Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0008407

Physical Location & Seq

Genomic Coordinates Forward (+)

43853953 .. 43855014

Gene Structure 1062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0354600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGCGAGCAAGTGTGTGTCTGTTGTTATGTTGTTTGCTGTTGTGCTGAGCTTCACCCAGTCAGTACAAGGAAGGAAGTTACTCAAGTTAGAGGAACCTCATCACAAGGATGGTGGTGGTGAACAAGTTGAAAAGCCACTCTGGTTTTATGATAGCAATCCGAGTGGGGCTGGTTCTGTAGGTGGGAAAGGGTATGGTTTTGGCCATTCTTTCAGTTTCGGCAAGGGATCATATGGTTATAGTTATGGTACTTCTGGGAAACCTGGCGTTGGTTTTGGAAAACCTGATTGTATCGGGAAAGGTGGAGGAGCCAGAGGAATTGGTGGAGGTGGTGGAAAGCTACGCAAGAAGAAAGAAAAGGAGCACCATCAACATAAAGGAAGTGGGGGTGGTATTGGAGGCGCTAGAGGGGGAGGCATCAGAAAAGGAGGCGGTGTTGGTGGAAGCATTGGACATGGAGGGAAAGGTAGCAAAGGTGGTATTGGTGAAGGGACAAGGAGAGGAGTTGGGGGCGGTGCTGGTGGAGGCGTAGGGGGCGGTGCTGGCAGAGGCGTAGGGGGAGGTGCTGGCGGTGGTGTAgggggaggtgctggcggtggtgtagggggcggtgctggcggaggagttgggggcggtgctggtggaggcgtagggggcggtgctggtggaggctttggaggaggtgctggtggcggcgttggaggaggtgctggtggcggcgttgggggcggtgctggtggaggcgttgggggcggtgctggtggcggcttcgggggcggtgctggtggaggcgTTGGGGGCGGTGCTGGTGGAGGCTTCGGGGGCGGTGCTGGTGGAGGCTTCGGAGGTGGAGTTGGTGGAGGCTTCGGGGGCGGTGCTGGTGGCGGATTTGGAGGAGGAGGCGATGGTGGAATTGGAAATGGCGGAGGCGCTGGTGGTGGATTTGGAGGAGGGATAGGCGGTGGAGGTAGTGGTGGAGGATTTGGTGGTGGTGGTGGGGGAGGATTTGGTGGTGTAGGAGGAGGATTTGGCGGTGGTTTAGGTGGCGGAGGACATCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

353

Amino Acids

29.56

Weight (kDa)

10.08

Isoelectric Point (pI)

