Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013994

Physical Location & Seq

Genomic Coordinates Reverse (-)

854077 .. 856725

Gene Structure 2649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G02950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGTGACACTAACACCATCTTCTGCTAGTACCCCAAAAACATCTTTTGATTTCATGAAGAATAACAACAGTCACAGCAGTCTCTATGTTTCTTCTTCTTCTTACTTGAGCAGCAAGGAAGATGCTCTTGTCACGACCAAGAAGCTCATGGAACCAAGCAAAACACTAAACATGAGCATTAATCCAAAACAAGAGGAGTTTGGTGATGAGAAGAAAATGGTGAAGAAAGCTCCTGAAGATCCAGAGATTGGTGTGTTTGGAGCTGAGAAGTACTTCAATGGAGACATGGATTCAGACCAAGGTTCTAGTGTTCTGTCTCTGACAAACCCAGAAGTTGAGAGAACCGTCGTCGACTCGAAGCAGAGCGCGAAGAAATCTACTGGTACTCCGAGTGTCCGGTCTGAATCAAGCTGGAATAGTCAGAGCGTGTTGCTTCAGAACAAACTGGTGAATAGCTGCAACAGTTCCTTCAAGGAAAAGAAGAACAGTAATGGTCAGATTCAAAAGGTGACCAATAATAAGAAGAGTTTTCTCGCAAATTTGGGGTGTAAATGCGCATGCTCTGATGGGGATTCTGTAGATGTCGAGGAGAAAACCTCGGTCAAGAGAAGCGCTGATCCGAATATCTCTGTTATCACAATGAGATCTTCTGCGGATATGAACACAGAACTGATCAAGATTCAGAAGCAAGAGGAGTTATCACAGAGGAAGTCTCTTGAAGTTTTTGGATCTCCAGTGGCTATTGAGAAGAAGAGTAGTGTTGTTCAGAAGAAACTACCATTGCCTCCATGGAAATCGAGAACAGAGGAGGACGACACAAAGAGTGAAGGGAGTGATTCAAGCTCGGATCTTTTCGAGATAGAGGGTCTTACAGGGAACCCTAAACCTTTTCTTACGAGGCAAGGAAGTGATCCAGCTTCACCTACGTGTTATGCGCCAAGTGAAGTAAGCGTAGAGTGGAGCATAGTGACAGCAAGTGCAGCAGATTTCTCTGTTATGTCAGAATGTGCAACAAGTCCTGTAAGAAGAAACCGACCTACTCAGATTCCTCGAATCCCTATTACCGCTAAATCAGCACCGCAGAGACGGAAATCGAGTAGCAGCAGCGGAGGGAATGGTTTCTTGATGAGCTGCAAGAGTCATAAATCTGTTATGGTTTCTGGTGATTTAGACAGAAGAAGCAGCATGAACAAGACACAACCGAGTTACGTTCCTAGATTCCCAATGGAGACTACTAAACCTAAGAGTTTCGAAACACGAAGAAGGATCAGCAACAGCTCGATTTCTCACACACAATCATCTCTTCTTTATAGTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009638 GO:0009639 GO:0009958 GO:0009987 GO:0010017 GO:0010114 GO:0010218 GO:0016020 GO:0023052 GO:0032501 GO:0032502 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051606 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071944 GO:0099402 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

439

Amino Acids

48.08

Weight (kDa)

9.15

Isoelectric Point (pI)

