Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008407

Physical Location & Seq

Genomic Coordinates Forward (+)

11568115 .. 11572305

Gene Structure 4191 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36815

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGGTCAACCTAGAGCTCTTCAACATCGTCGACGAAATCAAAAAGGTCTCCAAGGCCTTCGTGGTCTATCCCAAGAATGTGAACGCCGAGAACGCCGTGGTGTTGCCGGTGATGCTCTCGTCGAAGCTCTTGCCGGAGATGGAGGTCGAGGACAACGCCAAGAGAGAGCAGCTGCTTCTAGGGTTGCAGAGCCTCCCAATCTCGACCCAAATTGACAAGCTAAAGGCTAGGATTGATATGATTGGAGCTGCTTGTGAGAGTGCCGAGAAAGTATTGGCAGACACTCGAAAAGCCTACTGCATTGGAACTCGGCAAGGCATTCCGGTTGTTCCTACTCTGGACAAAGCTCAGGCAGCTAAAATTCAAGAGCAGGAGAATCTACTCCGGGCTGCTGTTAATTCTGGGGAAGCTTTACGGTTGCCACCAGACCAAAGGCAGAATCCACCTGCACTTCCACTGCATCTGGTAGATGTGCTCGGTGGCGGTGATGGTGGTGCGCAAGCATTTCCTGAAGCGTCTGGTATGTACTCAAAGAATACTCCTGTATCATCAAGTAACTTGTCTGGCCAGAGCCCGTTGATGCAGGTTCCCGGATCACAACTTATGGGAAGATCAGCTGCATCTCCTGGTGGCACAAGTATTACAAACTTCGATAACACAACAACATCTCCATTACCATATGCCAACTCTCCAAGGTCTGGTACAAACATTATGAATACGCCATCTCCTCAACAACAAAACCAGCAACAGAAGCAGCAACAACAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGAAGATGATGCAATTACCTCCTCAACAGCAACTCCTGGCTCAGCAACAATTTAGGCAATCGGCAATGCAAGGACTTGGACAAAACCCACTGCATCAGCTGCATGATTTGCAGGGACAGGCTCAGCAAAAGTTCCAGTCGTTACATGGACAACATCAAATGCAATTTTCTCCATCAATGGGTCACCAGCAATTTCAGGGTAGGCAGTTGCCTTCTGGACATGTTCCACATGGCATTGGTCAAAACCAACTTAACCAAGGAAGTCAAATGAATCGTCATCTTAGTCAGTTTTCTGGTGCTGCTAATAGTGCATTGTTTAATGCTGCTCAGACAACACCAAATCAAATGATACCAAACATGTCAGCAACAATGTCCTCACAATCACTTCTGCCGCGAATGCAGTTTGAAATGCCTGGCAACAATCCCCAGAGAAGTCACGCTTCCCAGATTTTGAGCGACCAAATGTTTAATATGGGAGCCACAAATACTGGTGGTATGATGCCTTTACCGCAGCAGCAACAGCAACATGGTTCACAAGGTGCATTTGGTAACATGGCGCAAAATGCTCAGAATCTACAGTCTAATATGGTAGCACTTCAGGGCACACCGCAGAATCATCCCAATTTTAACCAACAGAGACAGCAAAACCAGCAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

483

Amino Acids

52.79

Weight (kDa)

9.2

Isoelectric Point (pI)

