RLG00000006224

phytochrome kinase substrate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0013994
Physical Location & Seq
Reverse (-)
5358365 .. 5359867
1503 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006224

Sequence Viewer

Length: 1503 bp
ATGGCTATGGTTACCTCTAATATCCGAGACGCCTCCTTTTCTTCATACTTGAGTACTAATGAGGAAACTTTTCTATGTAAACTCGTTGATCAGAAGTCAAGCCGAAACCTCAGTCCGGTCATCACAACCACCAGTCCTTCCAAGGGAGATCAGCATAAGCACTTGGGAACTGGAAAGAAGGAAGAAGAGGAAGAAATTGGAGTATTTGGAGCTGAAAAATACTTCAATGGAGTAATGGACGAGGACAGCTCAAAAAGTTCAAGCAGCACCTGTAGTTCAAGGAAGTTCCATGTTCATCAGCAGCGAGTCAATCTAGATCACATGAAGCTAAAGGTACAACAGTCCGGGACTCCAAGTGTTCGTTCCGAAGCAAGTTGGAACAGCCAGAGTGCACTGCTTACAAGTGGTTCGAGAAATCCCAAAAGGACTAACAAGACAAGCAGCAACAAGGCACAGAGGAAAAGCTTCTTTGCAACTCTTGGTTGCTCATGTACTGATAAGAATTCTGTTGATGTTAATGAAGACCATGTTGGTGAAATCAGCTTCAAGCAGAATGGTGCTGCTGCCAACGCTGGAATCACAACACCCCACATTCAACAAAGTCTAGACCTTGTTGGTGAAGCTCTAGTCAAGATTAAACAAACCCCGGATTCATGGGTGAAGGAGGAGATATTGACGAACAACGAAAAGATGGATAAGTTGGGAACTGGATTGAGCAGAGAAAACTGCTTTACTTTCCCAGCTTCAAAATCCGGGGCGGTGAGTAACTTGCCTATCAAGATTCCTACCTTTCAAGAAATAGAAGATGAGAAACTGAGGAAGTCCATAGAGGTGTTTGGTTCTCCCGTGTTAGAAAAAAGGAAAAAGGCTTTAGGCCTTGAGAAAAGGCTAACAATGCTGTCTTGGGATGCCGAGTTTCCTGCAGCAAAATCTGGTGGAACCTACACTCATGAGTCAGACAGTGATGCAAGTTCAGACCTGTTTGAGATTGAGAGCCTCACAGGCAAGAACAACCCTTTTCTTGCAAGGCAAGCATCAGATGGTTGTGCCACCCCTACAACATGTTACGCGCCTAGTGAGGCAAGCATAGAGTGGAGTGTGGTCACTGCCAGTGCTGCAGATTTCAGCTCTGCCATGTCAGATTGTGAAGACCTTGTCAGGCCAAGTACAACCACCACCATAAGTGCCAAAGCAGCTAGTATGAACAAAGAGATGGTCCCAATTAGGCACCGTCCAACTGTTCTGTTAGGTTGCAAGAGTCAAAAAGCTGTGAGAGTGGCGGCTAATGCGCACAGACCATACAACCAGAAGACCATTATTGACCCACAGATGATGCCTCGCAAGCCGGAAATGCCATTCATGCCATCAACAAGGTTTCAAGGTGAGACAACCTCTAAGTTGACAGGTTTTGACTCCAGAGTACAAGGGCAACATGCACTTGCACCACGGTCGCTCCCTCGTGCACATTCACCACATGCTTCTCATCTTCTATTCATGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

501

Amino Acids

54.75

Weight (kDa)

8.69

Isoelectric Point (pI)

