AT2G03070

mediator of RNA polymerase II transcription subunit

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
905513 .. 909272
3760 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G03070.1

Sequence Viewer

Length: 1575 bp
ATGGAGACACAGCCGCAGCAACCACCTCCTCCTCCGGTAGCTGAGAAGCTGAATCCAAAACTGGAGAAGGAACTGAATCTGGAGTCGTTGAAGACACGAGCCGTTAGCTTGGCCAAAGCCATTGCTCGAATCCTTGAAGATTTCGACGCTTATGGTCGAACCAACACTACTCCTAAATGGCAGGATATTCTAGGGCAGTATTCGATGGTAAATCTCGAGCTTTTTAACATTGTGGAAGAAGTAAAGAGAGTTTCAAATGCGTTTGTTGTGCTTCCTAAGAACGTCAATGCTATGAACGCTGCAATTTTACCGGTTATGTTGTCTTCGAAATTACTACCGGAGATGGAAACTGATGACAATGCCAAGAGAGAGCAGTTGCTTCAAGGTGTTCAGAGTTTGCCTATACCAATGCAAATCGAAAGGCTTAAGGCGAGGATGGATATGATTGCAGCAGCTTGTGAAAATGCAGAAAGAGTATTAGCTGATACTCGTAAAGCTTACGGATTTGGCACTCGTCAAGGCCCGTCTATGCTTCCTACTATGGATAAAGGTCAAGCTGCAAAGATTCAGGAGCAGGAGAAAATGCTACGAGATGCTGTAAATGACGGTAAAGGAACACAACTGCCTCCAGACCAGAGACAGATAACCACTGCACTTCCACCACATCTGGCAGATGTGCTAATTATCAATGATGCAGGTAAGATTGCATTACCTGGGCAATCAAACAACATTAACAATCAAGGAATGATGCAGGTTTCCGGGACTCAATTTGTGGGAAGATCAGCTGCATCTCCATCTGGTCCTAATTTTGATAACACAACATCTCCCTTACCATATTCCAATTCTCCTCGCGCTACGGGTATGGTTAATGTGCCTTCGCCTCAGCATCAAATCCAGCAACAACAGTTTCAACAGCAGCAGCAAAGGTCAAAATTAATGCAGTTGCCTCAACATCAGCAGCAGCAACTACTTGCACAACAACAACAACAGCTCAGGCAATCTTCTATGCAGGGATTGGGTCAAAGTCAGATACCAGCACTTCATGATATGCATGGGCAAGCTCAGCAAAAGTTTCAGACGTCACATGGGCAACATCAAATGCCATATTCCCAGCCAATGGGCGCGCACCAACAATTCCAAGCTAGACAGCTCTCAGGTGGACATATTCAGCATAGCATGTCTCAAGGACAGCTCAATCCAGCGATGAACCGTCACTTAAACCAGTTTTCAGGTGGAGCCAATAGTGCATTGTTTACTTCTGCACAAGGCTCCCCAAGTAGCCAAATGATACCAAACATGTCATCTATGCAATCTCAGACACTTGTTCCTAGGATGCAGCAATTTGGAGTTTCGGGTACCAATCCCCAAAGAAGCCATTCGTCTCAAATGTTGGGTGACCAGATGTTTAACACCAGCGGAATGATGCAAACACAGCAAACACAAATTCAGCAATCGCAACAGCAGCAGCAGCAGCAACAACAAGGAGGCTATGGAAATATGCAGACGAATCAGCAGAGTCTACAGCCTAATAACATGATGCAGAATGCTCAACAAAGGCACCAAAATCCTCAATAA

Protein Analysis

524

Amino Acids

58.16

Weight (kDa)

9.42

Isoelectric Point (pI)

