Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0016686

Physical Location & Seq

Genomic Coordinates Reverse (-)

38787631 .. 38787825

Gene Structure 195 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G028460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGGGAAGCAGCAAGCCGTTGGGACCGACTGGAGAGTTCTTCAGGAAGAGGGACGAGTGGAGGAAGCACCCGATACTTTCGAATCAGCTCCGCCACGCGACTCCCGGCCTCGGCGTCGCTCTGGTGGCCTTCGGCGTCTACTTGGTCGGCGAGCAGTTCTACAACCGCGTCATCTCTTCTCCTTCTTCTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NDUF_B12

Protein Analysis

64

Amino Acids

7.13

Weight (kDa)

10.15

Isoelectric Point (pI)

38.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDUF_B12	PF08122	16 - 55	2.2e-07	NADH-ubiquinone oxidoreductase B12 subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0016686)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14450 AT1G14450 AT2G02510
fragaria_vesca	FvH4_5g27520
malus_domestica	MD08G1249300.v1.1 MD15G1444100.v1.1
prunus_persica	Prupe.1G586500_v2.0.a1 Prupe.1G586500_v2.0.a1
pyrus_communis	pycom08g21580
rosa_chinensis	RchiOBHm_Chr7g0218891
rosa_roxburghii	Rroxscaffold_3G00240420
rosa_rugosa	Rorug07G0179500
rosa_wichuraiana	Rw7G027330 Rw7G028460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	138
AccII	CGCG	2 cut(s)	98, 168
AciI	CCGC	2 cut(s)	91, 166
AcuI	CTGAAG	1 cut(s)	25
AcyI	GRCGYC	2 cut(s)	114, 135
AfiI	CCNNNNNNNGG	1 cut(s)	110
AluBI	AGCT	1 cut(s)	88
AluI	AGCT	1 cut(s)	88
AoxI	GGCC	2 cut(s)	106, 126
ApeKI	GCWGC	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	23
AsuC2I	CCSGG	1 cut(s)	105
AsuII	TTCGAA	1 cut(s)	80
AvaII	GGWCC	1 cut(s)	23
BbvI	GCAGC	1 cut(s)	21
BcnI	CCSGG	1 cut(s)	105
BisI	GCNGC	1 cut(s)	10
BlsI	GCNGC	1 cut(s)	11
Bme1390I	CCNGG	1 cut(s)	105
Bme18I	GGWCC	1 cut(s)	23
BmgT120I	GGNCC	1 cut(s)	23
BmiI	GGNNCC	1 cut(s)	24
BmrFI	CCNGG	1 cut(s)	105
BpmI	CTGGAG	1 cut(s)	51
Bpu14I	TTCGAA	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	105
BsaHI	GRCGYC	2 cut(s)	114, 135
BsaJI	CCNNGG	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
Bse1I	ACTGG	1 cut(s)	34
BseDI	CCNNGG	1 cut(s)	109
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseNI	ACTGG	1 cut(s)	34
BseXI	GCAGC	1 cut(s)	21
Bsh1236I	CGCG	2 cut(s)	98, 168
BshFI	GGCC	2 cut(s)	108, 128
BsiSI	CCGG	1 cut(s)	105
BslFI	GGGAC	2 cut(s)	36, 65
BslI	CCNNNNNNNGG	1 cut(s)	110
BsmFI	GGGAC	2 cut(s)	36, 65
BsnI	GGCC	2 cut(s)	108, 128
Bsp119I	TTCGAA	1 cut(s)	80
BspACI	CCGC	2 cut(s)	91, 166
BspANI	GGCC	2 cut(s)	108, 128
BspFNI	CGCG	2 cut(s)	98, 168
BspLI	GGNNCC	1 cut(s)	24
BspT104I	TTCGAA	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	109
BssNI	GRCGYC	2 cut(s)	114, 135
Bst6I	CTCTTC	2 cut(s)	41, 181
BstACI	GRCGYC	2 cut(s)	114, 135
BstBI	TTCGAA	1 cut(s)	80
BstC8I	GCNNGC	2 cut(s)	14, 152
BstFNI	CGCG	2 cut(s)	98, 168
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	103
BstUI	CGCG	2 cut(s)	98, 168
BstV1I	GCAGC	1 cut(s)	21
BsuRI	GGCC	2 cut(s)	108, 128
BtsIMutI	CAGTG	1 cut(s)	190
Cac8I	GCNNGC	2 cut(s)	14, 152
Cfr13I	GGNCC	1 cut(s)	23
CseI	GACGC	3 cut(s)	103, 124, 157
CviJI	RGCY	4 cut(s)	16, 88, 108, 128
CviKI_1	RGCY	4 cut(s)	16, 88, 108, 128
Eam1104I	CTCTTC	2 cut(s)	41, 181
EarI	CTCTTC	2 cut(s)	41, 181
EciI	GGCGGA	1 cut(s)	80
Eco47I	GGWCC	1 cut(s)	23
Eco57I	CTGAAG	1 cut(s)	25
FaqI	GGGAC	2 cut(s)	36, 65
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	1 cut(s)	10
Fsp4HI	GCNGC	1 cut(s)	10
GluI	GCNGC	1 cut(s)	10
GsuI	CTGGAG	1 cut(s)	51
HaeIII	GGCC	2 cut(s)	108, 128
HapII	CCGG	1 cut(s)	105
HgaI	GACGC	3 cut(s)	103, 124, 157
Hin1I	GRCGYC	2 cut(s)	114, 135
HinfI	GANTC	2 cut(s)	82, 100
HpaII	CCGG	1 cut(s)	105
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188III	TCNNGA	1 cut(s)	43
Hpy8I	GTNNAC	1 cut(s)	139
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	2 cut(s)	139, 192
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
Hsp92I	GRCGYC	2 cut(s)	114, 135
LmnI	GCTCC	1 cut(s)	93
LpnPI	CCDG	4 cut(s)	15, 28, 107, 118
Lsp1109I	GCAGC	1 cut(s)	21
MboII	GAAGA	4 cut(s)	31, 58, 168, 177
MlyI	GAGTC	1 cut(s)	94
MnlI	CCTC	3 cut(s)	42, 54, 119
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	1 cut(s)	105
MvnI	CGCG	2 cut(s)	98, 168
MwoI	GCNNNNNNNGC	1 cut(s)	125
NciI	CCSGG	1 cut(s)	105
NlaIV	GGNNCC	1 cut(s)	24
NmeAIII	GCCGAG	1 cut(s)	90
NspV	TTCGAA	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	82
PkrI	GCNGC	1 cut(s)	11
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
PspN4I	GGNNCC	1 cut(s)	24
PspPI	GGNCC	1 cut(s)	23
SatI	GCNGC	1 cut(s)	10
Sau96I	GGNCC	1 cut(s)	23
SchI	GAGTC	1 cut(s)	94
ScrFI	CCNGG	1 cut(s)	105
SetI	ASST	1 cut(s)	90
SfuI	TTCGAA	1 cut(s)	80
SinI	GGWCC	1 cut(s)	23
SsiI	CCGC	2 cut(s)	91, 166
StyD4I	CCNGG	1 cut(s)	103
TaqI	TCGA	1 cut(s)	80
TaqII	GACCGA	1 cut(s)	40
TfiI	GAWTC	1 cut(s)	82
TseI	GCWGC	1 cut(s)	9
VpaK11BI	GGWCC	1 cut(s)	23
XmiI	GTMKAC	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.