53.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013994)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14280 AT2G02950
fragaria_vesca FvH4_4g31450
malus_domestica MD16G1073600.v1.1
prunus_persica Prupe.1G273300_v2.0.a1
pyrus_communis pycom13g06530
rosa_chinensis RchiOBHm_Chr4g0439931
rosa_laevigata RLG00000006224
rosa_multiflora Rmu_sc0006000.1_g000001 Rmu_sc0022459.1_g000001
rosa_roxburghii Rroxscaffold_5G00380880
rosa_rugosa Rorug04G0322600
rosa_samantha Rh4AG373500 Rh4BG385800 Rh4CG400300 Rh4DG380100
rosa_wichuraiana Rw4G031940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1290
AccB1I GGYRCC 1 cut(s) 1227
AccII CGCG 1 cut(s) 1070
AciI CCGC 2 cut(s) 758, 1280
AcsI RAATTY 1 cut(s) 502
AcyI GRCGYC 1 cut(s) 30
AfaI GTAC 5 cut(s) 55, 336, 493, 1168, 1422
AfiI CCNNNNNNNGG 2 cut(s) 115, 143
AflIII ACRYGT 1 cut(s) 1061
AgsI TTSAA 8 cut(s) 226, 261, 279, 547, 596, 747, 794, 1379
AjuI GAANNNNNNNTTGG 4 cut(s) 346, 378, 513, 545
Alw21I GWGCWC 2 cut(s) 394, 1465
Alw26I GTCTC 2 cut(s) 21, 1379
Alw44I GTGCAC 2 cut(s) 390, 1461
AlwNI CAGNNNCTG 1 cut(s) 270
AoxI GGCC 2 cut(s) 874, 1160
ApaLI GTGCAC 2 cut(s) 390, 1461
ApeKI GCWGC 8 cut(s) 264, 301, 441, 560, 563, 923, 1115, 1193
ApoI RAATTY 1 cut(s) 502
ArsI GACNNNNNNTTYG 4 cut(s) 97, 129, 1200, 1232
Asp700I GAANNNNTTC 2 cut(s) 69, 464
AspLEI GCGC 2 cut(s) 1072, 1291
AspS9I GGNCC 1 cut(s) 1216
AsuC2I CCSGG 3 cut(s) 346, 647, 754
AsuHPI GGTGA 6 cut(s) 545, 629, 670, 772, 1394, 1461
AvaII GGWCC 1 cut(s) 1216
BaeGI GKGCMC 2 cut(s) 394, 1465
BaeI ACNNNNGTAYC 2 cut(s) 326, 359
BanI GGYRCC 1 cut(s) 1227
BauI CACGAG 1 cut(s) 1458
BbsI GAAGAC 3 cut(s) 528, 1155, 1316
Bbv12I GWGCWC 2 cut(s) 394, 1465
BbvI GCAGC 8 cut(s) 276, 313, 453, 547, 550, 935, 1102, 1205
BccI CCATC 4 cut(s) 685, 1034, 1207, 1372
BcgI CGANNNNNNTGC 4 cut(s) 902, 936, 1431, 1465
BclI TGATCA 1 cut(s) 88
BcnI CCSGG 3 cut(s) 346, 647, 754
BcoDI GTCTC 2 cut(s) 21, 1379
BfaI CTAG 5 cut(s) 314, 605, 626, 1074, 1197
BfmI CTRYAG 3 cut(s) 271, 921, 1116
BglI GCCNNNNNGGC 1 cut(s) 1002
BisI GCNGC 9 cut(s) 265, 302, 442, 561, 564, 924, 1116, 1194, 1281
BlsI GCNGC 9 cut(s) 266, 303, 443, 562, 565, 925, 1117, 1195, 1282
BmcAI AGTACT 1 cut(s) 55
Bme1390I CCNGG 3 cut(s) 346, 647, 754
Bme18I GGWCC 1 cut(s) 1216
BmgT120I GGNCC 1 cut(s) 1216
BmiI GGNNCC 3 cut(s) 940, 1218, 1229
BmrFI CCNGG 3 cut(s) 346, 647, 754
BmsI GCATC 4 cut(s) 898, 955, 1043, 1323
BpiI GAAGAC 3 cut(s) 528, 1155, 1316
BplI GAGNNNNNCTC 4 cut(s) 233, 265, 1376, 1408
BpmI CTGGAG 1 cut(s) 1399
BpuEI CTTGAG 2 cut(s) 70, 899
BpuMI CCSGG 3 cut(s) 346, 647, 754
