Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005389.1

Orthogroup ID

OG0008407

Physical Location & Seq

Genomic Coordinates Reverse (-)

66740 .. 67087

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005389.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atggcagccatggaaggcgcgctacagaaccaacctccacagcccctccaacagcagcaaccacaacccgcggcgacggagagactaaacgacgccgtacagcagcagctaaacctcaagtccatcaaggatcgagccaccaacctgttcaaaggcatcacccgcattctcaaagacctcgatggccacgcttgcaccaacaccactcccaaatggcaggacctcttgagccaatactccatggtcaacctggagctcttcaacatcatcgacgaaatcaaaaaggtctccaaggccttcttggtcaggcgttgcttgagcctaaataagtcaggagttgtgcgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

115

Amino Acids

12.97

Weight (kDa)

9.51

Isoelectric Point (pI)

53.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008407)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03070
fragaria_vesca	FvH4_4g04880 FvH4_4g04880 FvH4_4g04880 FvH4_4g04880
malus_domestica	MD16G1227300.v1.1
prunus_persica	Prupe.1G049400_v2.0.a1 Prupe.1G049400_v2.0.a1
pyrus_communis	pycom16g19050
rosa_chinensis	RchiOBHm_Chr4g0395701 RchiOBHm_Chr4g0395721
rosa_laevigata	RLG00000009603
rosa_multiflora	Rmu_sc0005389.1_g000008 Rmu_sc0005389.1_g000017
rosa_roxburghii	Rroxscaffold_5G00340570
rosa_rugosa	Rorug03G0354600 Rorug03G0354700 Rorug03G0354800
rosa_samantha	Rh4BG061100 Rh4CG067300 Rh4DG056500
rosa_wichuraiana	Rw4G004910 Rw4G004950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	20, 71
AciI	CCGC	3 cut(s)	69, 71, 163
AclWI	GGATC	1 cut(s)	138
AcoI	YGGCCR	1 cut(s)	184
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	1 cut(s)	99
AgsI	TTSAA	2 cut(s)	151, 262
AjnI	CCWGG	1 cut(s)	249
AluBI	AGCT	2 cut(s)	109, 256
AluI	AGCT	2 cut(s)	109, 256
Alw21I	GWGCWC	1 cut(s)	258
Alw26I	GTCTC	2 cut(s)	76, 292
AlwI	GGATC	1 cut(s)	138
AoxI	GGCC	2 cut(s)	184, 294
ApeKI	GCWGC	4 cut(s)	5, 55, 103, 106
AspLEI	GCGC	2 cut(s)	20, 22
AspS9I	GGNCC	1 cut(s)	220
AsuHPI	GGTGA	1 cut(s)	151
AvaII	GGWCC	1 cut(s)	220
BalI	TGGCCA	1 cut(s)	186
BanII	GRGCYC	1 cut(s)	258
BarI	GAAGNNNNNNTAC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	4 cut(s)	17, 67, 115, 118
BccI	CCATC	2 cut(s)	131, 176
BceAI	ACGGC	1 cut(s)	80
BciT130I	CCWGG	1 cut(s)	251
BcoDI	GTCTC	2 cut(s)	76, 292
BfmI	CTRYAG	1 cut(s)	23
BisI	GCNGC	5 cut(s)	6, 56, 72, 104, 107
BlsI	GCNGC	5 cut(s)	7, 57, 73, 105, 108
Bme1390I	CCNGG	1 cut(s)	251
Bme18I	GGWCC	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	220
BmrFI	CCNGG	1 cut(s)	251
BmsI	GCATC	1 cut(s)	165
BpmI	CTGGAG	1 cut(s)	272
BpuEI	CTTGAG	3 cut(s)	101, 247, 337
BsaHI	GRCGYC	1 cut(s)	93
BsaI	GGTCTC	1 cut(s)	292
BsaJI	CCNNGG	4 cut(s)	9, 69, 240, 291
