Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0008407

Physical Location & Seq

Genomic Coordinates Forward (+)

43874711 .. 43875660

Gene Structure 950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0354800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAAGTTTTTTTCTGAGTATGGGGATTCTTCTGGGCAAATAATCAACAAAGAAAAGTCACAAGTCTTTATTGGTAAGCATTTGCATCGACGCCGGCACTCTATTTCCAGCTTCTTAGGTATTCCTTTGGGCTCTGCTCCATTCATATACTTGGGTGCCCCTATTTTTCATGGCAAGCCTCGCGTATCATATTTTCAGCCGATTGTGGATAAAATAAGGCTACGATTGTCAAGTTGGATGGGTTCTATTGATCGGCGGGGGATTCCTCTAGTGGCATGGCGGTCATGCTGTACTCCAGTTGATGAGGGTGGTTTAGGGCTTAAGCAACTTGTGCTCTTGAATCGTTCCTTATTATTAAAGCGCTGCTGGGAGGTTTTTTCTTCTCAATCTGAAGGTTGTTCATTCATTCGGAACCGGTTTATTCGGCGTCGTTCTTATGCTTCTTCTTCTATCTGGCCTGGGATTCGGCAATTTTGGGTTGTTGTTCAAGATAATGCTCGATGGTTAATTGGTTCAGGGGATAAGATTTCTTTTTGGAGGGATAATTTCTTGGGCAGACCCATTAGTCATTTCTTCGGTGTCCGTGTTGCATTACAGGACGATCTTCCAGACATGGTTTCGAGTTTTATTAGTAATGGTTCATGGGATTTGCCTCAGCTTCTACACTTCTATTTTCCATCCTTGTGTGATTGGATTAGTCAAGTTCCAATTGCCGCAGATCCTTCAGCAGAAGACAAACTTATTTTGACAGGACCCGCCCCGAATTACACCCTGAAATCCGAGGTGGCCCTGTGGGGCCCACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

268

Amino Acids

30.46

Weight (kDa)

9.71

Isoelectric Point (pI)

