut(s) 241, 379, 426
DdeI CTNAG 3 cut(s) 72, 668, 680
DpnI GATC 3 cut(s) 7, 80, 791
DpnII GATC 3 cut(s) 5, 78, 789
Eam1104I CTCTTC 2 cut(s) 17, 802
EarI CTCTTC 2 cut(s) 17, 802
Ecl136II GAGCTC 1 cut(s) 860
Eco147I AGGCCT 2 cut(s) 405, 541
Eco24I GRGCYC 1 cut(s) 862
Eco53kI GAGCTC 1 cut(s) 860
Eco57I CTGAAG 1 cut(s) 855
EcoICRI GAGCTC 1 cut(s) 860
EcoRI GAATTC 1 cut(s) 462
EcoRII CCWGG 1 cut(s) 146
EcoT38I GRGCYC 1 cut(s) 862
FaeI CATG 3 cut(s) 297, 626, 854
FaqI GGGAC 2 cut(s) 376, 889
FatI CATG 3 cut(s) 293, 622, 850
FokI GGATG 2 cut(s) 25, 95
FriOI GRGCYC 1 cut(s) 862
FspBI CTAG 4 cut(s) 269, 473, 552, 581
GlaI GCGC 2 cut(s) 247, 249
GsuI CTGGAG 2 cut(s) 130, 873
HaeIII GGCC 2 cut(s) 405, 541
HhaI GCGC 2 cut(s) 248, 250
Hin1II CATG 3 cut(s) 297, 626, 854
Hin6I GCGC 2 cut(s) 246, 248
HinP1I GCGC 2 cut(s) 246, 248
HindIII AAGCTT 2 cut(s) 677, 825
HinfI GANTC 2 cut(s) 216, 289
HphI GGTGA 4 cut(s) 526, 575, 588, 652
Hpy166II GTNNAC 2 cut(s) 436, 517
Hpy188I TCNGA 5 cut(s) 75, 113, 221, 236, 635
Hpy188III TCNNGA 3 cut(s) 98, 127, 473
Hpy8I GTNNAC 2 cut(s) 436, 517
HpyAV CCTTC 6 cut(s) 104, 113, 133, 231, 554, 763
HpyCH4III ACNGT 3 cut(s) 65, 202, 712
HpyCH4V TGCA 3 cut(s) 163, 299, 722
HpyF10VI GCNNNNNNNGC 3 cut(s) 419, 590, 866
HpyF3I CTNAG 3 cut(s) 72, 668, 680
Hsp92II CATG 3 cut(s) 297, 626, 854
HspAI GCGC 2 cut(s) 246, 248
KpnI GGTACC 1 cut(s) 382
Kzo9I GATC 3 cut(s) 5, 78, 789
LguI GCTCTTC 1 cut(s) 802
LmnI GCTCC 1 cut(s) 865
LweI GCATC 1 cut(s) 204
MaeI CTAG 4 cut(s) 269, 473, 552, 581
MaeIII GTNAC 2 cut(s) 316, 574
MalI GATC 3 cut(s) 7, 80, 791
MboI GATC 3 cut(s) 5, 78, 789
MboII GAAGA 8 cut(s) 4, 88, 685, 787, 790, 819, 830, 833
MflI RGATCY 1 cut(s) 5
MhlI GDGCHC 1 cut(s) 862
MluCI AATT 6 cut(s) 260, 326, 337, 396, 462, 524
MmeI TCCRAC 1 cut(s) 826
MnlI CCTC 8 cut(s) 297, 448, 583, 663, 664, 780, 924, 927
MseI TTAA 1 cut(s) 50
MslI CAYNNNNRTG 2 cut(s) 278, 512
MspR9I CCNGG 1 cut(s) 148
MvaI CCWGG 1 cut(s) 148
MvnI CGCG 1 cut(s) 248
MwoI GCNNNNNNNGC 3 cut(s) 419, 590, 866
NdeII GATC 3 cut(s) 5, 78, 789
NheI GCTAGC 1 cut(s) 551
NlaIII CATG 3 cut(s) 297, 626, 854
NlaIV GGNNCC 1 cut(s) 380
NmuCI GTSAC 1 cut(s) 574
NspI RCATGY 1 cut(s) 854
OliI CACNNNNGTG 1 cut(s) 512
PauI GCGCGC 1 cut(s) 246
PceI AGGCCT 2 cut(s) 405, 541
PciI ACATGT 1 cut(s) 850
PciSI GCTCTTC 1 cut(s) 802
PfeI GAWTC 2 cut(s) 216, 289
PfoI TCCNGGA 1 cut(s) 146
PscI ACATGT 1 cut(s) 850
PsiI TTATAA 1 cut(s) 417
Psp124BI GAGCTC 1 cut(s) 862
Psp6I CCWGG 1 cut(s) 146
PspGI CCWGG 1 cut(s) 146
PspN4I GGNNCC 1 cut(s) 380
PsuI RGATCY 1 cut(s) 5
PteI GCGCGC 1 cut(s) 246
RsaI GTAC 3 cut(s) 242, 380, 427
RsaNI GTAC 3 cut(s) 241, 379, 426
RseI CAYNNNNRTG 2 cut(s) 278, 512
SacI GAGCTC 1 cut(s) 862
SapI GCTCTTC 1 cut(s) 802
SaqAI TTAA 1 cut(s) 50
Sau3AI GATC 3 cut(s) 5, 78, 789
ScrFI CCNGG 1 cut(s) 148
SduI GDGCHC 1 cut(s) 862
SfaNI GCATC 1 cut(s) 204
SfcI CTRYAG 2 cut(s) 489, 864
SmiMI CAYNNNNRTG 2 cut(s) 278, 512
Sse9I AATT 6 cut(s) 260, 326, 337, 396, 462, 524
SseBI AGGCCT 2 cut(s) 405, 541
SspMI CTAG 4 cut(s) 269, 473, 552, 581
SstI GAGCTC 1 cut(s) 862
StuI AGGCCT 2 cut(s) 405, 541
StyD4I CCNGG 1 cut(s) 146
TaaI ACNGT 3 cut(s) 65, 202, 712
TaqI TCGA 2 cut(s) 99, 785
TasI AATT 6 cut(s) 260, 326, 337, 396, 462, 524
TfiI GAWTC 2 cut(s) 216, 289
Tru1I TTAA 1 cut(s) 50
Tru9I TTAA 1 cut(s) 50
TscAI CASTG 4 cut(s) 70, 165, 672, 692
TseFI GTSAC 1 cut(s) 574
Tsp45I GTSAC 1 cut(s) 574
TspDTI ATGAA 5 cut(s) 27, 161, 254, 537, 831
TspRI CASTG 4 cut(s) 70, 165, 672, 692
XapI RAATTY 2 cut(s) 260, 462
XbaI TCTAGA 1 cut(s) 472
XceI RCATGY 1 cut(s) 854
XspI CTAG 4 cut(s) 269, 473, 552, 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.