58.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1082
Acc36I ACCTGC 2 cut(s) 686, 742
Acc65I GGTACC 1 cut(s) 1355
AccB1I GGYRCC 2 cut(s) 1355, 1557
AccB7I CCANNNNNTGG 1 cut(s) 1117
AccI GTMKAC 1 cut(s) 1519
AccII CGCG 2 cut(s) 852, 1124
AciI CCGC 2 cut(s) 14, 1416
AcoI YGGCCR 1 cut(s) 111
AcsI RAATTY 1 cut(s) 1443
AcyI GRCGYC 1 cut(s) 1079
AfaI GTAC 1 cut(s) 1357
AfiI CCNNNNNNNGG 1 cut(s) 1117
AflII CTTAAG 1 cut(s) 425
AflIII ACRYGT 1 cut(s) 1296
AgeI ACCGGT 1 cut(s) 310
AgsI TTSAA 5 cut(s) 91, 137, 255, 383, 911
AjnI CCWGG 1 cut(s) 712
Alw26I GTCTC 3 cut(s) 631, 1185, 1386
Ama87I CYCGRG 1 cut(s) 215
AoxI GGCC 2 cut(s) 111, 520
ApoI RAATTY 1 cut(s) 1443
AseI ATTAAT 1 cut(s) 935
AsiGI ACCGGT 1 cut(s) 310
Asp700I GAANNNNTTC 1 cut(s) 1375
Asp718I GGTACC 1 cut(s) 1355
AspA2I CCTAGG 1 cut(s) 1328
AspLEI GCGC 3 cut(s) 854, 1124, 1126
AspS9I GGNCC 2 cut(s) 521, 800
AsuC2I CCSGG 1 cut(s) 760
AsuHPI GGTGA 1 cut(s) 1406
AsuII TTCGAA 1 cut(s) 326
AvaI CYCGRG 1 cut(s) 215
AvaII GGWCC 1 cut(s) 800
AvrII CCTAGG 1 cut(s) 1328
BalI TGGCCA 1 cut(s) 113
BanI GGYRCC 2 cut(s) 1355, 1557
BauI CACGAG 1 cut(s) 96
BbsI GAAGAC 2 cut(s) 98, 315
BbvCI CCTCAGC 1 cut(s) 882
BccI CCATC 4 cut(s) 199, 337, 430, 802
BceAI ACGGC 1 cut(s) 86
BciT130I CCWGG 1 cut(s) 714
BcnI CCSGG 1 cut(s) 760
BcoDI GTCTC 3 cut(s) 631, 1185, 1386
BfaI CTAG 3 cut(s) 191, 1143, 1329
BfmI CTRYAG 1 cut(s) 1520
BfrI CTTAAG 1 cut(s) 425
BfuAI ACCTGC 2 cut(s) 686, 742
BlnI CCTAGG 1 cut(s) 1328
BlpI GCTNAGC 1 cut(s) 1062
Bme1390I CCNGG 2 cut(s) 714, 760
Bme18I GGWCC 1 cut(s) 800
BmeT110I CYCGRG 1 cut(s) 215
BmgT120I GGNCC 2 cut(s) 521, 800
BmiI GGNNCC 4 cut(s) 1237, 1270, 1357, 1559
BmrFI CCNGG 2 cut(s) 714, 760
BmsI GCATC 8 cut(s) 583, 682, 738, 797, 895, 1323, 1413, 1527
BpiI GAAGAC 2 cut(s) 98, 315
BpmI CTGGAG 3 cut(s) 83, 101, 612
Bpu10I CCTNAGC 2 cut(s) 882, 992
Bpu1102I GCTNAGC 1 cut(s) 1062
Bpu14I TTCGAA 1 cut(s) 326
BpuEI CTTGAG 1 cut(s) 1167
BpuMI CCSGG 1 cut(s) 760
BsaHI GRCGYC 1 cut(s) 1079
BsaJI CCNNGG 2 cut(s) 713, 1328