56.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008407)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03070
fragaria_vesca	FvH4_4g04880 FvH4_4g04880 FvH4_4g04880 FvH4_4g04880
malus_domestica	MD16G1227300.v1.1
prunus_persica	Prupe.1G049400_v2.0.a1 Prupe.1G049400_v2.0.a1
pyrus_communis	pycom16g19050
rosa_chinensis	RchiOBHm_Chr4g0395701 RchiOBHm_Chr4g0395721
rosa_laevigata	RLG00000009603
rosa_multiflora	Rmu_sc0005389.1_g000008 Rmu_sc0005389.1_g000017
rosa_roxburghii	Rroxscaffold_5G00340570
rosa_rugosa	Rorug03G0354600 Rorug03G0354700 Rorug03G0354800
rosa_samantha	Rh4BG061100 Rh4CG067300 Rh4DG056500
rosa_wichuraiana	Rw4G004910 Rw4G004950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	564
AccB1I	GGYRCC	1 cut(s)	155
AccII	CGCG	1 cut(s)	183
AciI	CCGC	4 cut(s)	256, 280, 714, 756
AclWI	GGATC	1 cut(s)	713
AcuI	CTGAAG	2 cut(s)	411, 708
AcyI	GRCGYC	2 cut(s)	91, 427
AfaI	GTAC	1 cut(s)	292
AfeI	AGCGCT	1 cut(s)	362
AflII	CTTAAG	1 cut(s)	320
AgeI	ACCGGT	1 cut(s)	414
AgsI	TTSAA	2 cut(s)	340, 488
AjnI	CCWGG	1 cut(s)	457
AluBI	AGCT	2 cut(s)	111, 658
AluI	AGCT	2 cut(s)	111, 658
Alw21I	GWGCWC	1 cut(s)	336
AlwI	GGATC	1 cut(s)	713
Aor51HI	AGCGCT	1 cut(s)	362
AoxI	GGCC	3 cut(s)	455, 786, 796
ApaI	GGGCCC	1 cut(s)	800
ApeKI	GCWGC	1 cut(s)	363
AsiGI	ACCGGT	1 cut(s)	414
AspLEI	GCGC	1 cut(s)	363
AspS9I	GGNCC	4 cut(s)	752, 787, 796, 797
AvaII	GGWCC	1 cut(s)	752
BaeGI	GKGCMC	2 cut(s)	160, 800
BanI	GGYRCC	1 cut(s)	155
BanII	GRGCYC	2 cut(s)	134, 800
BbsI	GAAGAC	1 cut(s)	738
Bbv12I	GWGCWC	1 cut(s)	336
BbvCI	CCTCAGC	1 cut(s)	654
BbvI	GCAGC	1 cut(s)	350
BccI	CCATC	3 cut(s)	232, 495, 685
BcgI	CGANNNNNNTGC	2 cut(s)	68, 102
BciT130I	CCWGG	1 cut(s)	459
BfaI	CTAG	1 cut(s)	269
BfoI	RGCGCY	1 cut(s)	364
BfrI	CTTAAG	1 cut(s)	320
BisI	GCNGC	2 cut(s)	364, 714
BlsI	GCNGC	2 cut(s)	365, 715
Bme1390I	CCNGG	1 cut(s)	459
Bme18I	GGWCC	1 cut(s)	752
BmgT120I	GGNCC	4 cut(s)	752, 787, 796, 797
BmiI	GGNNCC	5 cut(s)	157, 413, 754, 797, 798
BmrFI	CCNGG	1 cut(s)	459
BmsI	GCATC	1 cut(s)	94
BpiI	GAAGAC	1 cut(s)	738
BpmI	CTGGAG	1 cut(s)	279
Bpu10I	CCTNAGC	1 cut(s)	654
BsaHI	GRCGYC	2 cut(s)	91, 427
BsaJI	CCNNGG	2 cut(s)	458, 780
BsaWI	WCCGGW	1 cut(s)	414
Bse118I	RCCGGY	2 cut(s)	93, 414
Bse1I	ACTGG	1 cut(s)	296
BseBI	CCWGG	1 cut(s)	459
BseDI	CCNNGG	2 cut(s)	458, 780
BseGI	GGATG	2 cut(s)	243, 677
BseMII	CTCAG	2 cut(s)	6, 668
BseNI	ACTGG	1 cut(s)	296
BseSI	GKGCMC	2 cut(s)	160, 800
BseXI	GCAGC	1 cut(s)	350
BseYI	CCCAGC	1 cut(s)	366
Bsh1236I	CGCG	1 cut(s)	183
BshFI	GGCC	3 cut(s)	457, 788, 798
BshNI	GGYRCC	1 cut(s)	155
BshTI	ACCGGT	1 cut(s)	414
BsiHKAI	GWGCWC	1 cut(s)	336
BsiSI	CCGG	2 cut(s)	94, 415
BsnI	GGCC	3 cut(s)	457, 788, 798
Bsp120I	GGGCCC	1 cut(s)	796
Bsp1286I	GDGCHC	4 cut(s)	134, 160, 336, 800