65.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14280 AT2G02950
fragaria_vesca	FvH4_4g31450
malus_domestica	MD16G1073600.v1.1
prunus_persica	Prupe.1G273300_v2.0.a1
pyrus_communis	pycom13g06530
rosa_chinensis	RchiOBHm_Chr4g0439931
rosa_laevigata	RLG00000006224
rosa_multiflora	Rmu_sc0006000.1_g000001 Rmu_sc0022459.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380880
rosa_rugosa	Rorug04G0322600
rosa_samantha	Rh4AG373500 Rh4BG385800 Rh4CG400300 Rh4DG380100
rosa_wichuraiana	Rw4G031940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	556
AccB7I	CCANNNNNTGG	1 cut(s)	248
AccI	GTMKAC	1 cut(s)	351
AccII	CGCG	1 cut(s)	368
AciI	CCGC	4 cut(s)	653, 1065, 1079, 1107
AclWI	GGATC	6 cut(s)	233, 611, 736, 855, 905, 1274
AcsI	RAATTY	1 cut(s)	538
AcuI	CTGAAG	2 cut(s)	255, 419
AfaI	GTAC	3 cut(s)	31, 272, 385
AfeI	AGCGCT	1 cut(s)	613
AfiI	CCNNNNNNNGG	1 cut(s)	248
AflIII	ACRYGT	1 cut(s)	926
AgsI	TTSAA	5 cut(s)	277, 472, 503, 719, 840
AleI	CACNNNNGTG	1 cut(s)	925
AluBI	AGCT	9 cut(s)	145, 230, 263, 411, 456, 843, 917, 1131, 1278
AluI	AGCT	9 cut(s)	145, 230, 263, 411, 456, 843, 917, 1131, 1278
Alw26I	GTCTC	6 cut(s)	86, 276, 321, 717, 1078, 1223
AlwI	GGATC	6 cut(s)	233, 611, 736, 855, 905, 1274
Aor51HI	AGCGCT	1 cut(s)	613
ApeKI	GCWGC	7 cut(s)	111, 456, 980, 1101, 1104, 1131, 1182
ApoI	RAATTY	1 cut(s)	538
AseI	ATTAAT	1 cut(s)	180
Asp700I	GAANNNNTTC	2 cut(s)	272, 1118
AspLEI	GCGC	4 cut(s)	368, 557, 614, 937
AsuHPI	GGTGA	7 cut(s)	16, 215, 232, 460, 520, 912, 1175
AsuII	TTCGAA	1 cut(s)	1251
BbvI	GCAGC	7 cut(s)	123, 443, 992, 1113, 1116, 1118, 1194
BccI	CCATC	2 cut(s)	25, 560
BclI	TGATCA	1 cut(s)	672
BcoDI	GTCTC	6 cut(s)	86, 276, 321, 717, 1078, 1223
BfaI	CTAG	3 cut(s)	27, 306, 1215
BfmI	CTRYAG	1 cut(s)	576
BfoI	RGCGCY	1 cut(s)	615
BglII	AGATCT	1 cut(s)	644
BisI	GCNGC	7 cut(s)	112, 457, 981, 1102, 1105, 1132, 1183
BlsI	GCNGC	7 cut(s)	113, 458, 982, 1103, 1106, 1133, 1184
BmcAI	AGTACT	1 cut(s)	272
BmiI	GGNNCC	2 cut(s)	153, 878
BmsI	GCATC	1 cut(s)	112
BplI	GAGNNNNNCTC	4 cut(s)	581, 613, 697, 729
BpmI	CTGGAG	1 cut(s)	717
Bpu14I	TTCGAA	1 cut(s)	1251
BpuEI	CTTGAG	1 cut(s)	127
BsaAI	YACGTR	1 cut(s)	927
BsaJI	CCNNGG	3 cut(s)	298, 597, 788
BsaWI	WCCGGW	1 cut(s)	396
BsaXI	ACNNNNNCTCC	2 cut(s)	370, 400
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse1I	ACTGG	3 cut(s)	385, 450, 734
