Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0016686

Physical Location & Seq

Genomic Coordinates Reverse (-)

18757716 .. 18762065

Gene Structure 4350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g27520.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGGGAAGCAGCAAGCCGCTGGGAACCACCGGAGAGTTTTTCAGGAGGAGGGACGAGTGGAGGAAGCACCCCATGCTTTCGAATCAGCTCCGCCACGCCACTCCTGGCCTCGGCATCGCTCTCGTCGCCTTCGGCGTCTACTTGGTCGGCGAGCAGTTCTACAACCGCGTCATCGCTCCTCCTTCTTCCTCTTCTCACTCATCCTCTTCTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NDUF_B12

Protein Analysis

72

Amino Acids

7.84

Weight (kDa)

10.4

Isoelectric Point (pI)

51.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDUF_B12	PF08122	16 - 54	3.4e-08	NADH-ubiquinone oxidoreductase B12 subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016686)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14450 AT1G14450 AT2G02510
fragaria_vesca	FvH4_5g27520
malus_domestica	MD08G1249300.v1.1 MD15G1444100.v1.1
prunus_persica	Prupe.1G586500_v2.0.a1 Prupe.1G586500_v2.0.a1
pyrus_communis	pycom08g21580
rosa_chinensis	RchiOBHm_Chr7g0218891
rosa_roxburghii	Rroxscaffold_3G00240420
rosa_rugosa	Rorug07G0179500
rosa_wichuraiana	Rw7G027330 Rw7G028460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	138
AccII	CGCG	1 cut(s)	168
AciI	CCGC	3 cut(s)	17, 91, 166
AcyI	GRCGYC	1 cut(s)	135
AfiI	CCNNNNNNNGG	1 cut(s)	110
AjnI	CCWGG	1 cut(s)	103
AluBI	AGCT	1 cut(s)	88
AluI	AGCT	1 cut(s)	88
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	1 cut(s)	9
AsuII	TTCGAA	1 cut(s)	80
BbvI	GCAGC	1 cut(s)	21
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BciT130I	CCWGG	1 cut(s)	105
BisI	GCNGC	2 cut(s)	10, 17
BlsI	GCNGC	2 cut(s)	11, 18
Bme1390I	CCNGG	1 cut(s)	105
BmiI	GGNNCC	1 cut(s)	25
BmrFI	CCNGG	1 cut(s)	105
BmsI	GCATC	1 cut(s)	123
Bpu14I	TTCGAA	1 cut(s)	80
BsaHI	GRCGYC	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	109
BsaWI	WCCGGW	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
BseBI	CCWGG	1 cut(s)	105
BseDI	CCNNGG	1 cut(s)	109
BseGI	GGATG	1 cut(s)	200
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseRI	GAGGAG	2 cut(s)	61, 168
BseXI	GCAGC	1 cut(s)	21
BseYI	CCCAGC	1 cut(s)	19
Bsh1236I	CGCG	1 cut(s)	168
BshFI	GGCC	1 cut(s)	108
BsiSI	CCGG	1 cut(s)	30
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	110
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	1 cut(s)	108
Bsp119I	TTCGAA	1 cut(s)	80
BspACI	CCGC	3 cut(s)	17, 91, 166
BspANI	GGCC	1 cut(s)	108
BspFNI	CGCG	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	25
BspT104I	TTCGAA	1 cut(s)	80
BssECI	CCNNGG	1 cut(s)	109
BssNI	GRCGYC	1 cut(s)	135
Bst2UI	CCWGG	1 cut(s)	105
Bst6I	CTCTTC	2 cut(s)	196, 211
BstACI	GRCGYC	1 cut(s)	135
BstAPI	GCANNNNNTGC	1 cut(s)	73
BstBI	TTCGAA	1 cut(s)	80
BstC8I	GCNNGC	2 cut(s)	14, 152
BstF5I	GGATG	1 cut(s)	200
BstFNI	CGCG	1 cut(s)	168
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 125
BstNI	CCWGG	1 cut(s)	105
BstSCI	CCNGG	1 cut(s)	103
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	21
BsuRI	GGCC	1 cut(s)	108
BtgZI	GCGATG	2 cut(s)	100, 157
BtsCI	GGATG	1 cut(s)	200
BtsIMutI	CAGTG	1 cut(s)	211
Cac8I	GCNNGC	2 cut(s)	14, 152
CseI	GACGC	2 cut(s)	124, 157
CviAII	CATG	1 cut(s)	73
CviJI	RGCY	3 cut(s)	16, 88, 108
CviKI_1	RGCY	3 cut(s)	16, 88, 108
Eam1104I	CTCTTC	2 cut(s)	196, 211
EarI	CTCTTC	2 cut(s)	196, 211
EciI	GGCGGA	1 cut(s)	80
EcoRII	CCWGG	1 cut(s)	103
FaeI	CATG	1 cut(s)	76
FaiI	YATR	1 cut(s)	74
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	1 cut(s)	72
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	2 cut(s)	10, 17
FokI	GGATG	1 cut(s)	187
Fsp4HI	GCNGC	2 cut(s)	10, 17
GluI	GCNGC	2 cut(s)	10, 17
GsaI	CCCAGC	1 cut(s)	23
HaeIII	GGCC	1 cut(s)	108
HapII	CCGG	1 cut(s)	30
HgaI	GACGC	2 cut(s)	124, 157
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	1 cut(s)	76
HinfI	GANTC	1 cut(s)	82
HpaII	CCGG	1 cut(s)	30
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188III	TCNNGA	1 cut(s)	43
Hpy8I	GTNNAC	1 cut(s)	139
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	2 cut(s)	139, 192
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 125
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	1 cut(s)	76
LmnI	GCTCC	2 cut(s)	93, 181
LpnPI	CCDG	5 cut(s)	5, 28, 43, 90, 117
Lsp1109I	GCAGC	1 cut(s)	21
LweI	GCATC	1 cut(s)	123
MboII	GAAGA	3 cut(s)	177, 183, 198
MnlI	CCTC	7 cut(s)	39, 42, 54, 119, 189, 199, 214
MspA1I	CMGCKG	1 cut(s)	19
MspI	CCGG	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	105
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	2 cut(s)	73, 125
NlaIII	CATG	1 cut(s)	76
NlaIV	GGNNCC	1 cut(s)	25
NmeAIII	GCCGAG	1 cut(s)	90
NspV	TTCGAA	1 cut(s)	80
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	82
PkrI	GCNGC	2 cut(s)	11, 18
Psp6I	CCWGG	1 cut(s)	103
PspFI	CCCAGC	1 cut(s)	19
PspGI	CCWGG	1 cut(s)	103
PspN4I	GGNNCC	1 cut(s)	25
SatI	GCNGC	2 cut(s)	10, 17
ScrFI	CCNGG	1 cut(s)	105
SetI	ASST	1 cut(s)	90
SfaNI	GCATC	1 cut(s)	123
SfuI	TTCGAA	1 cut(s)	80
SsiI	CCGC	3 cut(s)	17, 91, 166
StyD4I	CCNGG	1 cut(s)	103
TaqI	TCGA	1 cut(s)	80
TauI	GCSGC	1 cut(s)	19
TfiI	GAWTC	1 cut(s)	82
TseI	GCWGC	1 cut(s)	9
XcmI	CCANNNNNNNNNTGG	1 cut(s)	101
XmiI	GTMKAC	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.