Rroxscaffold_5G00380880

phytochrome kinase substrate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0013994
Physical Location & Seq
Forward (+)
61006761 .. 61009414
2654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00380880.1

Sequence Viewer

Length: 1551 bp
ATGAGGAAACCTTTCTATGTAAACTCGTTGATCAGAAGTCAAGCCGAAACCTCAGTCCAGTCATCACAACCACCAGTCCTTCCAAGGGGAGATCAGCATAAGCACTTGGGAACTAGGAAGAAGGAAGAAGAGGAAGAAATTGGAGTATTTGGAGCTGAAAAATACTTCAATGGAGTAATGGACGAGGACAGCTCAAAAAGTTCAAGCAGCACCTGTAGTTCGAGGAAGTTCCATGTTCATCAGCAGCGAGTGAATCTAGATCACATGAAGCTAAAGGTACAACAGCCCGGGACTCCAAGTGTTCGTTCCGAATCAAGTTGGAACAGCCAGAGTGCACTGCTTACAAGTGGTTCGAGAAATCCCAAAAGGACTAACAAGACAAGCAGCAACAAGGCACAGAGGAAAAGCTTCTTTGCAACTCTTGGTTGCTCATGTACTGATAAGCATTCTGTTGATGTTAATGAAGACCATGTTGGTGAAATCAGCTTCAAGCAGAATGGTGCTGCTGCCAACTCTGGAATCACAACACCCCACATTAGACAAAGTCTAGACCTTGTTGGTGAAGCTCTAGTCAAGATAAAACAAACCCCGGATTCATGGGTGAAGGAGGAGATATTGATGAACAACGAAAAGATGGATAAGTTGGGAACTGGATTGAGCAGAGAAAACTGCTTTACTTTCCCAGTTTCAAAATCCGGGCAGGTGAGTAACTTGCCTATCAAGATTCCTACCTTTCAAGAAATAGAAGATGAGAAACTGAGGAAGTCTATAGAGGTGTTTGGTTCTCCCGTGTTAGAAAAAAGGAAAAAGGCTTTAGGCCTTGAGAAAAGGCTAACAATGCTGTCTTGGGATGCCGAATTTCCTGCAGCAAAATCTGGTGGAACCTACACTCATGAGTCAGACAGTGATGCAAGTTCAGACCTGTTTGAGATTGAGAGCCTCACAGGCAAGAACAACCCTTTTCTTGCAAGGCAAGCATCAGATGGTTGTGCCACCCCTACAACATGTTACGCGCCTAGTGAGGCAAGCATAGAGTGGAGTGTGGTCACTGCCAGTGCTGCAGATTTCAGCTCTGCCATGTCAGATTGTGAAGACCTTGTCAGGCCAAGTCCAACCACCACCACAAGTGCCAAAGCAGCTAGTATGAACAAAGAGATGGTGCCAATTAGGCACCGTCCAACTGTTCTGTTAGGTTGCAAGAGTCAAAAAGCTGTGAAAGTGGCGGCAAATGCGCACAGACCATACAACCAGAAGACCATTAGTGACCCACAGATGATGCCTCGCAAGCCGGAAATTCCATTCATGCCATCAACAAGGTTTCAAGCTGAGACAACCTCTAAGTTGACAGGTTTTGACTCCAGAGTACAAGGGCAACATGCACTTGCACCACGGTCGCTCCCTCGTGCACATTCACCACATGCTTCTCATCTTCTGTTCATGCATGACCCAGATACAAACCCTTATATTTCAATAGCCTGGACCGACATTGTGGATGTAGAAAGGAACAAGCTGAAAGGAACTAACTCAACTAAGCAAACAATGTGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

516

Amino Acids

57.06

Weight (kDa)

8.9

Isoelectric Point (pI)

53.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013994)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14280 AT2G02950
fragaria_vesca FvH4_4g31450