Bse3DI	GCAATG	1 cut(s)	779
BseDI	CCNNGG	3 cut(s)	298, 597, 788
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMI	GCAATG	1 cut(s)	779
BseMII	CTCAG	2 cut(s)	255, 1055
BseNI	ACTGG	3 cut(s)	385, 450, 734
BseRI	GAGGAG	4 cut(s)	209, 602, 707, 821
BseXI	GCAGC	7 cut(s)	123, 443, 992, 1113, 1116, 1118, 1194
BsgI	GTGCAG	1 cut(s)	999
Bsh1236I	CGCG	1 cut(s)	368
BsiSI	CCGG	1 cut(s)	397
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmAI	GTCTC	6 cut(s)	86, 276, 321, 717, 1078, 1223
BsmBI	CGTCTC	1 cut(s)	1078
Bsp119I	TTCGAA	1 cut(s)	1251
Bsp143I	GATC	8 cut(s)	238, 616, 644, 672, 728, 847, 910, 1266
Bsp19I	CCATGG	1 cut(s)	788
BspACI	CCGC	4 cut(s)	653, 1065, 1079, 1107
BspCNI	CTCAG	2 cut(s)	256, 1054
BspFNI	CGCG	1 cut(s)	368
BspHI	TCATGA	1 cut(s)	54
BspLI	GGNNCC	2 cut(s)	153, 878
BspPI	GGATC	6 cut(s)	233, 611, 736, 855, 905, 1274
BspT104I	TTCGAA	1 cut(s)	1251
BsrDI	GCAATG	1 cut(s)	779
BsrI	ACTGG	3 cut(s)	385, 450, 734
BssECI	CCNNGG	3 cut(s)	298, 597, 788
BssMI	GATC	8 cut(s)	238, 616, 644, 672, 728, 847, 910, 1266
BssT1I	CCWWGG	2 cut(s)	298, 788
Bst4CI	ACNGT	4 cut(s)	71, 346, 464, 488
Bst6I	CTCTTC	3 cut(s)	518, 746, 1308
BstBAI	YACGTR	1 cut(s)	927
BstBI	TTCGAA	1 cut(s)	1251
BstC8I	GCNNGC	1 cut(s)	559
BstDEI	CTNAG	3 cut(s)	264, 1041, 1242
BstDSI	CCRYGG	1 cut(s)	788
BstEII	GGTNACC	1 cut(s)	508
BstFNI	CGCG	1 cut(s)	368
BstH2I	RGCGCY	1 cut(s)	615
BstHHI	GCGC	4 cut(s)	368, 557, 614, 937
BstKTI	GATC	8 cut(s)	241, 619, 647, 675, 731, 850, 913, 1269
BstMAI	GTCTC	6 cut(s)	86, 276, 321, 717, 1078, 1223
BstMBI	GATC	8 cut(s)	238, 616, 644, 672, 728, 847, 910, 1266
BstMWI	GCNNNNNNNGC	2 cut(s)	980, 1073
BstNSI	RCATGY	1 cut(s)	561
BstPI	GGTNACC	1 cut(s)	508
BstSFI	CTRYAG	1 cut(s)	576
BstUI	CGCG	1 cut(s)	368
BstV1I	GCAGC	7 cut(s)	123, 443, 992, 1113, 1116, 1118, 1194
BstX2I	RGATCY	4 cut(s)	238, 644, 728, 847
BstYI	RGATCY	4 cut(s)	238, 644, 728, 847
BtgI	CCRYGG	1 cut(s)	788
BtsIMutI	CAGTG	1 cut(s)	741
Cac8I	GCNNGC	1 cut(s)	559
CciI	TCATGA	1 cut(s)	54
CfoI	GCGC	4 cut(s)	368, 557, 614, 937
Csp6I	GTAC	3 cut(s)	30, 271, 384
CviAII	CATG	7 cut(s)	55, 148, 172, 286, 558, 789, 1186
CviQI	GTAC	3 cut(s)	30, 271, 384
DdeI	CTNAG	3 cut(s)	264, 1041, 1242
DpnI	GATC	8 cut(s)	240, 618, 646, 674, 730, 849, 912, 1268
DpnII	GATC	8 cut(s)	238, 616, 644, 672, 728, 847, 910, 1266
Eam1104I	CTCTTC	3 cut(s)	518, 746, 1308
