FvH4_4g31450

phytochrome kinase substrate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0013994
Physical Location & Seq
Forward (+)
30580108 .. 30582160
2053 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g31450.t1

Sequence Viewer

Length: 1515 bp
ATGGCTGTTGTTACATCTAACATCCGAGACGCCTCCTTTTCTTCATACTTGAGTATTAACGAGCAAACCATTCTACGTAAACTTGGTGATCAGAAGTCAAGCCAAAACCTCAGTCCAATCATCACAACCACCAGTCCTTCCAAGCGAGATGATCAGCTTAAGCACTTGGGAACTAGAAAGAAGGAAGAAGAGGAAGAAATTGGAGTATTTGGAGCTGAAAAATACTTCAAAGGAGTAATGGACGAGGACAGCTCAAAAAGTTCAAGCAGCACATGTAGCTCAATGAAGTTCCATGGTCATCAGCAGCAGCGAGTCAATCTAGATCACATGAAGCTAAAGGTGCAACAGCATGGAACTCCAAGTGTTCGTTCCGAAGCAAGTAGTTGGAACAGCCAGAGTGCACTGCTGACAAGTGGGTCGAGAAAAGGCACAAGGACTAACAAGACAAGCAGCAACAAGGCACAGAGGAAGAGCTTCTTTGCAGCTCTTGGTTGTTCATGTACTGATAAGAATTCTGTTGATATTAATGAAGAGCGTGTTGGTGAAATCAGCTTCAAGCAGAATGGTGCCAACTGTGGAATCACAGCTACACCACCACACATTAAACAAAGTCTTGACCTTGTTAGTGAAGCTCTGGTCAAAATTAAACAACAAACCCCGGATTCATGGGTGAAGGAGGAGATATTGATGAACAACGAAAAGATCGAGAAGTTGGGAACTGGTCTGAGCACAGAAAACTGCTTTACTTTCCCAGCTGCAAAATCTGGAGCGGTGAGTAACTTGCCTATCAAGATTCCTGCCTTTCAAGAAATGGAAGATGAGAAAATGAGGAAGTCTATAGAGGTGTTTGGCTCTCCTGTGTTGGAGAAGAGGAAAAAGGCTCTAGGCCTTGAGAAAAGGCTAACAATGCTTTCTTGGGATGCCGAGTTTGCTGCAGCGAAATCAGGTGGAACCTACACTCATGAGTCAGACAGTGATGCAAGTTCAGACCTGTTTGAGATTGAGAGCCTCACAGGGAAAAACAACCCTTTTCTTGCAAGGCAAGCATCAGATGGTTGTGCCACCCCCACACATTGTTACGCGCCGAGTGAGGCAAGCATAGAGTGGAGTGTGGCCACTGCCAGTGCTGCAGATTTCAGCTCTGCCATGTCAGATTGTGAAGACCTTGTCAGGCCAAGTCCAACCAACACCACAAATGCCAAAGCAGCTAGAATGAACAAAGAGATGGTGCCAATTAGGCACCGTTCCAATGTTCTGTTAGGCTGCAAGAGTCACAAAGCTGTGAGAGTGGCAGCAAATGCGCACAGACCACAGAACCAGAAGAACATTATTGACCCACAGATGATGCCTCGCAAGCCAGAAATGCCACTCATGCCATCAACAAGGTTTCAAGCTGACCCAAACTCTAAGTTGACAGGTTTTGACTCGAGAGTACAAGGGCAGCATGCGCTTGCACCACGGTCGCTTCCGCGTGCACATTCACCACATGCTTCTCATCTTCTATTCATGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

505

Amino Acids

55.38

Weight (kDa)

9.03

Isoelectric Point (pI)