BsaWI WCCGGW 3 cut(s) 34, 310, 337
BsaXI ACNNNNNCTCC 2 cut(s) 808, 838
Bsc4I CCNNNNNNNGG 1 cut(s) 1117
Bse118I RCCGGY 1 cut(s) 310
Bse1I ACTGG 2 cut(s) 66, 1222
Bse3DI GCAATG 1 cut(s) 120
BseBI CCWGG 1 cut(s) 714
BseDI CCNNGG 2 cut(s) 713, 1328
BseGI GGATG 2 cut(s) 441, 1338
BseLI CCNNNNNNNGG 1 cut(s) 1117
BseMI GCAATG 1 cut(s) 120
BseMII CTCAG 6 cut(s) 33, 896, 1006, 1076, 1167, 1328
BseNI ACTGG 2 cut(s) 66, 1222
BsePI GCGCGC 1 cut(s) 1122
BseRI GAGGAG 3 cut(s) 18, 21, 837
BseYI CCCAGC 1 cut(s) 1110
BsgI GTGCAG 2 cut(s) 636, 1245
Bsh1236I CGCG 2 cut(s) 852, 1124
BshFI GGCC 2 cut(s) 113, 522
BshNI GGYRCC 2 cut(s) 1355, 1557
BshTI ACCGGT 1 cut(s) 310
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 4 cut(s) 35, 311, 338, 759
BslFI GGGAC 1 cut(s) 775
BslI CCNNNNNNNGG 1 cut(s) 1117
BsmAI GTCTC 3 cut(s) 631, 1185, 1386
BsmBI CGTCTC 1 cut(s) 1386
BsmFI GGGAC 1 cut(s) 775
BsmI GAATGC 1 cut(s) 1549
BsnI GGCC 2 cut(s) 113, 522
BsoBI CYCGRG 1 cut(s) 215
Bsp119I TTCGAA 1 cut(s) 326
Bsp143I GATC 1 cut(s) 779
Bsp1720I GCTNAGC 1 cut(s) 1062
BspACI CCGC 2 cut(s) 14, 1416
BspANI GGCC 2 cut(s) 113, 522
BspCNI CTCAG 6 cut(s) 34, 895, 1005, 1075, 1166, 1327
BspFNI CGCG 2 cut(s) 852, 1124
BspHI TCATGA 1 cut(s) 1042
BspLI GGNNCC 4 cut(s) 1237, 1270, 1357, 1559
BspMI ACCTGC 2 cut(s) 686, 742
BspT104I TTCGAA 1 cut(s) 326
BspT107I GGYRCC 2 cut(s) 1355, 1557
BspTI CTTAAG 1 cut(s) 425
BsrDI GCAATG 1 cut(s) 120
BsrFI RCCGGY 1 cut(s) 310
BsrI ACTGG 2 cut(s) 66, 1222
BssAI RCCGGY 1 cut(s) 310
BssECI CCNNGG 2 cut(s) 713, 1328
BssHII GCGCGC 1 cut(s) 1122
BssMI GATC 1 cut(s) 779
BssNI GRCGYC 1 cut(s) 1079
BssSI CACGAG 1 cut(s) 96
BssT1I CCWWGG 1 cut(s) 1328
Bst2BI CACGAG 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 714
Bst4CI ACNGT 3 cut(s) 608, 906, 1211
BstACI GRCGYC 1 cut(s) 1079
BstAFI CTTAAG 1 cut(s) 425
BstBI TTCGAA 1 cut(s) 326
BstC8I GCNNGC 2 cut(s) 1059, 1124
BstDEI CTNAG 7 cut(s) 42, 276, 882, 992, 1062, 1153, 1314
BstEII GGTNACC 1 cut(s) 1394
BstF5I GGATG 2 cut(s) 441, 1338
BstFNI CGCG 2 cut(s) 852, 1124