60.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008407)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03070
fragaria_vesca	FvH4_4g04880 FvH4_4g04880 FvH4_4g04880 FvH4_4g04880
malus_domestica	MD16G1227300.v1.1
prunus_persica	Prupe.1G049400_v2.0.a1 Prupe.1G049400_v2.0.a1
pyrus_communis	pycom16g19050
rosa_chinensis	RchiOBHm_Chr4g0395701 RchiOBHm_Chr4g0395721
rosa_laevigata	RLG00000009603
rosa_multiflora	Rmu_sc0005389.1_g000008 Rmu_sc0005389.1_g000017
rosa_roxburghii	Rroxscaffold_5G00340570
rosa_rugosa	Rorug03G0354600 Rorug03G0354700 Rorug03G0354800
rosa_samantha	Rh4BG061100 Rh4CG067300 Rh4DG056500
rosa_wichuraiana	Rw4G004910 Rw4G004950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	454
Acc16I	TGCGCA	1 cut(s)	498
Acc36I	ACCTGC	2 cut(s)	454, 574
AccB7I	CCANNNNNTGG	1 cut(s)	698
AccI	GTMKAC	1 cut(s)	30
AccII	CGCG	1 cut(s)	1186
AciI	CCGC	4 cut(s)	483, 1184, 1301, 1400
AclWI	GGATC	1 cut(s)	601
AcoI	YGGCCR	1 cut(s)	565
AcsI	RAATTY	1 cut(s)	360
AcuI	CTGAAG	2 cut(s)	531, 1373
AdeI	CACNNNGTG	1 cut(s)	1331
AfaI	GTAC	2 cut(s)	527, 703
AfiI	CCNNNNNNNGG	2 cut(s)	698, 971
AflIII	ACRYGT	2 cut(s)	1012, 1149
AgsI	TTSAA	3 cut(s)	22, 365, 1199
AjnI	CCWGG	3 cut(s)	625, 828, 1204
Alw21I	GWGCWC	2 cut(s)	18, 477
Alw26I	GTCTC	2 cut(s)	52, 1423
AlwI	GGATC	1 cut(s)	601
AoxI	GGCC	2 cut(s)	54, 565
ApoI	RAATTY	1 cut(s)	360
ArsI	GACNNNNNNTTYG	2 cut(s)	1051, 1083
AspLEI	GCGC	2 cut(s)	499, 1351
AsuC2I	CCSGG	2 cut(s)	386, 591
AsuHPI	GGTGA	3 cut(s)	121, 497, 968
BaeGI	GKGCMC	1 cut(s)	1397
BaeI	ACNNNNGTAYC	2 cut(s)	528, 561
BalI	TGGCCA	1 cut(s)	567
BanII	GRGCYC	2 cut(s)	18, 575
Bbv12I	GWGCWC	2 cut(s)	18, 477
BccI	CCATC	4 cut(s)	133, 482, 730, 973
BceAI	ACGGC	1 cut(s)	80
BcgI	CGANNNNNNTGC	2 cut(s)	112, 146
BciT130I	CCWGG	3 cut(s)	627, 830, 1206
BcnI	CCSGG	2 cut(s)	386, 591
BcoDI	GTCTC	2 cut(s)	52, 1423
BfaI	CTAG	3 cut(s)	11, 179, 228
BfmI	CTRYAG	1 cut(s)	1367
BfuAI	ACCTGC	2 cut(s)	454, 574
BlpI	GCTNAGC	2 cut(s)	834, 915
Bme1390I	CCNGG	5 cut(s)	386, 591, 627, 830, 1206
BmiI	GGNNCC	2 cut(s)	588, 1270
BmrFI	CCNGG	5 cut(s)	386, 591, 627, 830, 1206
BmsI	GCATC	7 cut(s)	102, 469, 570, 629, 792, 895, 1281
Bpu10I	CCTNAGC	1 cut(s)	348
Bpu1102I	GCTNAGC	2 cut(s)	834, 915
BpuMI	CCSGG	2 cut(s)	386, 591
BsaI	GGTCTC	1 cut(s)	52
BsaJI	CCNNGG	4 cut(s)	51, 96, 692, 1048
BsaWI	WCCGGW	1 cut(s)	322
BsaXI	ACNNNNNCTCC	6 cut(s)	652, 682, 709, 739, 810, 840
Bsc4I	CCNNNNNNNGG	2 cut(s)	698, 971
Bse118I	RCCGGY	1 cut(s)	106
Bse1I	ACTGG	2 cut(s)	928, 1285