54.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013994)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14280 AT2G02950
fragaria_vesca FvH4_4g31450
malus_domestica MD16G1073600.v1.1
prunus_persica Prupe.1G273300_v2.0.a1
pyrus_communis pycom13g06530
rosa_chinensis RchiOBHm_Chr4g0439931
rosa_laevigata RLG00000006224
rosa_multiflora Rmu_sc0006000.1_g000001 Rmu_sc0022459.1_g000001
rosa_roxburghii Rroxscaffold_5G00380880
rosa_rugosa Rorug04G0322600
rosa_samantha Rh4AG373500 Rh4BG385800 Rh4CG400300 Rh4DG380100
rosa_wichuraiana Rw4G031940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 415
Acc16I TGCGCA 1 cut(s) 1302
AccB1I GGYRCC 3 cut(s) 566, 1228, 1239
AccBSI CCGCTC 1 cut(s) 770
AccII CGCG 2 cut(s) 1082, 1471
AciI CCGC 2 cut(s) 770, 1469
AcoI YGGCCR 1 cut(s) 1113
AcsI RAATTY 1 cut(s) 511
AcyI GRCGYC 1 cut(s) 30
AfaI GTAC 2 cut(s) 502, 1434
AflII CTTAAG 1 cut(s) 158
AflIII ACRYGT 1 cut(s) 272
AgsI TTSAA 5 cut(s) 229, 264, 556, 806, 1391
AjuI GAANNNNNNNTTGG 4 cut(s) 352, 384, 522, 554
Alw21I GWGCWC 3 cut(s) 403, 731, 1477
Alw26I GTCTC 1 cut(s) 21
Alw44I GTGCAC 2 cut(s) 399, 1473
Ama87I CYCGRG 1 cut(s) 1426
AoxI GGCC 3 cut(s) 886, 1113, 1172
ApaLI GTGCAC 2 cut(s) 399, 1473
ApoI RAATTY 1 cut(s) 511
ArsI GACNNNNNNTTYG 2 cut(s) 97, 129
AseI ATTAAT 1 cut(s) 525
Asp700I GAANNNNTTC 1 cut(s) 473
AspLEI GCGC 3 cut(s) 1084, 1303, 1450
AsuC2I CCSGG 1 cut(s) 659
AsuHPI GGTGA 5 cut(s) 98, 554, 682, 784, 1473
AvaI CYCGRG 1 cut(s) 1426
BaeGI GKGCMC 2 cut(s) 403, 1477
BalI TGGCCA 1 cut(s) 1115
BanI GGYRCC 3 cut(s) 566, 1228, 1239
BbsI GAAGAC 1 cut(s) 1167
Bbv12I GWGCWC 3 cut(s) 403, 731, 1477
BccI CCATC 3 cut(s) 1046, 1219, 1384
BcgI CGANNNNNNTGC 4 cut(s) 914, 948, 1443, 1477
BclI TGATCA 2 cut(s) 88, 151
BcnI CCSGG 1 cut(s) 659
BcoDI GTCTC 1 cut(s) 21
BfaI CTAG 4 cut(s) 174, 320, 884, 1209
BfmI CTRYAG 3 cut(s) 837, 933, 1128
BfrI CTTAAG 1 cut(s) 158
BglI GCCNNNNNGGC 1 cut(s) 1237
Bme1390I CCNGG 1 cut(s) 659
BmeT110I CYCGRG 1 cut(s) 1426
BmiI GGNNCC 4 cut(s) 568, 952, 1230, 1241
BmrFI CCNGG 1 cut(s) 659
BmsI GCATC 4 cut(s) 910, 967, 1055, 1335
BpiI GAAGAC 1 cut(s) 1167
BplI GAGNNNNNCTC 2 cut(s) 236, 268
BpmI CTGGAG 1 cut(s) 786
BpuEI CTTGAG 2 cut(s) 70, 911
BpuMI CCSGG 1 cut(s) 659
BsaAI YACGTR 1 cut(s) 77
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 3 cut(s) 292, 657, 1457
Bse1I ACTGG 3 cut(s) 132, 724, 1122
BseDI CCNNGG 3 cut(s) 292, 657, 1457
BseGI GGATG 2 cut(s) 21, 925