EarI	CTCTTC	3 cut(s)	518, 746, 1308
Eco130I	CCWWGG	2 cut(s)	298, 788
Eco47III	AGCGCT	1 cut(s)	613
Eco57I	CTGAAG	2 cut(s)	255, 419
Eco91I	GGTNACC	1 cut(s)	508
EcoO65I	GGTNACC	1 cut(s)	508
EcoT14I	CCWWGG	2 cut(s)	298, 788
ErhI	CCWWGG	2 cut(s)	298, 788
Esp3I	CGTCTC	1 cut(s)	1078
FaeI	CATG	7 cut(s)	58, 151, 175, 289, 561, 792, 1189
FalI	AAGNNNNNCTT	2 cut(s)	111, 143
FatI	CATG	7 cut(s)	54, 147, 171, 285, 557, 788, 1185
FbaI	TGATCA	1 cut(s)	672
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	7 cut(s)	112, 457, 981, 1102, 1105, 1132, 1183
Fsp4HI	GCNGC	7 cut(s)	112, 457, 981, 1102, 1105, 1132, 1183
FspAI	RTGCGCAY	1 cut(s)	556
FspBI	CTAG	3 cut(s)	27, 306, 1215
FspI	TGCGCA	1 cut(s)	556
GlaI	GCGC	4 cut(s)	367, 556, 613, 936
GluI	GCNGC	7 cut(s)	112, 457, 981, 1102, 1105, 1132, 1183
GsuI	CTGGAG	1 cut(s)	717
HaeII	RGCGCY	1 cut(s)	615
HapII	CCGG	1 cut(s)	397
HhaI	GCGC	4 cut(s)	368, 557, 614, 937
Hin1II	CATG	7 cut(s)	58, 151, 175, 289, 561, 792, 1189
Hin6I	GCGC	4 cut(s)	366, 555, 612, 935
HinP1I	GCGC	4 cut(s)	366, 555, 612, 935
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HpaII	CCGG	1 cut(s)	397
HphI	GGTGA	7 cut(s)	16, 215, 232, 460, 520, 912, 1175
Hpy166II	GTNNAC	1 cut(s)	352
Hpy8I	GTNNAC	1 cut(s)	352
Hpy99I	CGWCG	2 cut(s)	350, 353
HpyAV	CCTTC	3 cut(s)	478, 821, 1257
HpyCH4III	ACNGT	4 cut(s)	71, 346, 464, 488
HpyCH4IV	ACGT	2 cut(s)	926, 1209
HpyCH4V	TGCA	4 cut(s)	459, 980, 1010, 1134
HpyF10VI	GCNNNNNNNGC	2 cut(s)	980, 1073
HpyF3I	CTNAG	3 cut(s)	264, 1041, 1242
HpySE526I	ACGT	2 cut(s)	926, 1209
Hsp92II	CATG	7 cut(s)	58, 151, 175, 289, 561, 792, 1189
HspAI	GCGC	4 cut(s)	366, 555, 612, 935
Ksp22I	TGATCA	1 cut(s)	672
Kzo9I	GATC	8 cut(s)	238, 616, 644, 672, 728, 847, 910, 1266
LmnI	GCTCC	3 cut(s)	235, 260, 960
Lsp1109I	GCAGC	7 cut(s)	123, 443, 992, 1113, 1116, 1118, 1194
LweI	GCATC	1 cut(s)	112
MaeI	CTAG	3 cut(s)	27, 306, 1215
MaeII	ACGT	2 cut(s)	926, 1209
MaeIII	GTNAC	6 cut(s)	4, 71, 130, 508, 967, 1205
MalI	GATC	8 cut(s)	240, 618, 646, 674, 730, 849, 912, 1268
MboI	GATC	8 cut(s)	238, 616, 644, 672, 728, 847, 910, 1266
MflI	RGATCY	4 cut(s)	238, 644, 728, 847
MluCI	AATT	1 cut(s)	538
MlyI	GAGTC	2 cut(s)	347, 1147
MroXI	GAANNNNTTC	2 cut(s)	272, 1118
MseI	TTAA	1 cut(s)	180
MslI	CAYNNNNRTG	1 cut(s)	925
MspA1I	CMGCKG	1 cut(s)	1107
MspI	CCGG	1 cut(s)	397
MvnI	CGCG	1 cut(s)	368
MwoI	GCNNNNNNNGC	2 cut(s)	980, 1073