malus_domestica MD16G1073600.v1.1
prunus_persica Prupe.1G273300_v2.0.a1
pyrus_communis pycom13g06530
rosa_chinensis RchiOBHm_Chr4g0439931
rosa_laevigata RLG00000006224
rosa_multiflora Rmu_sc0006000.1_g000001 Rmu_sc0022459.1_g000001
rosa_roxburghii Rroxscaffold_5G00380880
rosa_rugosa Rorug04G0322600
rosa_samantha Rh4AG373500 Rh4BG385800 Rh4CG400300 Rh4DG380100
rosa_wichuraiana Rw4G031940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 691
Acc16I TGCGCA 1 cut(s) 1233
Acc36I ACCTGC 1 cut(s) 691
AccB1I GGYRCC 2 cut(s) 1159, 1170
AccII CGCG 1 cut(s) 1013
AciI CCGC 1 cut(s) 1223
AcsI RAATTY 2 cut(s) 857, 1293
AfaI GTAC 3 cut(s) 279, 436, 1365
AfiI CCNNNNNNNGG 1 cut(s) 85
AflIII ACRYGT 1 cut(s) 1004
AgsI TTSAA 7 cut(s) 169, 204, 490, 690, 737, 1322, 1470
AjnI CCWGG 1 cut(s) 1475
AjuI GAANNNNNNNTTGG 4 cut(s) 289, 321, 456, 488
Alw21I GWGCWC 2 cut(s) 337, 1408
Alw26I GTCTC 1 cut(s) 1322
Alw44I GTGCAC 2 cut(s) 333, 1404
AlwNI CAGNNNCTG 1 cut(s) 213
Ama87I CYCGRG 1 cut(s) 287
AoxI GGCC 2 cut(s) 817, 1103
ApaLI GTGCAC 2 cut(s) 333, 1404
ApeKI GCWGC 8 cut(s) 207, 244, 384, 503, 506, 866, 1058, 1136
ApoI RAATTY 2 cut(s) 857, 1293
ArsI GACNNNNNNTTYG 2 cut(s) 39, 71
Asp700I GAANNNNTTC 2 cut(s) 11, 407
AspLEI GCGC 2 cut(s) 1015, 1234
AspS9I GGNCC 1 cut(s) 1479
AsuC2I CCSGG 4 cut(s) 288, 289, 590, 697
AsuHPI GGTGA 5 cut(s) 488, 572, 613, 715, 1404
AvaI CYCGRG 1 cut(s) 287
AvaII GGWCC 1 cut(s) 1479
BaeGI GKGCMC 2 cut(s) 337, 1408
BanI GGYRCC 2 cut(s) 1159, 1170
BauI CACGAG 1 cut(s) 1401
BbsI GAAGAC 3 cut(s) 471, 1098, 1259
Bbv12I GWGCWC 2 cut(s) 337, 1408
BbvI GCAGC 8 cut(s) 219, 256, 396, 490, 493, 878, 1045, 1148
BccI CCATC 4 cut(s) 628, 977, 1150, 1315
BcgI CGANNNNNNTGC 4 cut(s) 845, 879, 1374, 1408
BciT130I CCWGG 1 cut(s) 1477
BclI TGATCA 1 cut(s) 30
BcnI CCSGG 4 cut(s) 288, 289, 590, 697
BcoDI GTCTC 1 cut(s) 1322
BfaI CTAG 6 cut(s) 114, 257, 548, 569, 1017, 1140
BfmI CTRYAG 4 cut(s) 214, 768, 864, 1059
BfuAI ACCTGC 1 cut(s) 691
BglI GCCNNNNNGGC 2 cut(s) 945, 1168
BisI GCNGC 9 cut(s) 208, 245, 385, 504, 507, 867, 1059, 1137, 1224
BlsI GCNGC 9 cut(s) 209, 246, 386, 505, 508, 868, 1060, 1138, 1225