BseMII CTCAG 2 cut(s) 124, 716
BseNI ACTGG 3 cut(s) 132, 724, 1122
BseRI GAGGAG 1 cut(s) 692
BseSI GKGCMC 2 cut(s) 403, 1477
BseYI CCCAGC 1 cut(s) 751
Bsh1236I CGCG 2 cut(s) 1082, 1471
Bsh1285I CGRYCG 1 cut(s) 1463
BshFI GGCC 3 cut(s) 888, 1115, 1174
BshNI GGYRCC 3 cut(s) 566, 1228, 1239
BsiEI CGRYCG 1 cut(s) 1463
BsiHKAI GWGCWC 3 cut(s) 403, 731, 1477
BsiHKCI CYCGRG 1 cut(s) 1426
BsiSI CCGG 1 cut(s) 659
BsmAI GTCTC 1 cut(s) 21
BsmBI CGTCTC 1 cut(s) 21
BsnI GGCC 3 cut(s) 888, 1115, 1174
BsoBI CYCGRG 1 cut(s) 1426
Bsp1286I GDGCHC 3 cut(s) 403, 731, 1477
Bsp143I GATC 4 cut(s) 88, 151, 322, 702
Bsp19I CCATGG 1 cut(s) 292
BspACI CCGC 2 cut(s) 770, 1469
BspANI GGCC 3 cut(s) 888, 1115, 1174
BspCNI CTCAG 2 cut(s) 123, 717
BspFNI CGCG 2 cut(s) 1082, 1471
BspHI TCATGA 1 cut(s) 961
BspLI GGNNCC 4 cut(s) 568, 952, 1230, 1241
BspMAI CTGCAG 2 cut(s) 937, 1132
BspQI GCTCTTC 2 cut(s) 464, 525
BspT107I GGYRCC 3 cut(s) 566, 1228, 1239
BspTI CTTAAG 1 cut(s) 158
BsrBI CCGCTC 1 cut(s) 770
BsrI ACTGG 3 cut(s) 132, 724, 1122
BssECI CCNNGG 3 cut(s) 292, 657, 1457
BssMI GATC 4 cut(s) 88, 151, 322, 702
BssNI GRCGYC 1 cut(s) 30
BssT1I CCWWGG 1 cut(s) 292
Bst4CI ACNGT 4 cut(s) 575, 974, 1244, 1461
Bst6I CTCTTC 4 cut(s) 183, 464, 525, 863
BstACI GRCGYC 1 cut(s) 30
BstAFI CTTAAG 1 cut(s) 158
BstAPI GCANNNNNTGC 1 cut(s) 1298
BstBAI YACGTR 1 cut(s) 77
BstC8I GCNNGC 6 cut(s) 1044, 1096, 1355, 1446, 1452, 1473
BstDEI CTNAG 3 cut(s) 110, 725, 1407
BstDSI CCRYGG 2 cut(s) 292, 1457
BstF5I GGATG 2 cut(s) 21, 925
BstFNI CGCG 2 cut(s) 1082, 1471
BstHHI GCGC 3 cut(s) 1084, 1303, 1450
BstKTI GATC 4 cut(s) 91, 154, 325, 705
BstMAI GTCTC 1 cut(s) 21
BstMBI GATC 4 cut(s) 88, 151, 322, 702
BstMCI CGRYCG 1 cut(s) 1463
BstNSI RCATGY 3 cut(s) 276, 1448, 1490
BstSCI CCNGG 1 cut(s) 657
BstSFI CTRYAG 3 cut(s) 837, 933, 1128
BstSLI GKGCMC 2 cut(s) 403, 1477
BstSNI TACGTA 1 cut(s) 77
BstUI CGCG 2 cut(s) 1082, 1471
BstV2I GAAGAC 1 cut(s) 1167
BsuRI GGCC 3 cut(s) 888, 1115, 1174
BtgI CCRYGG 2 cut(s) 292, 1457
BtsCI GGATG 2 cut(s) 21, 925
BtsI GCAGTG 2 cut(s) 401, 1116
BtsIMutI CAGTG 4 cut(s) 401, 979, 1116, 1129
Cac8I GCNNGC 6 cut(s) 1044, 1096, 1355, 1446, 1452, 1473
CciI TCATGA 1 cut(s) 961
CfoI GCGC 3 cut(s) 1084, 1303, 1450
CseI GACGC 1 cut(s) 38
Csp6I GTAC 2 cut(s) 501, 1433
CviQI GTAC 2 cut(s) 501, 1433
DdeI CTNAG 3 cut(s) 110, 725, 1407
DpnI GATC 4 cut(s) 90, 153, 324, 704
DpnII GATC 4 cut(s) 88, 151, 322, 702