Bsp143I	GATC	3 cut(s)	250, 601, 718
BspACI	CCGC	4 cut(s)	256, 280, 714, 756
BspANI	GGCC	3 cut(s)	457, 788, 798
BspCNI	CTCAG	2 cut(s)	7, 667
BspFNI	CGCG	1 cut(s)	183
BspLI	GGNNCC	5 cut(s)	157, 413, 754, 797, 798
BspPI	GGATC	1 cut(s)	713
BspT107I	GGYRCC	1 cut(s)	155
BspTI	CTTAAG	1 cut(s)	320
BsrFI	RCCGGY	2 cut(s)	93, 414
BsrI	ACTGG	1 cut(s)	296
BssAI	RCCGGY	2 cut(s)	93, 414
BssECI	CCNNGG	2 cut(s)	458, 780
BssMI	GATC	3 cut(s)	250, 601, 718
BssNI	GRCGYC	2 cut(s)	91, 427
Bst2UI	CCWGG	1 cut(s)	459
BstACI	GRCGYC	2 cut(s)	91, 427
BstAFI	CTTAAG	1 cut(s)	320
BstAPI	GCANNNNNTGC	1 cut(s)	331
BstC8I	GCNNGC	2 cut(s)	95, 176
BstDEI	CTNAG	4 cut(s)	15, 115, 654, 804
BstF5I	GGATG	2 cut(s)	243, 677
BstFNI	CGCG	1 cut(s)	183
BstH2I	RGCGCY	1 cut(s)	364
BstHHI	GCGC	1 cut(s)	363
BstKTI	GATC	3 cut(s)	253, 604, 721
BstMBI	GATC	3 cut(s)	250, 601, 718
BstMWI	GCNNNNNNNGC	2 cut(s)	180, 331
BstNI	CCWGG	1 cut(s)	459
BstSCI	CCNGG	1 cut(s)	457
BstSLI	GKGCMC	2 cut(s)	160, 800
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	1 cut(s)	350
BstV2I	GAAGAC	1 cut(s)	738
BstX2I	RGATCY	1 cut(s)	718
BstYI	RGATCY	1 cut(s)	718
BsuRI	GGCC	3 cut(s)	457, 788, 798
BtsCI	GGATG	2 cut(s)	243, 677
Cac8I	GCNNGC	2 cut(s)	95, 176
CfoI	GCGC	1 cut(s)	363
Cfr10I	RCCGGY	2 cut(s)	93, 414
Cfr13I	GGNCC	4 cut(s)	752, 787, 796, 797
CseI	GACGC	2 cut(s)	99, 416
Csp6I	GTAC	1 cut(s)	291
CspAI	ACCGGT	1 cut(s)	414
CviAII	CATG	5 cut(s)	170, 276, 285, 613, 642
CviQI	GTAC	1 cut(s)	291
DdeI	CTNAG	4 cut(s)	15, 115, 654, 804
DpnI	GATC	3 cut(s)	252, 603, 720
DpnII	GATC	3 cut(s)	250, 601, 718
DrdI	GACNNNNNNGTC	1 cut(s)	564
DseDI	GACNNNNNNGTC	1 cut(s)	564
Eco24I	GRGCYC	2 cut(s)	134, 800
Eco47I	GGWCC	1 cut(s)	752
Eco47III	AGCGCT	1 cut(s)	362
Eco57I	CTGAAG	2 cut(s)	411, 708
EcoO109I	RGGNCCY	2 cut(s)	752, 796
EcoRII	CCWGG	1 cut(s)	457
EcoT38I	GRGCYC	2 cut(s)	134, 800
FaeI	CATG	5 cut(s)	173, 279, 288, 616, 645
FalI	AAGNNNNNCTT	2 cut(s)	723, 755
FatI	CATG	5 cut(s)	169, 275, 284, 612, 641
FauI	CCCGC	2 cut(s)	249, 763
Fnu4HI	GCNGC	2 cut(s)	364, 714
FokI	GGATG	2 cut(s)	250, 664
FriOI	GRGCYC	2 cut(s)	134, 800
Fsp4HI	GCNGC	2 cut(s)	364, 714
FspBI	CTAG	1 cut(s)	269
GlaI	GCGC	1 cut(s)	362
GluI	GCNGC	2 cut(s)	364, 714
GsaI	CCCAGC	1 cut(s)	370
GsuI	CTGGAG	1 cut(s)	279
HaeII	RGCGCY	1 cut(s)	364
HaeIII	GGCC	3 cut(s)	457, 788, 798
HapII	CCGG	2 cut(s)	94, 415
HgaI	GACGC	2 cut(s)	99, 416
HhaI	GCGC	1 cut(s)	363
Hin1I	GRCGYC	2 cut(s)	91, 427
Hin1II	CATG	5 cut(s)	173, 279, 288, 616, 645
Hin6I	GCGC	1 cut(s)	361
HinP1I	GCGC	1 cut(s)	361
HinfI	GANTC	4 cut(s)	26, 262, 340, 463
HpaII	CCGG	2 cut(s)	94, 415
Hpy188I	TCNGA	4 cut(s)	16, 391, 411, 781
Hpy188III	TCNNGA	3 cut(s)	337, 488, 608
Hpy99I	CGWCG	2 cut(s)	93, 432
HpyAV	CCTTC	2 cut(s)	386, 732
HpyCH4V	TGCA	2 cut(s)	85, 590