38.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008407)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03070
fragaria_vesca	FvH4_4g04880 FvH4_4g04880 FvH4_4g04880 FvH4_4g04880
malus_domestica	MD16G1227300.v1.1
prunus_persica	Prupe.1G049400_v2.0.a1 Prupe.1G049400_v2.0.a1
pyrus_communis	pycom16g19050
rosa_chinensis	RchiOBHm_Chr4g0395701 RchiOBHm_Chr4g0395721
rosa_laevigata	RLG00000009603
rosa_multiflora	Rmu_sc0005389.1_g000008 Rmu_sc0005389.1_g000017
rosa_roxburghii	Rroxscaffold_5G00340570
rosa_rugosa	Rorug03G0354600 Rorug03G0354700 Rorug03G0354800
rosa_samantha	Rh4BG061100 Rh4CG067300 Rh4DG056500
rosa_wichuraiana	Rw4G004910 Rw4G004950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	235
AcoI	YGGCCR	1 cut(s)	202
AfaI	GTAC	2 cut(s)	66, 250
AfiI	CCNNNNNNNGG	1 cut(s)	269
AgsI	TTSAA	1 cut(s)	131
AjnI	CCWGG	1 cut(s)	262
AluBI	AGCT	2 cut(s)	51, 340
AluI	AGCT	2 cut(s)	51, 340
Alw21I	GWGCWC	1 cut(s)	366
AlwI	GGATC	1 cut(s)	235
AoxI	GGCC	1 cut(s)	202
AspLEI	GCGC	2 cut(s)	404, 932
AsuHPI	GGTGA	3 cut(s)	46, 131, 497
BalI	TGGCCA	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	366
BccI	CCATC	3 cut(s)	104, 375, 899
BciT130I	CCWGG	1 cut(s)	264
BfaI	CTAG	1 cut(s)	405
BfmI	CTRYAG	1 cut(s)	177
BfoI	RGCGCY	2 cut(s)	405, 933
BisI	GCNGC	3 cut(s)	694, 718, 766
BlpI	GCTNAGC	1 cut(s)	47
BlsI	GCNGC	3 cut(s)	695, 719, 767
Bme1390I	CCNGG	1 cut(s)	264
BmiI	GGNNCC	2 cut(s)	96, 310
BmrFI	CCNGG	1 cut(s)	264
BmrI	ACTGGG	1 cut(s)	52
BmsI	GCATC	1 cut(s)	426
BmuI	ACTGGG	1 cut(s)	52
Bpu1102I	GCTNAGC	1 cut(s)	47
BpuEI	CTTGAG	1 cut(s)	68
BsaBI	GATNNNNATC	1 cut(s)	156
BsaXI	ACNNNNNCTCC	4 cut(s)	420, 450, 837, 867
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
Bse1I	ACTGG	1 cut(s)	58
Bse8I	GATNNNNATC	1 cut(s)	156
BseBI	CCWGG	1 cut(s)	264
BseGI	GGATG	1 cut(s)	115
BseJI	GATNNNNATC	1 cut(s)	156
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	1 cut(s)	58
BseRI	GAGGAG	9 cut(s)	321, 516, 636, 693, 717, 909, 912, 963, 1035
BshFI	GGCC	1 cut(s)	204
BsiHKAI	GWGCWC	1 cut(s)	366
BslFI	GGGAC	1 cut(s)	505
BslI	CCNNNNNNNGG	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	505
BsnI	GGCC	1 cut(s)	204
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp143I	GATC	1 cut(s)	227
Bsp1720I	GCTNAGC	1 cut(s)	47
BspANI	GGCC	1 cut(s)	204
BspCNI	CTCAG	1 cut(s)	39
BspLI	GGNNCC	2 cut(s)	96, 310
BspPI	GGATC	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	58
BssMI	GATC	1 cut(s)	227
Bst2UI	CCWGG	1 cut(s)	264
BstC8I	GCNNGC	5 cut(s)	7, 544, 568, 592, 616
BstDEI	CTNAG	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	115
BstH2I	RGCGCY	2 cut(s)	405, 933
BstHHI	GCGC	2 cut(s)	404, 932
BstKTI	GATC	1 cut(s)	230
BstMBI	GATC	1 cut(s)	227
BstNI	CCWGG	1 cut(s)	264
BstSCI	CCNGG	1 cut(s)	262
BstSFI	CTRYAG	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	204
BtgZI	GCGATG	1 cut(s)	918
BtsCI	GGATG	1 cut(s)	115
Cac8I	GCNNGC	5 cut(s)	7, 544, 568, 592, 616
CfoI	GCGC	2 cut(s)	404, 932
Csp6I	GTAC	2 cut(s)	65, 249
CspCI	CAANNNNNGTGG	4 cut(s)	94, 129, 145, 180
CviAII	CATG	1 cut(s)	455
CviQI	GTAC	2 cut(s)	65, 249
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	1 cut(s)	229
DpnII	GATC	1 cut(s)	227
EaeI	YGGCCR	1 cut(s)	202
EciI	GGCGGA	4 cut(s)	633, 900, 939, 1062
EcoRII	CCWGG	1 cut(s)	262
FaeI	CATG	1 cut(s)	458
FaiI	YATR	9 cut(s)	29, 150, 195, 232, 234, 240, 246, 375, 456
FaqI	GGGAC	1 cut(s)	505
FatI	CATG	1 cut(s)	454
FauNDI	CATATG	1 cut(s)	232
Fnu4HI	GCNGC	3 cut(s)	694, 718, 766
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	3 cut(s)	694, 718, 766
FspBI	CTAG	1 cut(s)	405
GlaI	GCGC	2 cut(s)	403, 931
GluI	GCNGC	3 cut(s)	694, 718, 766
HaeII	RGCGCY	2 cut(s)	405, 933
HaeIII	GGCC	1 cut(s)	204
HhaI	GCGC	2 cut(s)	404, 932
Hin1II	CATG	1 cut(s)	458
Hin6I	GCGC	2 cut(s)	402, 930
HinP1I	GCGC	2 cut(s)	402, 930
HphI	GGTGA	3 cut(s)	46, 131, 497
Hpy166II	GTNNAC	1 cut(s)	122
Hpy188I	TCNGA	3 cut(s)	162, 422, 845
Hpy188III	TCNNGA	1 cut(s)	295
Hpy8I	GTNNAC	1 cut(s)	122
HpyAV	CCTTC	2 cut(s)	66, 482
HpyF3I	CTNAG	1 cut(s)	47
Hsp92II	CATG	1 cut(s)	458
HspAI	GCGC	2 cut(s)	402, 930
Kzo9I	GATC	1 cut(s)	227
LmnI	GCTCC	2 cut(s)	308, 361
LweI	GCATC	1 cut(s)	426
MaeI	CTAG	1 cut(s)	405
MaeIII	GTNAC	1 cut(s)	78
MalI	GATC	1 cut(s)	229
MboI	GATC	1 cut(s)	227
MboII	GAAGA	1 cut(s)	361
MhlI	GDGCHC	1 cut(s)	366
MlsI	TGGCCA	1 cut(s)	204
MluCI	AATT	2 cut(s)	318, 912
MluNI	TGGCCA	1 cut(s)	204
MmeI	TCCRAC	1 cut(s)	679
Mox20I	TGGCCA	1 cut(s)	204
MscI	TGGCCA	1 cut(s)	204
MslI	CAYNNNNRTG	1 cut(s)	108
Msp20I	TGGCCA	1 cut(s)	204
MspR9I	CCNGG	1 cut(s)	264
MvaI	CCWGG	1 cut(s)	264
NdeI	CATATG	1 cut(s)	232
NdeII	GATC	1 cut(s)	227
NlaIII	CATG	1 cut(s)	458
NlaIV	GGNNCC	2 cut(s)	96, 310
PkrI	GCNGC	3 cut(s)	695, 719, 767
Psp6I	CCWGG	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	262
PspN4I	GGNNCC	2 cut(s)	96, 310
RsaI	GTAC	2 cut(s)	66, 250
RsaNI	GTAC	2 cut(s)	65, 249
RseI	CAYNNNNRTG	1 cut(s)	108
SatI	GCNGC	3 cut(s)	694, 718, 766
Sau3AI	GATC	1 cut(s)	227
ScrFI	CCNGG	1 cut(s)	264
SduI	GDGCHC	1 cut(s)	366
SfaNI	GCATC	1 cut(s)	426
SfcI	CTRYAG	1 cut(s)	177
SmiMI	CAYNNNNRTG	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
Sse9I	AATT	2 cut(s)	318, 912
SspMI	CTAG	1 cut(s)	405
StyD4I	CCNGG	1 cut(s)	262
TasI	AATT	2 cut(s)	318, 912
TatI	WGTACW	1 cut(s)	64
TauI	GCSGC	3 cut(s)	696, 720, 768
XspI	CTAG	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.