Bme1390I CCNGG 5 cut(s) 288, 289, 590, 697, 1477
Bme18I GGWCC 1 cut(s) 1479
BmeT110I CYCGRG 1 cut(s) 287
BmgT120I GGNCC 1 cut(s) 1479
BmiI GGNNCC 3 cut(s) 883, 1161, 1172
BmrFI CCNGG 5 cut(s) 288, 289, 590, 697, 1477
BmrI ACTGGG 1 cut(s) 677
BmsI GCATC 4 cut(s) 841, 898, 986, 1266
BmuI ACTGGG 1 cut(s) 677
BpiI GAAGAC 3 cut(s) 471, 1098, 1259
BplI GAGNNNNNCTC 4 cut(s) 176, 208, 1319, 1351
BpmI CTGGAG 1 cut(s) 1342
BpuEI CTTGAG 1 cut(s) 842
BpuMI CCSGG 4 cut(s) 288, 289, 590, 697
BsaJI CCNNGG 4 cut(s) 83, 287, 588, 1388
BsaXI ACNNNNNCTCC 2 cut(s) 1380, 1410
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse1I ACTGG 5 cut(s) 58, 74, 655, 683, 1053
BseBI CCWGG 1 cut(s) 1477
BseDI CCNNGG 4 cut(s) 83, 287, 588, 1388
BseGI GGATG 2 cut(s) 856, 1498
BseLI CCNNNNNNNGG 1 cut(s) 85
BseMII CTCAG 3 cut(s) 66, 749, 1317
BseNI ACTGG 5 cut(s) 58, 74, 655, 683, 1053
BseRI GAGGAG 1 cut(s) 623
BseSI GKGCMC 2 cut(s) 337, 1408
BseXI GCAGC 8 cut(s) 219, 256, 396, 490, 493, 878, 1045, 1148
Bsh1236I CGCG 1 cut(s) 1013
Bsh1285I CGRYCG 1 cut(s) 1394
BshFI GGCC 2 cut(s) 819, 1105
BshNI GGYRCC 2 cut(s) 1159, 1170
BsiEI CGRYCG 1 cut(s) 1394
BsiHKAI GWGCWC 2 cut(s) 337, 1408
BsiHKCI CYCGRG 1 cut(s) 287
BsiSI CCGG 4 cut(s) 288, 590, 696, 1289
BslFI GGGAC 1 cut(s) 304
BslI CCNNNNNNNGG 1 cut(s) 85
BsmAI GTCTC 1 cut(s) 1322
BsmFI GGGAC 1 cut(s) 304
BsmI GAATGC 1 cut(s) 445
BsnI GGCC 2 cut(s) 819, 1105
BsoBI CYCGRG 1 cut(s) 287
Bsp1286I GDGCHC 2 cut(s) 337, 1408
Bsp143I GATC 3 cut(s) 30, 91, 259
BspACI CCGC 1 cut(s) 1223
BspANI GGCC 2 cut(s) 819, 1105
BspCNI CTCAG 3 cut(s) 65, 750, 1318
BspFNI CGCG 1 cut(s) 1013
BspHI TCATGA 1 cut(s) 892
BspLI GGNNCC 3 cut(s) 883, 1161, 1172
BspMAI CTGCAG 2 cut(s) 868, 1063
BspMI ACCTGC 1 cut(s) 691
BspT107I GGYRCC 2 cut(s) 1159, 1170
BsrI ACTGG 5 cut(s) 58, 74, 655, 683, 1053
BssECI CCNNGG 4 cut(s) 83, 287, 588, 1388
BssMI GATC 3 cut(s) 30, 91, 259
BssSI CACGAG 1 cut(s) 1401
BssT1I CCWWGG 1 cut(s) 83
Bst2BI CACGAG 1 cut(s) 1401
Bst2UI CCWGG 1 cut(s) 1477
Bst4CI ACNGT 4 cut(s) 905, 1175, 1183, 1392
Bst6I CTCTTC 1 cut(s) 123
BstC8I GCNNGC 3 cut(s) 975, 1027, 1286