NcoI	CCATGG	1 cut(s)	788
NdeII	GATC	8 cut(s)	238, 616, 644, 672, 728, 847, 910, 1266
NlaIII	CATG	7 cut(s)	58, 151, 175, 289, 561, 792, 1189
NlaIV	GGNNCC	2 cut(s)	153, 878
NmuCI	GTSAC	5 cut(s)	4, 71, 130, 508, 967
NsbI	TGCGCA	1 cut(s)	556
NspI	RCATGY	1 cut(s)	561
NspV	TTCGAA	1 cut(s)	1251
OliI	CACNNNNGTG	1 cut(s)	925
PaeI	GCATGC	1 cut(s)	561
PagI	TCATGA	1 cut(s)	54
PdmI	GAANNNNTTC	2 cut(s)	272, 1118
PfeI	GAWTC	9 cut(s)	290, 404, 499, 572, 679, 836, 1045, 1053, 1218
PflMI	CCANNNNNTGG	1 cut(s)	248
PkrI	GCNGC	7 cut(s)	113, 458, 982, 1103, 1106, 1133, 1184
PleI	GAGTC	2 cut(s)	347, 1146
PpsI	GAGTC	2 cut(s)	347, 1146
Ppu21I	YACGTR	1 cut(s)	927
PshBI	ATTAAT	1 cut(s)	180
PspEI	GGTNACC	1 cut(s)	508
PspN4I	GGNNCC	2 cut(s)	153, 878
PsuI	RGATCY	4 cut(s)	238, 644, 728, 847
RsaI	GTAC	3 cut(s)	31, 272, 385
RsaNI	GTAC	3 cut(s)	30, 271, 384
RseI	CAYNNNNRTG	1 cut(s)	925
SalI	GTCGAC	1 cut(s)	350
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	7 cut(s)	112, 457, 981, 1102, 1105, 1132, 1183
Sau3AI	GATC	8 cut(s)	238, 616, 644, 672, 728, 847, 910, 1266
ScaI	AGTACT	1 cut(s)	272
SchI	GAGTC	2 cut(s)	347, 1147
SfaNI	GCATC	1 cut(s)	112
SfcI	CTRYAG	1 cut(s)	576
SfuI	TTCGAA	1 cut(s)	1251
SmiMI	CAYNNNNRTG	1 cut(s)	925
SmlI	CTYRAG	1 cut(s)	106
SmoI	CTYRAG	1 cut(s)	106
SphI	GCATGC	1 cut(s)	561
Sse9I	AATT	1 cut(s)	538
SsiI	CCGC	4 cut(s)	653, 1065, 1079, 1107
SspMI	CTAG	3 cut(s)	27, 306, 1215
StyI	CCWWGG	2 cut(s)	298, 788
TaaI	ACNGT	4 cut(s)	71, 346, 464, 488
TaiI	ACGT	2 cut(s)	929, 1212
TaqI	TCGA	9 cut(s)	351, 356, 585, 797, 855, 1051, 1094, 1251, 1280
TaqII	GACCGA	1 cut(s)	589
TasI	AATT	1 cut(s)	538
TatI	WGTACW	1 cut(s)	270
TfiI	GAWTC	9 cut(s)	290, 404, 499, 572, 679, 836, 1045, 1053, 1218
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	1 cut(s)	741
TseFI	GTSAC	5 cut(s)	4, 71, 130, 508, 967
TseI	GCWGC	7 cut(s)	111, 456, 980, 1101, 1104, 1131, 1182
Tsp45I	GTSAC	5 cut(s)	4, 71, 130, 508, 967
TspDTI	ATGAA	4 cut(s)	43, 71, 674, 1202
TspGWI	ACGGA	1 cut(s)	1102
TspRI	CASTG	1 cut(s)	741
Van91I	CCANNNNNTGG	1 cut(s)	248
VspI	ATTAAT	1 cut(s)	180
XapI	RAATTY	1 cut(s)	538
XceI	RCATGY	1 cut(s)	561
XcmI	CCANNNNNNNNNTGG	2 cut(s)	145, 786
XmiI	GTMKAC	1 cut(s)	351
XmnI	GAANNNNTTC	2 cut(s)	272, 1118
XspI	CTAG	3 cut(s)	27, 306, 1215
ZrmI	AGTACT	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.