Bse3DI	GCAATG	1 cut(s)	864
BseBI	CCWGG	3 cut(s)	627, 830, 1206
BseDI	CCNNGG	4 cut(s)	51, 96, 692, 1048
BseGI	GGATG	1 cut(s)	1408
BseLI	CCNNNNNNNGG	2 cut(s)	698, 971
BseMI	GCAATG	1 cut(s)	864
BseMII	CTCAG	5 cut(s)	362, 848, 929, 1133, 1373
BseNI	ACTGG	2 cut(s)	928, 1285
BseRI	GAGGAG	2 cut(s)	717, 804
BseSI	GKGCMC	1 cut(s)	1397
BsgI	GTGCAG	1 cut(s)	432
Bsh1236I	CGCG	1 cut(s)	1186
BshFI	GGCC	2 cut(s)	56, 567
BsiHKAI	GWGCWC	2 cut(s)	18, 477
BsiSI	CCGG	5 cut(s)	107, 134, 323, 385, 591
BslFI	GGGAC	1 cut(s)	921
BslI	CCNNNNNNNGG	2 cut(s)	698, 971
BsmAI	GTCTC	2 cut(s)	52, 1423
BsmFI	GGGAC	1 cut(s)	921
BsmI	GAATGC	2 cut(s)	318, 1194
BsnI	GGCC	2 cut(s)	56, 567
Bso31I	GGTCTC	1 cut(s)	52
Bsp1286I	GDGCHC	4 cut(s)	18, 477, 575, 1397
Bsp143I	GATC	2 cut(s)	593, 611
Bsp1720I	GCTNAGC	2 cut(s)	834, 915
BspACI	CCGC	4 cut(s)	483, 1184, 1301, 1400
BspANI	GGCC	2 cut(s)	56, 567
BspCNI	CTCAG	5 cut(s)	361, 847, 928, 1132, 1372
BspFNI	CGCG	1 cut(s)	1186
BspLI	GGNNCC	2 cut(s)	588, 1270
BspMI	ACCTGC	2 cut(s)	454, 574
BspPI	GGATC	1 cut(s)	601
BspQI	GCTCTTC	1 cut(s)	23
BspTNI	GGTCTC	1 cut(s)	52
BsrDI	GCAATG	1 cut(s)	864
BsrFI	RCCGGY	1 cut(s)	106
BsrI	ACTGG	2 cut(s)	928, 1285
BssAI	RCCGGY	1 cut(s)	106
BssECI	CCNNGG	4 cut(s)	51, 96, 692, 1048
BssMI	GATC	2 cut(s)	593, 611
BssT1I	CCWWGG	3 cut(s)	51, 692, 1048
Bst2UI	CCWGG	3 cut(s)	627, 830, 1206
Bst4CI	ACNGT	2 cut(s)	417, 1371
Bst6I	CTCTTC	1 cut(s)	23
BstAPI	GCANNNNNTGC	2 cut(s)	892, 901
BstC8I	GCNNGC	1 cut(s)	501
BstDEI	CTNAG	6 cut(s)	348, 834, 915, 1073, 1119, 1359
BstDSI	CCRYGG	1 cut(s)	96
BstEII	GGTNACC	1 cut(s)	974
BstF5I	GGATG	1 cut(s)	1408
BstFNI	CGCG	1 cut(s)	1186
BstHHI	GCGC	2 cut(s)	499, 1351
BstKTI	GATC	2 cut(s)	596, 614
BstMAI	GTCTC	2 cut(s)	52, 1423
BstMBI	GATC	2 cut(s)	593, 611
BstNI	CCWGG	3 cut(s)	627, 830, 1206
BstNSI	RCATGY	2 cut(s)	1016, 1153
BstPI	GGTNACC	1 cut(s)	974
BstSCI	CCNGG	5 cut(s)	384, 589, 625, 828, 1204
BstSFI	CTRYAG	1 cut(s)	1367
BstSLI	GKGCMC	1 cut(s)	1397
BstUI	CGCG	1 cut(s)	1186
BsuRI	GGCC	2 cut(s)	56, 567
BtgI	CCRYGG	1 cut(s)	96
BtsCI	GGATG	1 cut(s)	1408
BtsI	GCAGTG	2 cut(s)	455, 881
BtsIMutI	CAGTG	2 cut(s)	455, 881
BveI	ACCTGC	2 cut(s)	454, 574
Cac8I	GCNNGC	1 cut(s)	501
CfoI	GCGC	2 cut(s)	499, 1351
Cfr10I	RCCGGY	1 cut(s)	106
CseI	GACGC	1 cut(s)	504
Csp6I	GTAC	2 cut(s)	526, 702
CviAII	CATG	7 cut(s)	896, 938, 1013, 1022, 1150, 1319, 1345
CviQI	GTAC	2 cut(s)	526, 702
DdeI	CTNAG	6 cut(s)	348, 834, 915, 1073, 1119, 1359
DpnI	GATC	2 cut(s)	595, 613