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 4 cut(s) 141, 645, 753, 1445
BsaWI WCCGGW 1 cut(s) 115
BsaXI ACNNNNNCTCC 2 cut(s) 1437, 1467
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 143
Bse1I ACTGG 4 cut(s) 132, 175, 712, 1110
BseDI CCNNGG 4 cut(s) 141, 645, 753, 1445
BseGI GGATG 1 cut(s) 913
BseLI CCNNNNNNNGG 2 cut(s) 115, 143
BseMII CTCAG 2 cut(s) 124, 806
BseNI ACTGG 4 cut(s) 132, 175, 712, 1110
BseRI GAGGAG 1 cut(s) 680
BseSI GKGCMC 2 cut(s) 394, 1465
BseXI GCAGC 8 cut(s) 276, 313, 453, 547, 550, 935, 1102, 1205
BseYI CCCAGC 1 cut(s) 739
Bsh1236I CGCG 1 cut(s) 1070
Bsh1285I CGRYCG 1 cut(s) 1451
BshFI GGCC 2 cut(s) 876, 1162
BshNI GGYRCC 1 cut(s) 1227
BsiEI CGRYCG 1 cut(s) 1451
BsiHKAI GWGCWC 2 cut(s) 394, 1465
BsiSI CCGG 5 cut(s) 116, 345, 647, 753, 1346
BslFI GGGAC 2 cut(s) 361, 1202
BslI CCNNNNNNNGG 2 cut(s) 115, 143
BsmAI GTCTC 2 cut(s) 21, 1379
BsmBI CGTCTC 1 cut(s) 21
BsmFI GGGAC 2 cut(s) 361, 1202
BsnI GGCC 2 cut(s) 876, 1162
Bsp1286I GDGCHC 2 cut(s) 394, 1465
Bsp143I GATC 3 cut(s) 88, 148, 316
BspACI CCGC 2 cut(s) 758, 1280
BspANI GGCC 2 cut(s) 876, 1162
BspCNI CTCAG 2 cut(s) 123, 807
BspFNI CGCG 1 cut(s) 1070
BspHI TCATGA 1 cut(s) 949
BspLI GGNNCC 3 cut(s) 940, 1218, 1229
BspMAI CTGCAG 2 cut(s) 925, 1120
BspT107I GGYRCC 1 cut(s) 1227
BsrI ACTGG 4 cut(s) 132, 175, 712, 1110
BssECI CCNNGG 4 cut(s) 141, 645, 753, 1445
BssMI GATC 3 cut(s) 88, 148, 316
BssNI GRCGYC 1 cut(s) 30
BssSI CACGAG 1 cut(s) 1458
BssT1I CCWWGG 1 cut(s) 141
Bst2BI CACGAG 1 cut(s) 1458
Bst4CI ACNGT 5 cut(s) 342, 962, 1232, 1240, 1449
Bst6I CTCTTC 1 cut(s) 180
BstACI GRCGYC 1 cut(s) 30
BstC8I GCNNGC 3 cut(s) 1032, 1084, 1343
BstDEI CTNAG 3 cut(s) 110, 815, 1395
BstDSI CCRYGG 1 cut(s) 1445
BstEII GGTNACC 1 cut(s) 10
BstF5I GGATG 1 cut(s) 913
BstFNI CGCG 1 cut(s) 1070
BstHHI GCGC 2 cut(s) 1072, 1291
BstKTI GATC 3 cut(s) 91, 151, 319
BstMAI GTCTC 2 cut(s) 21, 1379
BstMBI GATC 3 cut(s) 88, 148, 316
BstMCI CGRYCG 1 cut(s) 1451
BstNSI RCATGY 3 cut(s) 1065, 1436, 1478
BstPI GGTNACC 1 cut(s) 10
BstSCI CCNGG 3 cut(s) 344, 645, 752
BstSFI CTRYAG 3 cut(s) 271, 921, 1116
BstSLI GKGCMC 2 cut(s) 394, 1465
BstUI CGCG 1 cut(s) 1070
BstV1I GCAGC 8 cut(s) 276, 313, 453, 547, 550, 935, 1102, 1205
BstV2I GAAGAC 3 cut(s) 528, 1155, 1316
BsuRI GGCC 2 cut(s) 876, 1162
BtgI CCRYGG 1 cut(s) 1445
BtsCI GGATG 1 cut(s) 913
BtsI GCAGTG 2 cut(s) 392, 1104
BtsIMutI CAGTG 4 cut(s) 392, 967, 1104, 1117
Cac8I GCNNGC 3 cut(s) 1032, 1084, 1343
CaiI CAGNNNCTG 1 cut(s) 270
CciI TCATGA 1 cut(s) 949
CfoI GCGC 2 cut(s) 1072, 1291
Cfr13I GGNCC 1 cut(s) 1216