BsaXI	ACNNNNNCTCC	2 cut(s)	30, 60
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	4 cut(s)	9, 69, 240, 291
BsePI	GCGCGC	1 cut(s)	18
BseXI	GCAGC	4 cut(s)	17, 67, 115, 118
Bsh1236I	CGCG	2 cut(s)	20, 71
BshFI	GGCC	2 cut(s)	186, 296
BsiHKAI	GWGCWC	1 cut(s)	258
BsmAI	GTCTC	2 cut(s)	76, 292
BsmI	GAATGC	1 cut(s)	165
BsnI	GGCC	2 cut(s)	186, 296
Bso31I	GGTCTC	1 cut(s)	292
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp143I	GATC	1 cut(s)	130
Bsp19I	CCATGG	2 cut(s)	9, 240
BspACI	CCGC	3 cut(s)	69, 71, 163
BspANI	GGCC	2 cut(s)	186, 296
BspFNI	CGCG	2 cut(s)	20, 71
BspPI	GGATC	1 cut(s)	138
BspQI	GCTCTTC	1 cut(s)	263
BspTNI	GGTCTC	1 cut(s)	292
BssECI	CCNNGG	4 cut(s)	9, 69, 240, 291
BssHII	GCGCGC	1 cut(s)	18
BssMI	GATC	1 cut(s)	130
BssNI	GRCGYC	1 cut(s)	93
BssT1I	CCWWGG	3 cut(s)	9, 240, 291
Bst2UI	CCWGG	1 cut(s)	251
Bst6I	CTCTTC	1 cut(s)	263
BstACI	GRCGYC	1 cut(s)	93
BstC8I	GCNNGC	2 cut(s)	20, 193
BstDSI	CCRYGG	3 cut(s)	9, 69, 240
BstFNI	CGCG	2 cut(s)	20, 71
BstHHI	GCGC	2 cut(s)	20, 22
BstKTI	GATC	1 cut(s)	133
BstMAI	GTCTC	2 cut(s)	76, 292
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	2 cut(s)	162, 192
BstNI	CCWGG	1 cut(s)	251
BstSCI	CCNGG	1 cut(s)	249
BstSFI	CTRYAG	1 cut(s)	23
BstUI	CGCG	2 cut(s)	20, 71
BstV1I	GCAGC	4 cut(s)	17, 67, 115, 118
BsuRI	GGCC	2 cut(s)	186, 296
BtgI	CCRYGG	3 cut(s)	9, 69, 240
Cac8I	GCNNGC	2 cut(s)	20, 193
CfoI	GCGC	2 cut(s)	20, 22
Cfr13I	GGNCC	1 cut(s)	220
Cfr42I	CCGCGG	1 cut(s)	72
CseI	GACGC	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	98
CviAII	CATG	2 cut(s)	10, 241
CviJI	RGCY	9 cut(s)	8, 43, 109, 137, 186, 231, 256, 296, 321
CviKI_1	RGCY	9 cut(s)	8, 43, 109, 137, 186, 231, 256, 296, 321
CviQI	GTAC	1 cut(s)	98
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
EaeI	YGGCCR	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	263
EarI	CTCTTC	1 cut(s)	263
Ecl136II	GAGCTC	1 cut(s)	256
Eco130I	CCWWGG	3 cut(s)	9, 240, 291
Eco147I	AGGCCT	1 cut(s)	296
Eco24I	GRGCYC	1 cut(s)	258
Eco31I	GGTCTC	1 cut(s)	292
Eco47I	GGWCC	1 cut(s)	220
Eco53kI	GAGCTC	1 cut(s)	256
EcoICRI	GAGCTC	1 cut(s)	256
EcoO109I	RGGNCCY	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	249
EcoT14I	CCWWGG	3 cut(s)	9, 240, 291
EcoT38I	GRGCYC	1 cut(s)	258
ErhI	CCWWGG	3 cut(s)	9, 240, 291
FaeI	CATG	2 cut(s)	13, 244
FaiI	YATR	2 cut(s)	11, 242
FalI	AAGNNNNNCTT	2 cut(s)	284, 316
FatI	CATG	2 cut(s)	9, 240
FauI	CCCGC	2 cut(s)	76, 170
Fnu4HI	GCNGC	5 cut(s)	6, 56, 72, 104, 107
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	5 cut(s)	6, 56, 72, 104, 107
GlaI	GCGC	2 cut(s)	19, 21
GluI	GCNGC	5 cut(s)	6, 56, 72, 104, 107
GsuI	CTGGAG	1 cut(s)	272
HaeIII	GGCC	2 cut(s)	186, 296