HpyF10VI	GCNNNNNNNGC	2 cut(s)	180, 331
HpyF3I	CTNAG	4 cut(s)	15, 115, 654, 804
Hsp92I	GRCGYC	2 cut(s)	91, 427
Hsp92II	CATG	5 cut(s)	173, 279, 288, 616, 645
HspAI	GCGC	1 cut(s)	361
KroI	GCCGGC	1 cut(s)	93
KroNI	GCCGGC	1 cut(s)	95
Kzo9I	GATC	3 cut(s)	250, 601, 718
LmnI	GCTCC	1 cut(s)	142
Lsp1109I	GCAGC	1 cut(s)	350
LweI	GCATC	1 cut(s)	94
MaeI	CTAG	1 cut(s)	269
MaeIII	GTNAC	1 cut(s)	57
MalI	GATC	3 cut(s)	252, 603, 720
MboI	GATC	3 cut(s)	250, 601, 718
MboII	GAAGA	7 cut(s)	21, 372, 435, 438, 565, 596, 743
MfeI	CAATTG	1 cut(s)	708
MflI	RGATCY	1 cut(s)	718
MhlI	GDGCHC	4 cut(s)	134, 160, 336, 800
MluCI	AATT	5 cut(s)	470, 507, 544, 708, 763
MmeI	TCCRAC	1 cut(s)	215
MnlI	CCTC	7 cut(s)	189, 276, 298, 364, 531, 663, 775
MroNI	GCCGGC	1 cut(s)	93
MseI	TTAA	3 cut(s)	321, 356, 506
MslI	CAYNNNNRTG	1 cut(s)	682
MspCI	CTTAAG	1 cut(s)	320
MspI	CCGG	2 cut(s)	94, 415
MspR9I	CCNGG	1 cut(s)	459
MunI	CAATTG	1 cut(s)	708
MvaI	CCWGG	1 cut(s)	459
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	2 cut(s)	180, 331
NaeI	GCCGGC	1 cut(s)	95
NdeII	GATC	3 cut(s)	250, 601, 718
NgoMIV	GCCGGC	1 cut(s)	93
NlaIII	CATG	5 cut(s)	173, 279, 288, 616, 645
NlaIV	GGNNCC	5 cut(s)	157, 413, 754, 797, 798
NmuCI	GTSAC	1 cut(s)	57
PdiI	GCCGGC	1 cut(s)	95
PfeI	GAWTC	4 cut(s)	26, 262, 340, 463
PinAI	ACCGGT	1 cut(s)	414
PkrI	GCNGC	2 cut(s)	365, 715
PpuMI	RGGWCCY	1 cut(s)	752
Psp5II	RGGWCCY	1 cut(s)	752
Psp6I	CCWGG	1 cut(s)	457
PspFI	CCCAGC	1 cut(s)	366
PspGI	CCWGG	1 cut(s)	457
PspN4I	GGNNCC	5 cut(s)	157, 413, 754, 797, 798
PspOMI	GGGCCC	1 cut(s)	796
PspPI	GGNCC	4 cut(s)	752, 787, 796, 797
PspPPI	RGGWCCY	1 cut(s)	752
PsuI	RGATCY	1 cut(s)	718
RsaI	GTAC	1 cut(s)	292
RsaNI	GTAC	1 cut(s)	291
RseI	CAYNNNNRTG	1 cut(s)	682
SaqAI	TTAA	3 cut(s)	321, 356, 506
SatI	GCNGC	2 cut(s)	364, 714
Sau3AI	GATC	3 cut(s)	250, 601, 718
Sau96I	GGNCC	4 cut(s)	752, 787, 796, 797
ScrFI	CCNGG	1 cut(s)	459
SduI	GDGCHC	4 cut(s)	134, 160, 336, 800
SetI	ASST	7 cut(s)	113, 121, 375, 397, 660, 786, 805
SfaNI	GCATC	1 cut(s)	94
SinI	GGWCC	1 cut(s)	752
SmiMI	CAYNNNNRTG	1 cut(s)	682
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
Sse9I	AATT	5 cut(s)	470, 507, 544, 708, 763
SsiI	CCGC	4 cut(s)	256, 280, 714, 756
SspMI	CTAG	1 cut(s)	269
StyD4I	CCNGG	1 cut(s)	457
TaqI	TCGA	3 cut(s)	88, 499, 620
TasI	AATT	5 cut(s)	470, 507, 544, 708, 763
TatI	WGTACW	1 cut(s)	290
TauI	GCSGC	1 cut(s)	716
TfiI	GAWTC	4 cut(s)	26, 262, 340, 463
Tru1I	TTAA	3 cut(s)	321, 356, 506
Tru9I	TTAA	3 cut(s)	321, 356, 506
TseFI	GTSAC	1 cut(s)	57
TseI	GCWGC	1 cut(s)	363
Tsp45I	GTSAC	1 cut(s)	57
TspDTI	ATGAA	6 cut(s)	17, 133, 158, 390, 394, 630
TspGWI	ACGGA	1 cut(s)	572
Vha464I	CTTAAG	1 cut(s)	320
VpaK11BI	GGWCC	1 cut(s)	752
XspI	CTAG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.