CseI GACGC 1 cut(s) 38
Csp6I GTAC 5 cut(s) 54, 335, 492, 1167, 1421
CviQI GTAC 5 cut(s) 54, 335, 492, 1167, 1421
DdeI CTNAG 3 cut(s) 110, 815, 1395
DpnI GATC 3 cut(s) 90, 150, 318
DpnII GATC 3 cut(s) 88, 148, 316
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Eco130I CCWWGG 1 cut(s) 141
Eco147I AGGCCT 1 cut(s) 876
Eco47I GGWCC 1 cut(s) 1216
Eco91I GGTNACC 1 cut(s) 10
EcoO65I GGTNACC 1 cut(s) 10
EcoRI GAATTC 1 cut(s) 502
EcoT14I CCWWGG 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 141
Esp3I CGTCTC 1 cut(s) 21
FaqI GGGAC 2 cut(s) 361, 1202
FbaI TGATCA 1 cut(s) 88
Fnu4HI GCNGC 9 cut(s) 265, 302, 442, 561, 564, 924, 1116, 1194, 1281
FokI GGATG 1 cut(s) 920
Fsp4HI GCNGC 9 cut(s) 265, 302, 442, 561, 564, 924, 1116, 1194, 1281
FspAI RTGCGCAY 1 cut(s) 1290
FspBI CTAG 5 cut(s) 314, 605, 626, 1074, 1197
FspI TGCGCA 1 cut(s) 1290
GlaI GCGC 2 cut(s) 1071, 1290
GluI GCNGC 9 cut(s) 265, 302, 442, 561, 564, 924, 1116, 1194, 1281
GsaI CCCAGC 1 cut(s) 743
GsuI CTGGAG 1 cut(s) 1399
HaeIII GGCC 2 cut(s) 876, 1162
HapII CCGG 5 cut(s) 116, 345, 647, 753, 1346
HgaI GACGC 1 cut(s) 38
HhaI GCGC 2 cut(s) 1072, 1291
Hin1I GRCGYC 1 cut(s) 30
Hin6I GCGC 2 cut(s) 1070, 1289
HinP1I GCGC 2 cut(s) 1070, 1289
HincII GTYRAC 1 cut(s) 1401
HindII GTYRAC 1 cut(s) 1401
HindIII AAGCTT 1 cut(s) 463
HinfI GANTC 8 cut(s) 306, 349, 576, 650, 781, 953, 1258, 1412
HpaII CCGG 5 cut(s) 116, 345, 647, 753, 1346
HphI GGTGA 6 cut(s) 545, 629, 670, 772, 1394, 1461
Hpy166II GTNNAC 4 cut(s) 80, 392, 1401, 1463
Hpy188I TCNGA 7 cut(s) 26, 93, 367, 958, 976, 1039, 1141
Hpy188III TCNNGA 8 cut(s) 314, 411, 605, 631, 778, 794, 950, 1416
Hpy8I GTNNAC 4 cut(s) 80, 392, 1401, 1463
HpyAV CCTTC 3 cut(s) 147, 172, 655
HpyCH4III ACNGT 5 cut(s) 342, 962, 1232, 1240, 1449
HpyF3I CTNAG 3 cut(s) 110, 815, 1395
Hsp92I GRCGYC 1 cut(s) 30
HspAI GCGC 2 cut(s) 1070, 1289
Ksp22I TGATCA 1 cut(s) 88
Kzo9I GATC 3 cut(s) 88, 148, 316
LmnI GCTCC 2 cut(s) 209, 1458
Lsp1109I GCAGC 8 cut(s) 276, 313, 453, 547, 550, 935, 1102, 1205
LweI GCATC 4 cut(s) 898, 955, 1043, 1323
MaeI CTAG 5 cut(s) 314, 605, 626, 1074, 1197
MaeIII GTNAC 4 cut(s) 10, 764, 1064, 1102
MalI GATC 3 cut(s) 90, 150, 318
MboI GATC 3 cut(s) 88, 148, 316
MboII GAAGA 9 cut(s) 33, 194, 197, 203, 533, 815, 1160, 1321, 1478
MhlI GDGCHC 2 cut(s) 394, 1465
MluCI AATT 3 cut(s) 195, 502, 1221
MlyI GAGTC 5 cut(s) 315, 343, 962, 1267, 1406
MmeI TCCRAC 2 cut(s) 356, 1259
MroXI GAANNNNTTC 2 cut(s) 69, 464
MseI TTAA 2 cut(s) 516, 636
MslI CAYNNNNRTG 2 cut(s) 531, 830
MspI CCGG 5 cut(s) 116, 345, 647, 753, 1346