DrdI GACNNNNNNGTC 1 cut(s) 415
DseDI GACNNNNNNGTC 1 cut(s) 415
EaeI YGGCCR 1 cut(s) 1113
Eam1104I CTCTTC 4 cut(s) 183, 464, 525, 863
EarI CTCTTC 4 cut(s) 183, 464, 525, 863
Eco105I TACGTA 1 cut(s) 77
Eco130I CCWWGG 1 cut(s) 292
Eco147I AGGCCT 1 cut(s) 888
Eco88I CYCGRG 1 cut(s) 1426
EcoRI GAATTC 1 cut(s) 511
EcoT14I CCWWGG 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 292
Esp3I CGTCTC 1 cut(s) 21
FalI AAGNNNNNCTT 2 cut(s) 461, 493
FbaI TGATCA 2 cut(s) 88, 151
FokI GGATG 2 cut(s) 8, 932
FspAI RTGCGCAY 1 cut(s) 1302
FspBI CTAG 4 cut(s) 174, 320, 884, 1209
FspI TGCGCA 1 cut(s) 1302
GlaI GCGC 3 cut(s) 1083, 1302, 1449
GsaI CCCAGC 1 cut(s) 755
GsuI CTGGAG 1 cut(s) 786
HaeIII GGCC 3 cut(s) 888, 1115, 1174
HapII CCGG 1 cut(s) 659
HgaI GACGC 1 cut(s) 38
HhaI GCGC 3 cut(s) 1084, 1303, 1450
Hin1I GRCGYC 1 cut(s) 30
Hin6I GCGC 3 cut(s) 1082, 1301, 1448
HinP1I GCGC 3 cut(s) 1082, 1301, 1448
HincII GTYRAC 1 cut(s) 1413
HindII GTYRAC 1 cut(s) 1413
HinfI GANTC 7 cut(s) 312, 579, 662, 793, 965, 1270, 1424
HpaII CCGG 1 cut(s) 659
HphI GGTGA 5 cut(s) 98, 554, 682, 784, 1473
Hpy166II GTNNAC 4 cut(s) 80, 401, 1413, 1475
Hpy188I TCNGA 8 cut(s) 26, 93, 373, 726, 970, 988, 1051, 1153
Hpy188III TCNNGA 9 cut(s) 320, 420, 614, 706, 765, 790, 806, 962, 1428
Hpy8I GTNNAC 4 cut(s) 80, 401, 1413, 1475
HpyAV CCTTC 3 cut(s) 147, 175, 667
HpyCH4III ACNGT 4 cut(s) 575, 974, 1244, 1461
HpyCH4IV ACGT 1 cut(s) 76
HpyF3I CTNAG 3 cut(s) 110, 725, 1407
HpySE526I ACGT 1 cut(s) 76
Hsp92I GRCGYC 1 cut(s) 30
HspAI GCGC 3 cut(s) 1082, 1301, 1448
Ksp22I TGATCA 2 cut(s) 88, 151
Kzo9I GATC 4 cut(s) 88, 151, 322, 702
LguI GCTCTTC 2 cut(s) 464, 525
LmnI GCTCC 2 cut(s) 212, 767
LweI GCATC 4 cut(s) 910, 967, 1055, 1335
MaeI CTAG 4 cut(s) 174, 320, 884, 1209
MaeII ACGT 1 cut(s) 76
MaeIII GTNAC 4 cut(s) 10, 776, 1076, 1271
MalI GATC 4 cut(s) 90, 153, 324, 704
MbiI CCGCTC 1 cut(s) 770
MboI GATC 4 cut(s) 88, 151, 322, 702
MhlI GDGCHC 3 cut(s) 403, 731, 1477
MlsI TGGCCA 1 cut(s) 1115
MluCI AATT 4 cut(s) 198, 511, 642, 1233
MluNI TGGCCA 1 cut(s) 1115
MlyI GAGTC 4 cut(s) 321, 974, 1279, 1418
MmeI TCCRAC 3 cut(s) 365, 843, 1205
Mox20I TGGCCA 1 cut(s) 1115
MroXI GAANNNNTTC 1 cut(s) 473
MscI TGGCCA 1 cut(s) 1115
MseI TTAA 5 cut(s) 57, 159, 525, 603, 645
Msp20I TGGCCA 1 cut(s) 1115
MspA1I CMGCKG 1 cut(s) 755
MspCI CTTAAG 1 cut(s) 158
MspI CCGG 1 cut(s) 659
MspR9I CCNGG 1 cut(s) 659
MvnI CGCG 2 cut(s) 1082, 1471
NciI CCSGG 1 cut(s) 659