BstHHI GCGC 3 cut(s) 854, 1124, 1126
BstKTI GATC 1 cut(s) 782
BstMAI GTCTC 3 cut(s) 631, 1185, 1386
BstMBI GATC 1 cut(s) 779
BstMWI GCNNNNNNNGC 7 cut(s) 296, 1063, 1244, 1432, 1462, 1468, 1471
BstNI CCWGG 1 cut(s) 714
BstNSI RCATGY 2 cut(s) 1180, 1300
BstPI GGTNACC 1 cut(s) 1394
BstSCI CCNGG 2 cut(s) 712, 758
BstSFI CTRYAG 1 cut(s) 1520
BstUI CGCG 2 cut(s) 852, 1124
BstV2I GAAGAC 2 cut(s) 98, 315
BsuRI GGCC 2 cut(s) 113, 522
BtgZI GCGATG 1 cut(s) 1217
BtsCI GGATG 2 cut(s) 441, 1338
BtsI GCAGTG 1 cut(s) 648
BtsIMutI CAGTG 1 cut(s) 648
BveI ACCTGC 2 cut(s) 686, 742
Cac8I GCNNGC 2 cut(s) 1059, 1124
CciI TCATGA 1 cut(s) 1042
CfoI GCGC 3 cut(s) 854, 1124, 1126
Cfr10I RCCGGY 1 cut(s) 310
Cfr13I GGNCC 2 cut(s) 521, 800
CseI GACGC 1 cut(s) 155
Csp6I GTAC 1 cut(s) 1356
CspAI ACCGGT 1 cut(s) 310
CviAII CATG 6 cut(s) 1043, 1052, 1085, 1177, 1297, 1534
CviQI GTAC 1 cut(s) 1356
DdeI CTNAG 7 cut(s) 42, 276, 882, 992, 1062, 1153, 1314
DpnI GATC 1 cut(s) 781
DpnII GATC 1 cut(s) 779
EaeI YGGCCR 1 cut(s) 111
Eco130I CCWWGG 1 cut(s) 1328
Eco47I GGWCC 1 cut(s) 800
Eco88I CYCGRG 1 cut(s) 215
Eco91I GGTNACC 1 cut(s) 1394
EcoO65I GGTNACC 1 cut(s) 1394
EcoRII CCWGG 1 cut(s) 712
EcoT14I CCWWGG 1 cut(s) 1328
EcoT22I ATGCAT 1 cut(s) 1053
ErhI CCWWGG 1 cut(s) 1328
Esp3I CGTCTC 1 cut(s) 1386
FaeI CATG 6 cut(s) 1046, 1055, 1088, 1180, 1300, 1537
FaqI GGGAC 1 cut(s) 775
FatI CATG 6 cut(s) 1042, 1051, 1084, 1176, 1296, 1533
FblI GTMKAC 1 cut(s) 1519
FokI GGATG 2 cut(s) 448, 1345
FspBI CTAG 3 cut(s) 191, 1143, 1329
GlaI GCGC 3 cut(s) 853, 1123, 1125
GsaI CCCAGC 1 cut(s) 1114
GsuI CTGGAG 3 cut(s) 83, 101, 612
HaeIII GGCC 2 cut(s) 113, 522
HapII CCGG 4 cut(s) 35, 311, 338, 759
HgaI GACGC 1 cut(s) 155
HhaI GCGC 3 cut(s) 854, 1124, 1126
Hin1I GRCGYC 1 cut(s) 1079
Hin1II CATG 6 cut(s) 1046, 1055, 1088, 1180, 1300, 1537
Hin6I GCGC 3 cut(s) 852, 1122, 1124
HinP1I GCGC 3 cut(s) 852, 1122, 1124
HindIII AAGCTT 1 cut(s) 495
HinfI GANTC 8 cut(s) 52, 76, 83, 129, 565, 763, 1507, 1516
HpaII CCGG 4 cut(s) 35, 311, 338, 759
HphI GGTGA 1 cut(s) 1406