HgaI	GACGC	1 cut(s)	101
HhaI	GCGC	2 cut(s)	20, 22
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	2 cut(s)	13, 244
Hin6I	GCGC	2 cut(s)	18, 20
HinP1I	GCGC	2 cut(s)	18, 20
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188III	TCNNGA	2 cut(s)	226, 333
Hpy8I	GTNNAC	1 cut(s)	247
Hpy99I	CGWCG	3 cut(s)	79, 95, 275
HpyAV	CCTTC	2 cut(s)	8, 307
HpyCH4V	TGCA	1 cut(s)	195
HpyF10VI	GCNNNNNNNGC	2 cut(s)	162, 192
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	2 cut(s)	13, 244
HspAI	GCGC	2 cut(s)	18, 20
KspI	CCGCGG	1 cut(s)	72
Kzo9I	GATC	1 cut(s)	130
LguI	GCTCTTC	1 cut(s)	263
LmnI	GCTCC	1 cut(s)	253
LpnPI	CCDG	6 cut(s)	158, 203, 236, 263, 292, 318
Lsp1109I	GCAGC	4 cut(s)	17, 67, 115, 118
LweI	GCATC	1 cut(s)	165
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	1 cut(s)	250
MhlI	GDGCHC	1 cut(s)	258
MlsI	TGGCCA	1 cut(s)	186
MluNI	TGGCCA	1 cut(s)	186
MmeI	TCCRAC	1 cut(s)	73
MnlI	CCTC	5 cut(s)	45, 56, 125, 188, 233
Mox20I	TGGCCA	1 cut(s)	186
MscI	TGGCCA	1 cut(s)	186
Msp20I	TGGCCA	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	71
MspR9I	CCNGG	1 cut(s)	251
Mva1269I	GAATGC	1 cut(s)	165
MvaI	CCWGG	1 cut(s)	251
MvnI	CGCG	2 cut(s)	20, 71
MwoI	GCNNNNNNNGC	2 cut(s)	162, 192
NcoI	CCATGG	2 cut(s)	9, 240
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	2 cut(s)	13, 244
PauI	GCGCGC	1 cut(s)	18
PceI	AGGCCT	1 cut(s)	296
PciSI	GCTCTTC	1 cut(s)	263
PctI	GAATGC	1 cut(s)	165
PkrI	GCNGC	5 cut(s)	7, 57, 73, 105, 108
PpuMI	RGGWCCY	1 cut(s)	220
Psp124BI	GAGCTC	1 cut(s)	258
Psp5II	RGGWCCY	1 cut(s)	220
Psp6I	CCWGG	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	249
PspPI	GGNCC	1 cut(s)	220
PspPPI	RGGWCCY	1 cut(s)	220
PteI	GCGCGC	1 cut(s)	18
RsaI	GTAC	1 cut(s)	99
RsaNI	GTAC	1 cut(s)	98
SacI	GAGCTC	1 cut(s)	258
SacII	CCGCGG	1 cut(s)	72
SapI	GCTCTTC	1 cut(s)	263
SatI	GCNGC	5 cut(s)	6, 56, 72, 104, 107
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	1 cut(s)	220
ScrFI	CCNGG	1 cut(s)	251
SduI	GDGCHC	1 cut(s)	258
SetI	ASST	9 cut(s)	37, 111, 117, 147, 180, 225, 252, 258, 288
SfaNI	GCATC	1 cut(s)	165
SfcI	CTRYAG	1 cut(s)	23
Sfr303I	CCGCGG	1 cut(s)	72
SgrBI	CCGCGG	1 cut(s)	72
SinI	GGWCC	1 cut(s)	220
SmlI	CTYRAG	3 cut(s)	116, 226, 316
SmoI	CTYRAG	3 cut(s)	116, 226, 316
SseBI	AGGCCT	1 cut(s)	296
SsiI	CCGC	3 cut(s)	69, 71, 163
SstI	GAGCTC	1 cut(s)	258
StuI	AGGCCT	1 cut(s)	296
StyD4I	CCNGG	1 cut(s)	249
StyI	CCWWGG	3 cut(s)	9, 240, 291
TaqI	TCGA	3 cut(s)	133, 180, 270
TauI	GCSGC	1 cut(s)	74
TseI	GCWGC	4 cut(s)	5, 55, 103, 106
TspGWI	ACGGA	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	220
XcmI	CCANNNNNNNNNTGG	2 cut(s)	247, 298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.