Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005389.1

Orthogroup ID

OG0008407

Physical Location & Seq

Genomic Coordinates Reverse (-)

45612 .. 46858

Gene Structure 1247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005389.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atggcagccatggaaggcgcgctacagaaccaacctccacagcccctccaacagcagcaaccgcaacccgcggcggtggagagactaaacgacgccgtacagcagcagctgaacctcaagtccgtcaaggaccgagccaccaacctgttcaaaaacatcacccgcattctcgaagacctcgacggccacgctcgcaccaacaccactcccaaatggcaggacctcctgagccagtactccatggtcaacctcgagctcttcaacatcgtcgacgaaatcaaaaaggtctccaaagccttcgtggtctatcccaagaatgtgaacgccgagaacgccgtggtgttgccggtgatgctttcgtcgaagctcttaccggagatggaggtcgaggacaacgccaagagagagcagttgcttctagggttgcagagcctcccaatctcgacccaaattgacaagctaaaggctaggattgatatgattggagctgcttgtgagagtgccgagaaagtattggcagacactcgaaaagcctactgcattggaactcggcaaggcattccggttgttcctactctggacaaagctcaggcggctaaaattcaagagcaggagaatctactccgggctgctgttaattatggggacgctttacggttgcctccagaccaaaggcagaatccacctgcacttccgatgcatctggtagatgtgctcggtagcggtgatggtggtgcacaagcatttcctgaagcgtctggtatgtactcaaagaatactcctgtatcatcaagtaacttgtctggccagagcccgttgatgcaggttagaattgttagatcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

281

Amino Acids

30.81

Weight (kDa)

6.76

Isoelectric Point (pI)