DpnII	GATC	2 cut(s)	593, 611
DraIII	CACNNNGTG	1 cut(s)	1331
EaeI	YGGCCR	1 cut(s)	565
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
Ecl136II	GAGCTC	1 cut(s)	16
Eco130I	CCWWGG	3 cut(s)	51, 692, 1048
Eco147I	AGGCCT	1 cut(s)	56
Eco24I	GRGCYC	2 cut(s)	18, 575
Eco31I	GGTCTC	1 cut(s)	52
Eco53kI	GAGCTC	1 cut(s)	16
Eco57I	CTGAAG	2 cut(s)	531, 1373
Eco91I	GGTNACC	1 cut(s)	974
EcoICRI	GAGCTC	1 cut(s)	16
EcoO65I	GGTNACC	1 cut(s)	974
EcoRII	CCWGG	3 cut(s)	625, 828, 1204
EcoT14I	CCWWGG	3 cut(s)	51, 692, 1048
EcoT38I	GRGCYC	2 cut(s)	18, 575
ErhI	CCWWGG	3 cut(s)	51, 692, 1048
FaeI	CATG	7 cut(s)	899, 941, 1016, 1025, 1153, 1322, 1348
FalI	AAGNNNNNCTT	2 cut(s)	1216, 1248
FaqI	GGGAC	1 cut(s)	921
FatI	CATG	7 cut(s)	895, 937, 1012, 1021, 1149, 1318, 1344
FauNDI	CATATG	1 cut(s)	679
FblI	GTMKAC	1 cut(s)	30
FokI	GGATG	1 cut(s)	1395
FriOI	GRGCYC	2 cut(s)	18, 575
FspBI	CTAG	3 cut(s)	11, 179, 228
FspI	TGCGCA	1 cut(s)	498
GlaI	GCGC	2 cut(s)	498, 1350
HaeIII	GGCC	2 cut(s)	56, 567
HapII	CCGG	5 cut(s)	107, 134, 323, 385, 591
HgaI	GACGC	1 cut(s)	504
HhaI	GCGC	2 cut(s)	499, 1351
Hin1II	CATG	7 cut(s)	899, 941, 1016, 1025, 1153, 1322, 1348
Hin6I	GCGC	2 cut(s)	497, 1349
HinP1I	GCGC	2 cut(s)	497, 1349
HincII	GTYRAC	2 cut(s)	7, 31
HindII	GTYRAC	2 cut(s)	7, 31
HindIII	AAGCTT	1 cut(s)	408
HinfI	GANTC	5 cut(s)	376, 439, 1063, 1363, 1405
HpaII	CCGG	5 cut(s)	107, 134, 323, 385, 591
HphI	GGTGA	3 cut(s)	121, 497, 968
Hpy166II	GTNNAC	4 cut(s)	7, 31, 82, 1325
Hpy188I	TCNGA	2 cut(s)	1122, 1362
Hpy188III	TCNNGA	5 cut(s)	202, 338, 365, 509, 1008
Hpy8I	GTNNAC	4 cut(s)	7, 31, 82, 1325
Hpy99I	CGWCG	3 cut(s)	32, 35, 124
HpyAV	CCTTC	2 cut(s)	67, 1014
HpyCH4III	ACNGT	2 cut(s)	417, 1371
HpyF3I	CTNAG	6 cut(s)	348, 834, 915, 1073, 1119, 1359
Hsp92II	CATG	7 cut(s)	899, 941, 1016, 1025, 1153, 1322, 1348
HspAI	GCGC	2 cut(s)	497, 1349
Kzo9I	GATC	2 cut(s)	593, 611
LguI	GCTCTTC	1 cut(s)	23
LmnI	GCTCC	2 cut(s)	245, 1268
LweI	GCATC	7 cut(s)	102, 469, 570, 629, 792, 895, 1281
MaeI	CTAG	3 cut(s)	11, 179, 228
MaeIII	GTNAC	5 cut(s)	554, 933, 974, 1226, 1340
MalI	GATC	2 cut(s)	595, 613
MboI	GATC	2 cut(s)	593, 611
MboII	GAAGA	3 cut(s)	10, 621, 808
MhlI	GDGCHC	4 cut(s)	18, 477, 575, 1397
MlsI	TGGCCA	1 cut(s)	567
MluCI	AATT	8 cut(s)	210, 360, 397, 806, 842, 956, 983, 1414
MluNI	TGGCCA	1 cut(s)	567
MnlI	CCTC	7 cut(s)	136, 142, 203, 738, 822, 825, 1177
Mox20I	TGGCCA	1 cut(s)	567
MscI	TGGCCA	1 cut(s)	567
MseI	TTAA	5 cut(s)	396, 1044, 1110, 1260, 1419