BstDEI CTNAG 5 cut(s) 52, 758, 1326, 1338, 1530
BstDSI CCRYGG 1 cut(s) 1388
BstF5I GGATG 2 cut(s) 856, 1498
BstFNI CGCG 1 cut(s) 1013
BstHHI GCGC 2 cut(s) 1015, 1234
BstKTI GATC 3 cut(s) 33, 94, 262
BstMAI GTCTC 1 cut(s) 1322
BstMBI GATC 3 cut(s) 30, 91, 259
BstMCI CGRYCG 1 cut(s) 1394
BstMWI GCNNNNNNNGC 8 cut(s) 838, 945, 974, 1058, 1136, 1168, 1229, 1285
BstNI CCWGG 1 cut(s) 1477
BstNSI RCATGY 3 cut(s) 1008, 1379, 1421
BstSCI CCNGG 5 cut(s) 286, 287, 588, 695, 1475
BstSFI CTRYAG 4 cut(s) 214, 768, 864, 1059
BstSLI GKGCMC 2 cut(s) 337, 1408
BstUI CGCG 1 cut(s) 1013
BstV1I GCAGC 8 cut(s) 219, 256, 396, 490, 493, 878, 1045, 1148
BstV2I GAAGAC 3 cut(s) 471, 1098, 1259
BsuRI GGCC 2 cut(s) 819, 1105
BtgI CCRYGG 1 cut(s) 1388
BtsCI GGATG 2 cut(s) 856, 1498
BtsI GCAGTG 2 cut(s) 335, 1047
BtsIMutI CAGTG 4 cut(s) 335, 910, 1047, 1060
BveI ACCTGC 1 cut(s) 691
Cac8I GCNNGC 3 cut(s) 975, 1027, 1286
CaiI CAGNNNCTG 1 cut(s) 213
CciI TCATGA 1 cut(s) 892
CfoI GCGC 2 cut(s) 1015, 1234
Cfr13I GGNCC 1 cut(s) 1479
Cfr9I CCCGGG 1 cut(s) 287
Csp6I GTAC 3 cut(s) 278, 435, 1364
CspCI CAANNNNNGTGG 1 cut(s) 1523
CviQI GTAC 3 cut(s) 278, 435, 1364
DdeI CTNAG 5 cut(s) 52, 758, 1326, 1338, 1530
DpnI GATC 3 cut(s) 32, 93, 261
DpnII GATC 3 cut(s) 30, 91, 259
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Eco130I CCWWGG 1 cut(s) 83
Eco147I AGGCCT 1 cut(s) 819
Eco47I GGWCC 1 cut(s) 1479
Eco88I CYCGRG 1 cut(s) 287
EcoRII CCWGG 1 cut(s) 1475
EcoT14I CCWWGG 1 cut(s) 83
EcoT22I ATGCAT 1 cut(s) 1443
ErhI CCWWGG 1 cut(s) 83
FaqI GGGAC 1 cut(s) 304
FbaI TGATCA 1 cut(s) 30
Fnu4HI GCNGC 9 cut(s) 208, 245, 385, 504, 507, 867, 1059, 1137, 1224
FokI GGATG 2 cut(s) 863, 1505
Fsp4HI GCNGC 9 cut(s) 208, 245, 385, 504, 507, 867, 1059, 1137, 1224
FspAI RTGCGCAY 1 cut(s) 1233
FspBI CTAG 6 cut(s) 114, 257, 548, 569, 1017, 1140
FspI TGCGCA 1 cut(s) 1233
GlaI GCGC 2 cut(s) 1014, 1233
GluI GCNGC 9 cut(s) 208, 245, 385, 504, 507, 867, 1059, 1137, 1224
GsuI CTGGAG 1 cut(s) 1342
HaeIII GGCC 2 cut(s) 819, 1105
HapII CCGG 4 cut(s) 288, 590, 696, 1289
HhaI GCGC 2 cut(s) 1015, 1234
Hin6I GCGC 2 cut(s) 1013, 1232
HinP1I GCGC 2 cut(s) 1013, 1232