Hpy166II GTNNAC 3 cut(s) 1160, 1254, 1520
Hpy188I TCNGA 4 cut(s) 393, 1029, 1077, 1317
Hpy188III TCNNGA 5 cut(s) 80, 215, 569, 629, 1043
Hpy8I GTNNAC 3 cut(s) 1160, 1254, 1520
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 2 cut(s) 61, 885
HpyCH4III ACNGT 3 cut(s) 608, 906, 1211
HpyCH4IV ACGT 2 cut(s) 282, 1079
HpyF10VI GCNNNNNNNGC 7 cut(s) 296, 1063, 1244, 1432, 1462, 1468, 1471
HpyF3I CTNAG 7 cut(s) 42, 276, 882, 992, 1062, 1153, 1314
HpySE526I ACGT 2 cut(s) 282, 1079
Hsp92I GRCGYC 1 cut(s) 1079
Hsp92II CATG 6 cut(s) 1046, 1055, 1088, 1180, 1300, 1537
HspAI GCGC 3 cut(s) 852, 1122, 1124
KpnI GGTACC 1 cut(s) 1359
Kzo9I GATC 1 cut(s) 779
LmnI GCTCC 3 cut(s) 571, 1235, 1274
LweI GCATC 8 cut(s) 583, 682, 738, 797, 895, 1323, 1413, 1527
MaeI CTAG 3 cut(s) 191, 1143, 1329
MaeII ACGT 2 cut(s) 282, 1079
MaeIII GTNAC 3 cut(s) 1080, 1211, 1394
MalI GATC 1 cut(s) 781
MboI GATC 1 cut(s) 779
MboII GAAGA 6 cut(s) 103, 149, 248, 315, 789, 993
MlsI TGGCCA 1 cut(s) 113
MluNI TGGCCA 1 cut(s) 113
MlyI GAGTC 3 cut(s) 92, 757, 1525
MnlI CCTC 9 cut(s) 36, 39, 42, 426, 636, 858, 891, 957, 1478
Mox20I TGGCCA 1 cut(s) 113
Mph1103I ATGCAT 1 cut(s) 1053
MroXI GAANNNNTTC 1 cut(s) 1375
MscI TGGCCA 1 cut(s) 113
MseI TTAA 7 cut(s) 225, 426, 732, 867, 935, 1217, 1407
Msp20I TGGCCA 1 cut(s) 113
MspA1I CMGCKG 2 cut(s) 785, 1416
MspCI CTTAAG 1 cut(s) 425
MspI CCGG 4 cut(s) 35, 311, 338, 759
MspR9I CCNGG 2 cut(s) 714, 760
Mva1269I GAATGC 1 cut(s) 1549
MvaI CCWGG 1 cut(s) 714
MvnI CGCG 2 cut(s) 852, 1124
MwoI GCNNNNNNNGC 7 cut(s) 296, 1063, 1244, 1432, 1462, 1468, 1471
NciI CCSGG 1 cut(s) 760
NdeII GATC 1 cut(s) 779
NlaIII CATG 6 cut(s) 1046, 1055, 1088, 1180, 1300, 1537
NlaIV GGNNCC 4 cut(s) 1237, 1270, 1357, 1559
NmuCI GTSAC 3 cut(s) 1080, 1211, 1394
NsiI ATGCAT 1 cut(s) 1053
NspI RCATGY 2 cut(s) 1180, 1300
NspV TTCGAA 1 cut(s) 326
PaeR7I CTCGAG 1 cut(s) 215
PagI TCATGA 1 cut(s) 1042
PauI GCGCGC 1 cut(s) 1122
PciI ACATGT 1 cut(s) 1296
PctI GAATGC 1 cut(s) 1549
PdmI GAANNNNTTC 1 cut(s) 1375
PfeI GAWTC 5 cut(s) 52, 76, 129, 565, 1507