Msp20I	TGGCCA	1 cut(s)	567
MspA1I	CMGCKG	3 cut(s)	172, 617, 892
MspI	CCGG	5 cut(s)	107, 134, 323, 385, 591
MspR9I	CCNGG	5 cut(s)	386, 591, 627, 830, 1206
Mva1269I	GAATGC	2 cut(s)	318, 1194
MvaI	CCWGG	3 cut(s)	627, 830, 1206
MvnI	CGCG	1 cut(s)	1186
NciI	CCSGG	2 cut(s)	386, 591
NdeI	CATATG	1 cut(s)	679
NdeII	GATC	2 cut(s)	593, 611
NlaIII	CATG	7 cut(s)	899, 941, 1016, 1025, 1153, 1322, 1348
NlaIV	GGNNCC	2 cut(s)	588, 1270
NmeAIII	GCCGAG	3 cut(s)	112, 289, 289
NmuCI	GTSAC	2 cut(s)	974, 1226
NsbI	TGCGCA	1 cut(s)	498
NspI	RCATGY	2 cut(s)	1016, 1153
PaqCI	CACCTGC	1 cut(s)	454
PceI	AGGCCT	1 cut(s)	56
PciI	ACATGT	2 cut(s)	1012, 1149
PciSI	GCTCTTC	1 cut(s)	23
PctI	GAATGC	2 cut(s)	318, 1194
PfeI	GAWTC	5 cut(s)	376, 439, 1063, 1363, 1405
PflMI	CCANNNNNTGG	1 cut(s)	698
PfoI	TCCNGGA	1 cut(s)	589
PscI	ACATGT	2 cut(s)	1012, 1149
Psp124BI	GAGCTC	1 cut(s)	18
Psp6I	CCWGG	3 cut(s)	625, 828, 1204
PspEI	GGTNACC	1 cut(s)	974
PspGI	CCWGG	3 cut(s)	625, 828, 1204
PspN4I	GGNNCC	2 cut(s)	588, 1270
PvuII	CAGCTG	3 cut(s)	172, 617, 892
RsaI	GTAC	2 cut(s)	527, 703
RsaNI	GTAC	2 cut(s)	526, 702
SacI	GAGCTC	1 cut(s)	18
SalI	GTCGAC	1 cut(s)	29
SapI	GCTCTTC	1 cut(s)	23
SaqAI	TTAA	5 cut(s)	396, 1044, 1110, 1260, 1419
Sau3AI	GATC	2 cut(s)	593, 611
ScrFI	CCNGG	5 cut(s)	386, 591, 627, 830, 1206
SduI	GDGCHC	4 cut(s)	18, 477, 575, 1397
SfaNI	GCATC	7 cut(s)	102, 469, 570, 629, 792, 895, 1281
SfcI	CTRYAG	1 cut(s)	1367
SgrDI	CGTCGACG	1 cut(s)	29
Sse9I	AATT	8 cut(s)	210, 360, 397, 806, 842, 956, 983, 1414
SseBI	AGGCCT	1 cut(s)	56
SsiI	CCGC	4 cut(s)	483, 1184, 1301, 1400
SspMI	CTAG	3 cut(s)	11, 179, 228
SstI	GAGCTC	1 cut(s)	18
StuI	AGGCCT	1 cut(s)	56
StyD4I	CCNGG	5 cut(s)	384, 589, 625, 828, 1204
StyI	CCWWGG	3 cut(s)	51, 692, 1048
TaaI	ACNGT	2 cut(s)	417, 1371
TaqI	TCGA	6 cut(s)	30, 122, 147, 203, 286, 651
TasI	AATT	8 cut(s)	210, 360, 397, 806, 842, 956, 983, 1414
TatI	WGTACW	1 cut(s)	525
TauI	GCSGC	1 cut(s)	1186
TfiI	GAWTC	5 cut(s)	376, 439, 1063, 1363, 1405
Tru1I	TTAA	5 cut(s)	396, 1044, 1110, 1260, 1419
Tru9I	TTAA	5 cut(s)	396, 1044, 1110, 1260, 1419
TscAI	CASTG	2 cut(s)	462, 888
TseFI	GTSAC	2 cut(s)	974, 1226
Tsp45I	GTSAC	2 cut(s)	974, 1226
TspDTI	ATGAA	2 cut(s)	728, 1076
TspRI	CASTG	2 cut(s)	462, 888
Van91I	CCANNNNNTGG	1 cut(s)	698
XapI	RAATTY	1 cut(s)	360
XceI	RCATGY	2 cut(s)	1016, 1153
XcmI	CCANNNNNNNNNTGG	2 cut(s)	58, 935
XmiI	GTMKAC	1 cut(s)	30
XspI	CTAG	3 cut(s)	11, 179, 228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.