HincII GTYRAC 1 cut(s) 1344
HindII GTYRAC 1 cut(s) 1344
HindIII AAGCTT 1 cut(s) 406
HinfI GANTC 9 cut(s) 253, 292, 311, 519, 593, 724, 896, 1201, 1355
HpaII CCGG 4 cut(s) 288, 590, 696, 1289
HphI GGTGA 5 cut(s) 488, 572, 613, 715, 1404
Hpy166II GTNNAC 4 cut(s) 22, 335, 1344, 1406
Hpy188I TCNGA 6 cut(s) 35, 310, 901, 919, 982, 1084
Hpy188III TCNNGA 9 cut(s) 257, 354, 516, 548, 574, 721, 737, 893, 1359
Hpy8I GTNNAC 4 cut(s) 22, 335, 1344, 1406
HpyAV CCTTC 3 cut(s) 89, 115, 598
HpyCH4III ACNGT 4 cut(s) 905, 1175, 1183, 1392
HpyF10VI GCNNNNNNNGC 8 cut(s) 838, 945, 974, 1058, 1136, 1168, 1229, 1285
HpyF3I CTNAG 5 cut(s) 52, 758, 1326, 1338, 1530
HspAI GCGC 2 cut(s) 1013, 1232
Ksp22I TGATCA 1 cut(s) 30
Kzo9I GATC 3 cut(s) 30, 91, 259
LmnI GCTCC 2 cut(s) 152, 1401
Lsp1109I GCAGC 8 cut(s) 219, 256, 396, 490, 493, 878, 1045, 1148
LweI GCATC 4 cut(s) 841, 898, 986, 1266
MaeI CTAG 6 cut(s) 114, 257, 548, 569, 1017, 1140
MaeIII GTNAC 4 cut(s) 707, 1007, 1045, 1262
MalI GATC 3 cut(s) 32, 93, 261
MboI GATC 3 cut(s) 30, 91, 259
MboII GAAGA 9 cut(s) 130, 137, 140, 146, 476, 758, 1103, 1264, 1421
MhlI GDGCHC 2 cut(s) 337, 1408
MluCI AATT 4 cut(s) 138, 857, 1164, 1293
MlyI GAGTC 4 cut(s) 286, 905, 1210, 1349
MmeI TCCRAC 3 cut(s) 299, 1136, 1202
Mph1103I ATGCAT 1 cut(s) 1443
MroXI GAANNNNTTC 2 cut(s) 11, 407
MseI TTAA 1 cut(s) 459
MslI CAYNNNNRTG 1 cut(s) 474
MspI CCGG 4 cut(s) 288, 590, 696, 1289
MspR9I CCNGG 5 cut(s) 288, 289, 590, 697, 1477
Mva1269I GAATGC 1 cut(s) 445
MvaI CCWGG 1 cut(s) 1477
MvnI CGCG 1 cut(s) 1013
MwoI GCNNNNNNNGC 8 cut(s) 838, 945, 974, 1058, 1136, 1168, 1229, 1285
NciI CCSGG 4 cut(s) 288, 289, 590, 697
NdeII GATC 3 cut(s) 30, 91, 259
NlaIV GGNNCC 3 cut(s) 883, 1161, 1172
NmuCI GTSAC 2 cut(s) 1045, 1262
NsbI TGCGCA 1 cut(s) 1233
NsiI ATGCAT 1 cut(s) 1443
NspI RCATGY 3 cut(s) 1008, 1379, 1421
PagI TCATGA 1 cut(s) 892
PaqCI CACCTGC 1 cut(s) 691
PceI AGGCCT 1 cut(s) 819
PciI ACATGT 1 cut(s) 1004
PctI GAATGC 1 cut(s) 445
PdmI GAANNNNTTC 2 cut(s) 11, 407
PfeI GAWTC 5 cut(s) 253, 311, 519, 593, 724
PflFI GACNNNGTC 2 cut(s) 543, 1097
PkrI GCNGC 9 cut(s) 209, 246, 386, 505, 508, 868, 1060, 1138, 1225