PflMI CCANNNNNTGG 1 cut(s) 1117
PfoI TCCNGGA 1 cut(s) 758
PinAI ACCGGT 1 cut(s) 310
PleI GAGTC 3 cut(s) 91, 757, 1524
PpsI GAGTC 3 cut(s) 91, 757, 1524
PscI ACATGT 1 cut(s) 1296
PshBI ATTAAT 1 cut(s) 935
Psp6I CCWGG 1 cut(s) 712
PspEI GGTNACC 1 cut(s) 1394
PspFI CCCAGC 1 cut(s) 1110
PspGI CCWGG 1 cut(s) 712
PspN4I GGNNCC 4 cut(s) 1237, 1270, 1357, 1559
PspPI GGNCC 2 cut(s) 521, 800
PsrI GAACNNNNNNTAC 2 cut(s) 151, 183
PteI GCGCGC 1 cut(s) 1122
PvuII CAGCTG 1 cut(s) 785
RsaI GTAC 1 cut(s) 1357
RsaNI GTAC 1 cut(s) 1356
SaqAI TTAA 7 cut(s) 225, 426, 732, 867, 935, 1217, 1407
Sau3AI GATC 1 cut(s) 779
Sau96I GGNCC 2 cut(s) 521, 800
SchI GAGTC 3 cut(s) 92, 757, 1525
ScrFI CCNGG 2 cut(s) 714, 760
SfaNI GCATC 8 cut(s) 583, 682, 738, 797, 895, 1323, 1413, 1527
SfcI CTRYAG 1 cut(s) 1520
Sfr274I CTCGAG 1 cut(s) 215
SfuI TTCGAA 1 cut(s) 326
SinI GGWCC 1 cut(s) 800
SlaI CTCGAG 1 cut(s) 215
SmlI CTYRAG 3 cut(s) 215, 425, 1182
SmoI CTYRAG 3 cut(s) 215, 425, 1182
SsiI CCGC 2 cut(s) 14, 1416
SspMI CTAG 3 cut(s) 191, 1143, 1329
StyD4I CCNGG 2 cut(s) 712, 758
StyI CCWWGG 1 cut(s) 1328
TaaI ACNGT 3 cut(s) 608, 906, 1211
TaiI ACGT 2 cut(s) 285, 1082
TaqI TCGA 7 cut(s) 127, 144, 157, 203, 216, 326, 417
TauI GCSGC 1 cut(s) 16
TfiI GAWTC 5 cut(s) 52, 76, 129, 565, 1507
Tru1I TTAA 7 cut(s) 225, 426, 732, 867, 935, 1217, 1407
Tru9I TTAA 7 cut(s) 225, 426, 732, 867, 935, 1217, 1407
TscAI CASTG 1 cut(s) 655
TseFI GTSAC 3 cut(s) 1080, 1211, 1394
Tsp45I GTSAC 3 cut(s) 1080, 1211, 1394
TspDTI ATGAA 3 cut(s) 308, 1031, 1220
TspGWI ACGGA 1 cut(s) 516
TspRI CASTG 1 cut(s) 655
Van91I CCANNNNNTGG 1 cut(s) 1117
Vha464I CTTAAG 1 cut(s) 425
VpaK11BI GGWCC 1 cut(s) 800
VspI ATTAAT 1 cut(s) 935
XapI RAATTY 1 cut(s) 1443
XceI RCATGY 2 cut(s) 1180, 1300
XcmI CCANNNNNNNNNTGG 1 cut(s) 1229
XhoI CTCGAG 1 cut(s) 215
XmaJI CCTAGG 1 cut(s) 1328
XmiI GTMKAC 1 cut(s) 1519
XmnI GAANNNNTTC 1 cut(s) 1375
XspI CTAG 3 cut(s) 191, 1143, 1329
ZraI GACGTC 1 cut(s) 1080
Zsp2I ATGCAT 1 cut(s) 1053
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.