MspR9I CCNGG 3 cut(s) 346, 647, 754
MvnI CGCG 1 cut(s) 1070
NciI CCSGG 3 cut(s) 346, 647, 754
NdeII GATC 3 cut(s) 88, 148, 316
NlaIV GGNNCC 3 cut(s) 940, 1218, 1229
NmeAIII GCCGAG 1 cut(s) 937
NmuCI GTSAC 1 cut(s) 1102
NsbI TGCGCA 1 cut(s) 1290
NspI RCATGY 3 cut(s) 1065, 1436, 1478
PagI TCATGA 1 cut(s) 949
PceI AGGCCT 1 cut(s) 876
PciI ACATGT 1 cut(s) 1061
PdmI GAANNNNTTC 2 cut(s) 69, 464
PfeI GAWTC 3 cut(s) 576, 650, 781
PflFI GACNNNGTC 1 cut(s) 1154
PfoI TCCNGGA 1 cut(s) 344
PkrI GCNGC 9 cut(s) 266, 303, 443, 562, 565, 925, 1117, 1195, 1282
PleI GAGTC 5 cut(s) 314, 343, 961, 1266, 1406
PpsI GAGTC 5 cut(s) 314, 343, 961, 1266, 1406
PscI ACATGT 1 cut(s) 1061
PspEI GGTNACC 1 cut(s) 10
PspFI CCCAGC 1 cut(s) 739
PspN4I GGNNCC 3 cut(s) 940, 1218, 1229
PspPI GGNCC 1 cut(s) 1216
PstI CTGCAG 2 cut(s) 925, 1120
PstNI CAGNNNCTG 1 cut(s) 270
PsyI GACNNNGTC 1 cut(s) 1154
RsaI GTAC 5 cut(s) 55, 336, 493, 1168, 1422
RsaNI GTAC 5 cut(s) 54, 335, 492, 1167, 1421
RseI CAYNNNNRTG 2 cut(s) 531, 830
SaqAI TTAA 2 cut(s) 516, 636
SatI GCNGC 9 cut(s) 265, 302, 442, 561, 564, 924, 1116, 1194, 1281
Sau3AI GATC 3 cut(s) 88, 148, 316
Sau96I GGNCC 1 cut(s) 1216
ScaI AGTACT 1 cut(s) 55
SchI GAGTC 5 cut(s) 315, 343, 962, 1267, 1406
ScrFI CCNGG 3 cut(s) 346, 647, 754
SduI GDGCHC 2 cut(s) 394, 1465
SfaNI GCATC 4 cut(s) 898, 955, 1043, 1323
SfcI CTRYAG 3 cut(s) 271, 921, 1116
SinI GGWCC 1 cut(s) 1216
SmiMI CAYNNNNRTG 2 cut(s) 531, 830
SmlI CTYRAG 2 cut(s) 49, 878
SmoI CTYRAG 2 cut(s) 49, 878
Sse9I AATT 3 cut(s) 195, 502, 1221
SseBI AGGCCT 1 cut(s) 876
SsiI CCGC 2 cut(s) 758, 1280
SspMI CTAG 5 cut(s) 314, 605, 626, 1074, 1197
StuI AGGCCT 1 cut(s) 876
StyD4I CCNGG 3 cut(s) 344, 645, 752
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 5 cut(s) 342, 962, 1232, 1240, 1449
TaqI TCGA 1 cut(s) 410
TasI AATT 3 cut(s) 195, 502, 1221
TatI WGTACW 4 cut(s) 53, 491, 1166, 1420
TauI GCSGC 1 cut(s) 1283
TfiI GAWTC 3 cut(s) 576, 650, 781
Tru1I TTAA 2 cut(s) 516, 636
Tru9I TTAA 2 cut(s) 516, 636
TscAI CASTG 4 cut(s) 399, 967, 1111, 1117
TseFI GTSAC 1 cut(s) 1102
TseI GCWGC 8 cut(s) 264, 301, 441, 560, 563, 923, 1115, 1193
Tsp45I GTSAC 1 cut(s) 1102
TspDTI ATGAA 8 cut(s) 33, 284, 338, 534, 642, 1217, 1348, 1483
TspRI CASTG 4 cut(s) 399, 967, 1111, 1117
Tth111I GACNNNGTC 1 cut(s) 1154
VneI GTGCAC 2 cut(s) 390, 1461
VpaK11BI GGWCC 1 cut(s) 1216
XapI RAATTY 1 cut(s) 502
XbaI TCTAGA 2 cut(s) 313, 604
XceI RCATGY 3 cut(s) 1065, 1436, 1478
XmnI GAANNNNTTC 2 cut(s) 69, 464
XspI CTAG 5 cut(s) 314, 605, 626, 1074, 1197
ZrmI AGTACT 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.