PleI GAGTC 4 cut(s) 286, 904, 1209, 1349
PpsI GAGTC 4 cut(s) 286, 904, 1209, 1349
PscI ACATGT 1 cut(s) 1004
Psp6I CCWGG 1 cut(s) 1475
PspGI CCWGG 1 cut(s) 1475
PspN4I GGNNCC 3 cut(s) 883, 1161, 1172
PspPI GGNCC 1 cut(s) 1479
PstI CTGCAG 2 cut(s) 868, 1063
PstNI CAGNNNCTG 1 cut(s) 213
PsyI GACNNNGTC 2 cut(s) 543, 1097
RsaI GTAC 3 cut(s) 279, 436, 1365
RsaNI GTAC 3 cut(s) 278, 435, 1364
RseI CAYNNNNRTG 1 cut(s) 474
SaqAI TTAA 1 cut(s) 459
SatI GCNGC 9 cut(s) 208, 245, 385, 504, 507, 867, 1059, 1137, 1224
Sau3AI GATC 3 cut(s) 30, 91, 259
Sau96I GGNCC 1 cut(s) 1479
SchI GAGTC 4 cut(s) 286, 905, 1210, 1349
ScrFI CCNGG 5 cut(s) 288, 289, 590, 697, 1477
SduI GDGCHC 2 cut(s) 337, 1408
SfaNI GCATC 4 cut(s) 841, 898, 986, 1266
SfcI CTRYAG 4 cut(s) 214, 768, 864, 1059
SinI GGWCC 1 cut(s) 1479
SmaI CCCGGG 1 cut(s) 289
SmiMI CAYNNNNRTG 1 cut(s) 474
SmlI CTYRAG 1 cut(s) 821
SmoI CTYRAG 1 cut(s) 821
Sse9I AATT 4 cut(s) 138, 857, 1164, 1293
SseBI AGGCCT 1 cut(s) 819
SsiI CCGC 1 cut(s) 1223
SspMI CTAG 6 cut(s) 114, 257, 548, 569, 1017, 1140
StuI AGGCCT 1 cut(s) 819
StyD4I CCNGG 5 cut(s) 286, 287, 588, 695, 1475
StyI CCWWGG 1 cut(s) 83
TaaI ACNGT 4 cut(s) 905, 1175, 1183, 1392
TaqI TCGA 2 cut(s) 221, 353
TaqII GACCGA 1 cut(s) 1496
TasI AATT 4 cut(s) 138, 857, 1164, 1293
TatI WGTACW 2 cut(s) 434, 1363
TauI GCSGC 1 cut(s) 1226
TfiI GAWTC 5 cut(s) 253, 311, 519, 593, 724
Tru1I TTAA 1 cut(s) 459
Tru9I TTAA 1 cut(s) 459
TscAI CASTG 4 cut(s) 342, 910, 1054, 1060
TseFI GTSAC 2 cut(s) 1045, 1262
TseI GCWGC 8 cut(s) 207, 244, 384, 503, 506, 866, 1058, 1136
Tsp45I GTSAC 2 cut(s) 1045, 1262
TspDTI ATGAA 8 cut(s) 227, 281, 477, 585, 635, 1160, 1291, 1426
TspMI CCCGGG 1 cut(s) 287
TspRI CASTG 4 cut(s) 342, 910, 1054, 1060
Tth111I GACNNNGTC 2 cut(s) 543, 1097
VneI GTGCAC 2 cut(s) 333, 1404
VpaK11BI GGWCC 1 cut(s) 1479
XapI RAATTY 2 cut(s) 857, 1293
XbaI TCTAGA 2 cut(s) 256, 547
XceI RCATGY 3 cut(s) 1008, 1379, 1421
XmaI CCCGGG 1 cut(s) 287
XmnI GAANNNNTTC 2 cut(s) 11, 407
XspI CTAG 6 cut(s) 114, 257, 548, 569, 1017, 1140
Zsp2I ATGCAT 1 cut(s) 1443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.