Prupe.1G586500_v2.0.a1

NADH dehydrogenase ubiquinone 1 beta subcomplex subunit

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
47614399 .. 47616401
2003 bp
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UTR
Exon/CDS
Intron
Prupe.1G586500.1

Sequence Viewer

Length: 255 bp
ATGGGGAGTAGTAGCAAGAAGGCGCTGGGGACGACAGGGGAGTTCTTCAGGAGGAGGGACGAGTGGAGGAAGCATCCGATGCTGACGAATCAGCTCCGCCACGCCACTCCCGGCCTCGGCATCGCTCTGGTGGCCTTCGGCGTCTACCTCGTCGGCGAGCAAGTCTACAACCGCCTCATTTCTCCTTCTGCTGCTTCCTCATCTCACGCTCATTCTCACTCTCATTCCGCCTCTACCACCTCTGCTACTCACTGA

Protein Analysis

85

Amino Acids

9.09

Weight (kDa)

10.51

Isoelectric Point (pI)

31.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14450 AT1G14450 AT2G02510
fragaria_vesca FvH4_5g27520
malus_domestica MD08G1249300.v1.1 MD15G1444100.v1.1
prunus_persica Prupe.1G586500_v2.0.a1 Prupe.1G586500_v2.0.a1
pyrus_communis pycom08g21580
rosa_chinensis RchiOBHm_Chr7g0218891
rosa_roxburghii Rroxscaffold_3G00240420
rosa_rugosa Rorug07G0179500
rosa_wichuraiana Rw7G027330 Rw7G028460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 144, 165
AciI CCGC 3 cut(s) 97, 172, 228
AcuI CTGAAG 1 cut(s) 31
AcyI GRCGYC 1 cut(s) 141
AfiI CCNNNNNNNGG 1 cut(s) 116
AluBI AGCT 1 cut(s) 94
AluI AGCT 1 cut(s) 94
AoxI GGCC 2 cut(s) 112, 132
ApeKI GCWGC 1 cut(s) 191
AspLEI GCGC 1 cut(s) 25
AsuC2I CCSGG 1 cut(s) 111
BbvI GCAGC 1 cut(s) 178
BcnI CCSGG 1 cut(s) 111
BfoI RGCGCY 1 cut(s) 26
BisI GCNGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 193
Bme1390I CCNGG 1 cut(s) 111
BmrFI CCNGG 1 cut(s) 111
BmsI GCATC 3 cut(s) 69, 82, 129
BpuMI CCSGG 1 cut(s) 111
BsaHI GRCGYC 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 115
Bsc4I CCNNNNNNNGG 1 cut(s) 116
BseDI CCNNGG 1 cut(s) 115
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 116
BseRI GAGGAG 1 cut(s) 67
BseXI GCAGC 1 cut(s) 178
BseYI CCCAGC 1 cut(s) 25
BshFI GGCC 2 cut(s) 114, 134
BsiSI CCGG 1 cut(s) 111
BslFI GGGAC 2 cut(s) 43, 71
BslI CCNNNNNNNGG 1 cut(s) 116
BsmFI GGGAC 2 cut(s) 43, 71
BsnI GGCC 2 cut(s) 114, 134
BspACI CCGC 3 cut(s) 97, 172, 228
BspANI GGCC 2 cut(s) 114, 134
BssECI CCNNGG 1 cut(s) 115
BssNI GRCGYC 1 cut(s) 141
BstACI GRCGYC 1 cut(s) 141
BstAPI GCANNNNNTGC 1 cut(s) 79
BstC8I GCNNGC 1 cut(s) 158
BstF5I GGATG 1 cut(s) 73
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 1 cut(s) 25
BstMWI GCNNNNNNNGC 2 cut(s) 79, 131
BstSCI CCNGG 1 cut(s) 109
BstV1I GCAGC 1 cut(s) 178
BsuRI GGCC 2 cut(s) 114, 134
BtgZI GCGATG 1 cut(s) 106
BtsCI GGATG 1 cut(s) 73
BtsIMutI CAGTG 1 cut(s) 250
Cac8I GCNNGC 1 cut(s) 158
CfoI GCGC 1 cut(s) 25
CseI GACGC 1 cut(s) 130
CviJI RGCY 3 cut(s) 94, 114, 134
CviKI_1 RGCY 3 cut(s) 94, 114, 134
EciI GGCGGA 2 cut(s) 86, 217
Eco57I CTGAAG 1 cut(s) 31
FaqI GGGAC 2 cut(s) 43, 71
FblI GTMKAC 2 cut(s) 144, 165
Fnu4HI GCNGC 1 cut(s) 192
FokI GGATG 1 cut(s) 60
Fsp4HI GCNGC 1 cut(s) 192
GlaI GCGC 1 cut(s) 24
GluI GCNGC 1 cut(s) 192
GsaI CCCAGC 1 cut(s) 29
HaeII RGCGCY 1 cut(s) 26
HaeIII GGCC 2 cut(s) 114, 134
HapII CCGG 1 cut(s) 111
HgaI GACGC 1 cut(s) 130
HhaI GCGC 1 cut(s) 25
Hin1I GRCGYC 1 cut(s) 141
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HinfI GANTC 1 cut(s) 88
HpaII CCGG 1 cut(s) 111
Hpy166II GTNNAC 2 cut(s) 145, 166
Hpy188I TCNGA 1 cut(s) 78
Hpy188III TCNNGA 1 cut(s) 49
Hpy8I GTNNAC 2 cut(s) 145, 166
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 3 cut(s) 13, 145, 195
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 131
Hsp92I GRCGYC 1 cut(s) 141
HspAI GCGC 1 cut(s) 23
LmnI GCTCC 1 cut(s) 99
LpnPI CCDG 5 cut(s) 11, 21, 34, 113, 124
Lsp1109I GCAGC 1 cut(s) 178
LweI GCATC 3 cut(s) 69, 82, 129
MboII GAAGA 1 cut(s) 37
MnlI CCTC 9 cut(s) 45, 48, 60, 125, 158, 185, 208, 241, 250
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 1 cut(s) 111
MwoI GCNNNNNNNGC 2 cut(s) 79, 131
NciI CCSGG 1 cut(s) 111
NmeAIII GCCGAG 1 cut(s) 96
PfeI GAWTC 1 cut(s) 88
PkrI GCNGC 1 cut(s) 193
PspFI CCCAGC 1 cut(s) 25
SatI GCNGC 1 cut(s) 192
ScrFI CCNGG 1 cut(s) 111
SetI ASST 3 cut(s) 96, 150, 242
SfaNI GCATC 3 cut(s) 69, 82, 129
SsiI CCGC 3 cut(s) 97, 172, 228
StyD4I CCNGG 1 cut(s) 109
TfiI GAWTC 1 cut(s) 88
TseI GCWGC 1 cut(s) 191
XmiI GTMKAC 2 cut(s) 144, 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.