Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0016686

Physical Location & Seq

Genomic Coordinates Reverse (-)

54457040 .. 54459102

Gene Structure 2063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1444100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGGTGGGAGTAAGAAGGCGCTGGGGACGACAGGGGAGTTCTTCAGGAGGAGGGACGAGTGGAGGAAGCATCCGATGCTCTCTAATCAGCTCCGCCACGCCACGCCCGGCCTTGGCATCGCTCTTGTTGCATTCGGCGTCTACCTCGTCGGCGAGCAGGTCTACGACCGCCTCGTCGCTCCATCCCCCTCCTCCTCTCATCACGCCCACTCTCATTCCGTCTCTTCAACCTCCGCTACTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NDUF_B12

Protein Analysis

82

Amino Acids

8.81

Weight (kDa)

10.15

Isoelectric Point (pI)

40.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDUF_B12	PF08122	17 - 68	4.1e-08	NADH-ubiquinone oxidoreductase B12 subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016686)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14450 AT1G14450 AT2G02510
fragaria_vesca	FvH4_5g27520
malus_domestica	MD08G1249300.v1.1 MD15G1444100.v1.1
prunus_persica	Prupe.1G586500_v2.0.a1 Prupe.1G586500_v2.0.a1
pyrus_communis	pycom08g21580
rosa_chinensis	RchiOBHm_Chr7g0218891
rosa_roxburghii	Rroxscaffold_3G00240420
rosa_rugosa	Rorug07G0179500
rosa_wichuraiana	Rw7G027330 Rw7G028460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	173
Acc36I	ACCTGC	1 cut(s)	148
AccI	GTMKAC	2 cut(s)	141, 162
AciI	CCGC	3 cut(s)	94, 169, 234
AcuI	CTGAAG	1 cut(s)	28
AcyI	GRCGYC	1 cut(s)	138
AfiI	CCNNNNNNNGG	1 cut(s)	113
AgsI	TTSAA	1 cut(s)	228
AluBI	AGCT	1 cut(s)	91
AluI	AGCT	1 cut(s)	91
Alw26I	GTCTC	1 cut(s)	226
AoxI	GGCC	1 cut(s)	109
AspLEI	GCGC	1 cut(s)	22
AsuC2I	CCSGG	1 cut(s)	108
BccI	CCATC	1 cut(s)	190
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	1 cut(s)	226
BfoI	RGCGCY	1 cut(s)	23
BfuAI	ACCTGC	1 cut(s)	148
Bme1390I	CCNGG	1 cut(s)	108
BmrFI	CCNGG	1 cut(s)	108
BmsI	GCATC	3 cut(s)	66, 79, 126
BpuMI	CCSGG	1 cut(s)	108
BsaHI	GRCGYC	1 cut(s)	138
BsaJI	CCNNGG	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
BseDI	CCNNGG	1 cut(s)	112
BseGI	GGATG	2 cut(s)	70, 182
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseRI	GAGGAG	3 cut(s)	64, 181, 184
BseYI	CCCAGC	1 cut(s)	22
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	1 cut(s)	111
BsiEI	CGRYCG	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	108
BslFI	GGGAC	2 cut(s)	40, 68
BslI	CCNNNNNNNGG	1 cut(s)	113
BsmAI	GTCTC	1 cut(s)	226
BsmBI	CGTCTC	1 cut(s)	226
BsmFI	GGGAC	2 cut(s)	40, 68
BsmI	GAATGC	1 cut(s)	131
BsnI	GGCC	1 cut(s)	111
BspACI	CCGC	3 cut(s)	94, 169, 234
BspANI	GGCC	1 cut(s)	111
BspMI	ACCTGC	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	112
BssNI	GRCGYC	1 cut(s)	138
BssT1I	CCWWGG	1 cut(s)	112
Bst6I	CTCTTC	1 cut(s)	229
BstACI	GRCGYC	1 cut(s)	138
BstAPI	GCANNNNNTGC	1 cut(s)	76
BstC8I	GCNNGC	1 cut(s)	155
BstF5I	GGATG	2 cut(s)	70, 182
BstH2I	RGCGCY	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	22
BstMAI	GTCTC	1 cut(s)	226
BstMCI	CGRYCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 128
BstSCI	CCNGG	1 cut(s)	106
BsuRI	GGCC	1 cut(s)	111
BtgZI	GCGATG	1 cut(s)	103
BtsCI	GGATG	2 cut(s)	70, 182
BtsIMutI	CAGTG	1 cut(s)	241
BveI	ACCTGC	1 cut(s)	148
Cac8I	GCNNGC	1 cut(s)	155
CfoI	GCGC	1 cut(s)	22
CseI	GACGC	1 cut(s)	127
CviJI	RGCY	2 cut(s)	91, 111
CviKI_1	RGCY	2 cut(s)	91, 111
DrdI	GACNNNNNNGTC	1 cut(s)	173
DseDI	GACNNNNNNGTC	1 cut(s)	173
Eam1104I	CTCTTC	1 cut(s)	229
EarI	CTCTTC	1 cut(s)	229
EciI	GGCGGA	1 cut(s)	83
Eco130I	CCWWGG	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	112
ErhI	CCWWGG	1 cut(s)	112
Esp3I	CGTCTC	1 cut(s)	226
FaqI	GGGAC	2 cut(s)	40, 68
FblI	GTMKAC	2 cut(s)	141, 162
FokI	GGATG	2 cut(s)	57, 169
GlaI	GCGC	1 cut(s)	21
GsaI	CCCAGC	1 cut(s)	26
HaeII	RGCGCY	1 cut(s)	23
HaeIII	GGCC	1 cut(s)	111
HapII	CCGG	1 cut(s)	108
HgaI	GACGC	1 cut(s)	127
HhaI	GCGC	1 cut(s)	22
Hin1I	GRCGYC	1 cut(s)	138
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HpaII	CCGG	1 cut(s)	108
Hpy166II	GTNNAC	2 cut(s)	142, 163
Hpy188I	TCNGA	1 cut(s)	75
Hpy188III	TCNNGA	1 cut(s)	46
Hpy8I	GTNNAC	2 cut(s)	142, 163
Hpy99I	CGWCG	2 cut(s)	152, 179
HpyAV	CCTTC	1 cut(s)	10
HpyCH4V	TGCA	1 cut(s)	131
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 128
Hsp92I	GRCGYC	1 cut(s)	138
HspAI	GCGC	1 cut(s)	20
LmnI	GCTCC	2 cut(s)	96, 184
LpnPI	CCDG	5 cut(s)	8, 18, 31, 121, 143
LweI	GCATC	3 cut(s)	66, 79, 126
MboII	GAAGA	2 cut(s)	34, 216
MnlI	CCTC	9 cut(s)	42, 45, 57, 155, 182, 199, 202, 205, 241
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	1 cut(s)	108
Mva1269I	GAATGC	1 cut(s)	131
MwoI	GCNNNNNNNGC	2 cut(s)	76, 128
NciI	CCSGG	1 cut(s)	108
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PctI	GAATGC	1 cut(s)	131
PspFI	CCCAGC	1 cut(s)	22
ScrFI	CCNGG	1 cut(s)	108
SetI	ASST	4 cut(s)	93, 147, 162, 233
SfaNI	GCATC	3 cut(s)	66, 79, 126
SsiI	CCGC	3 cut(s)	94, 169, 234
StyD4I	CCNGG	1 cut(s)	106
StyI	CCWWGG	1 cut(s)	112
TspGWI	ACGGA	1 cut(s)	208
XmiI	GTMKAC	2 cut(s)	141, 162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.