NcoI CCATGG 1 cut(s) 292
NdeII GATC 4 cut(s) 88, 151, 322, 702
NlaIV GGNNCC 4 cut(s) 568, 952, 1230, 1241
NmeAIII GCCGAG 2 cut(s) 949, 1110
NmuCI GTSAC 1 cut(s) 1271
NsbI TGCGCA 1 cut(s) 1302
NspI RCATGY 3 cut(s) 276, 1448, 1490
PaeI GCATGC 1 cut(s) 1448
PaeR7I CTCGAG 1 cut(s) 1426
PagI TCATGA 1 cut(s) 961
PceI AGGCCT 1 cut(s) 888
PciI ACATGT 1 cut(s) 272
PciSI GCTCTTC 2 cut(s) 464, 525
PcsI WCGNNNNNNNCGW 1 cut(s) 702
PdmI GAANNNNTTC 1 cut(s) 473
PfeI GAWTC 3 cut(s) 579, 662, 793
PflFI GACNNNGTC 1 cut(s) 1166
PleI GAGTC 4 cut(s) 320, 973, 1278, 1418
PpsI GAGTC 4 cut(s) 320, 973, 1278, 1418
Ppu21I YACGTR 1 cut(s) 77
PscI ACATGT 1 cut(s) 272
PshBI ATTAAT 1 cut(s) 525
PspFI CCCAGC 1 cut(s) 751
PspN4I GGNNCC 4 cut(s) 568, 952, 1230, 1241
PstI CTGCAG 2 cut(s) 937, 1132
PsyI GACNNNGTC 1 cut(s) 1166
PvuII CAGCTG 1 cut(s) 755
RsaI GTAC 2 cut(s) 502, 1434
RsaNI GTAC 2 cut(s) 501, 1433
SapI GCTCTTC 2 cut(s) 464, 525
SaqAI TTAA 5 cut(s) 57, 159, 525, 603, 645
Sau3AI GATC 4 cut(s) 88, 151, 322, 702
SchI GAGTC 4 cut(s) 321, 974, 1279, 1418
ScrFI CCNGG 1 cut(s) 659
SduI GDGCHC 3 cut(s) 403, 731, 1477
SfaNI GCATC 4 cut(s) 910, 967, 1055, 1335
SfcI CTRYAG 3 cut(s) 837, 933, 1128
Sfr274I CTCGAG 1 cut(s) 1426
SlaI CTCGAG 1 cut(s) 1426
SmlI CTYRAG 4 cut(s) 49, 158, 890, 1426
SmoI CTYRAG 4 cut(s) 49, 158, 890, 1426
SnaBI TACGTA 1 cut(s) 77
SphI GCATGC 1 cut(s) 1448
Sse9I AATT 4 cut(s) 198, 511, 642, 1233
SseBI AGGCCT 1 cut(s) 888
SsiI CCGC 2 cut(s) 770, 1469
SspMI CTAG 4 cut(s) 174, 320, 884, 1209
StuI AGGCCT 1 cut(s) 888
StyD4I CCNGG 1 cut(s) 657
StyI CCWWGG 1 cut(s) 292
TaaI ACNGT 4 cut(s) 575, 974, 1244, 1461
TaiI ACGT 1 cut(s) 79
TaqI TCGA 3 cut(s) 419, 705, 1427
TasI AATT 4 cut(s) 198, 511, 642, 1233
TatI WGTACW 2 cut(s) 500, 1432
TfiI GAWTC 3 cut(s) 579, 662, 793
Tru1I TTAA 5 cut(s) 57, 159, 525, 603, 645
Tru9I TTAA 5 cut(s) 57, 159, 525, 603, 645
TscAI CASTG 4 cut(s) 408, 979, 1123, 1129
TseFI GTSAC 1 cut(s) 1271
Tsp45I GTSAC 1 cut(s) 1271
TspDTI ATGAA 9 cut(s) 33, 299, 344, 486, 543, 654, 704, 1229, 1495
TspRI CASTG 4 cut(s) 408, 979, 1123, 1129
Tth111I GACNNNGTC 1 cut(s) 1166
Vha464I CTTAAG 1 cut(s) 158
VneI GTGCAC 2 cut(s) 399, 1473
VspI ATTAAT 1 cut(s) 525
XapI RAATTY 1 cut(s) 511
XbaI TCTAGA 1 cut(s) 319
XceI RCATGY 3 cut(s) 276, 1448, 1490
XhoI CTCGAG 1 cut(s) 1426
XmnI GAANNNNTTC 1 cut(s) 473
XspI CTAG 4 cut(s) 174, 320, 884, 1209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.