48.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008407)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03070
fragaria_vesca	FvH4_4g04880 FvH4_4g04880 FvH4_4g04880 FvH4_4g04880
malus_domestica	MD16G1227300.v1.1
prunus_persica	Prupe.1G049400_v2.0.a1 Prupe.1G049400_v2.0.a1
pyrus_communis	pycom16g19050
rosa_chinensis	RchiOBHm_Chr4g0395701 RchiOBHm_Chr4g0395721
rosa_laevigata	RLG00000009603
rosa_multiflora	Rmu_sc0005389.1_g000008 Rmu_sc0005389.1_g000017
rosa_roxburghii	Rroxscaffold_5G00340570
rosa_rugosa	Rorug03G0354600 Rorug03G0354700 Rorug03G0354800
rosa_samantha	Rh4BG061100 Rh4CG067300 Rh4DG056500
rosa_wichuraiana	Rw4G004910 Rw4G004950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	694
Acc36I	ACCTGC	2 cut(s)	694, 814
AccI	GTMKAC	1 cut(s)	270
AccII	CGCG	2 cut(s)	20, 71
AciI	CCGC	7 cut(s)	62, 69, 71, 74, 163, 593, 723
AcoI	YGGCCR	2 cut(s)	184, 805
AcsI	RAATTY	1 cut(s)	600
AcuI	CTGAAG	1 cut(s)	771
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	3 cut(s)	99, 236, 767
AgsI	TTSAA	3 cut(s)	151, 262, 605
AloI	GAACNNNNNNTCC	2 cut(s)	104, 136
AluBI	AGCT	6 cut(s)	109, 256, 367, 460, 488, 587
AluI	AGCT	6 cut(s)	109, 256, 367, 460, 488, 587
Alw21I	GWGCWC	3 cut(s)	258, 717, 739
Alw26I	GTCTC	2 cut(s)	76, 292
Alw44I	GTGCAC	1 cut(s)	735
AlwNI	CAGNNNCTG	1 cut(s)	109
Ama87I	CYCGRG	1 cut(s)	251
AoxI	GGCC	2 cut(s)	184, 805
ApaLI	GTGCAC	1 cut(s)	735
ApeKI	GCWGC	6 cut(s)	5, 55, 103, 106, 488, 629
ApoI	RAATTY	1 cut(s)	600
AspLEI	GCGC	2 cut(s)	20, 22
AspS9I	GGNCC	2 cut(s)	130, 220
AsuC2I	CCSGG	1 cut(s)	626
AsuHPI	GGTGA	3 cut(s)	151, 361, 737
AvaI	CYCGRG	1 cut(s)	251
AvaII	GGWCC	2 cut(s)	130, 220
BaeGI	GKGCMC	1 cut(s)	739
BaeI	ACNNNNGTAYC	2 cut(s)	768, 801
BalI	TGGCCA	1 cut(s)	807
BanII	GRGCYC	2 cut(s)	258, 815
BarI	GAAGNNNNNNTAC	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	180
Bbv12I	GWGCWC	3 cut(s)	258, 717, 739
BbvI	GCAGC	6 cut(s)	17, 67, 115, 118, 475, 616
BccI	CCATC	2 cut(s)	373, 722
BceAI	ACGGC	3 cut(s)	80, 199, 320
BcnI	CCSGG	1 cut(s)	626
BcoDI	GTCTC	2 cut(s)	76, 292
BfaI	CTAG	2 cut(s)	419, 468
BfmI	CTRYAG	1 cut(s)	23
BfuAI	ACCTGC	2 cut(s)	694, 814
BisI	GCNGC	8 cut(s)	6, 56, 72, 104, 107, 489, 594, 630
BlsI	GCNGC	8 cut(s)	7, 57, 73, 105, 108, 490, 595, 631
BmcAI	AGTACT	1 cut(s)	236
Bme1390I	CCNGG	1 cut(s)	626
Bme18I	GGWCC	2 cut(s)	130, 220
BmeT110I	CYCGRG	1 cut(s)	251
BmgT120I	GGNCC	2 cut(s)	130, 220
BmrFI	CCNGG	1 cut(s)	626
BmsI	GCATC	4 cut(s)	342, 687, 709, 810
BpiI	GAAGAC	1 cut(s)	180
BpmI	CTGGAG	1 cut(s)	648
Bpu10I	CCTNAGC	2 cut(s)	227, 588
BpuEI	CTTGAG	1 cut(s)	101
BpuMI	CCSGG	1 cut(s)	626
BsaHI	GRCGYC	1 cut(s)	93
BsaI	GGTCTC	1 cut(s)	292
BsaJI	CCNNGG	4 cut(s)	9, 69, 240, 336
BsaWI	WCCGGW	2 cut(s)	373, 562
BsaXI	ACNNNNNCTCC	2 cut(s)	30, 60
Bse118I	RCCGGY	1 cut(s)	346
Bse1I	ACTGG	1 cut(s)	232
BseDI	CCNNGG	4 cut(s)	9, 69, 240, 336
BseMII	CTCAG	2 cut(s)	218, 602
BseNI	ACTGG	1 cut(s)	232
BsePI	GCGCGC	1 cut(s)	18
BseSI	GKGCMC	1 cut(s)	739
BseXI	GCAGC	6 cut(s)	17, 67, 115, 118, 475, 616
BsgI	GTGCAG	1 cut(s)	672
Bsh1236I	CGCG	2 cut(s)	20, 71
BshFI	GGCC	2 cut(s)	186, 807
BsiHKAI	GWGCWC	3 cut(s)	258, 717, 739
BsiHKCI	CYCGRG	1 cut(s)	251
BsiSI	CCGG	4 cut(s)	347, 374, 563, 625
BslFI	GGGAC	1 cut(s)	659
BsmAI	GTCTC	2 cut(s)	76, 292
BsmFI	GGGAC	1 cut(s)	659
BsmI	GAATGC	2 cut(s)	165, 558
BsnI	GGCC	2 cut(s)	186, 807
Bso31I	GGTCTC	1 cut(s)	292
BsoBI	CYCGRG	1 cut(s)	251
Bsp1286I	GDGCHC	4 cut(s)	258, 717, 739, 815
Bsp143I	GATC	1 cut(s)	839
Bsp19I	CCATGG	2 cut(s)	9, 240
BspACI	CCGC	7 cut(s)	62, 69, 71, 74, 163, 593, 723
BspANI	GGCC	2 cut(s)	186, 807
BspCNI	CTCAG	2 cut(s)	219, 601
BspFNI	CGCG	2 cut(s)	20, 71
BspMI	ACCTGC	2 cut(s)	694, 814
BspQI	GCTCTTC	1 cut(s)	263
BspTNI	GGTCTC	1 cut(s)	292
BsrFI	RCCGGY	1 cut(s)	346
BsrI	ACTGG	1 cut(s)	232
BssAI	RCCGGY	1 cut(s)	346
BssECI	CCNNGG	4 cut(s)	9, 69, 240, 336
BssHII	GCGCGC	1 cut(s)	18
BssMI	GATC	1 cut(s)	839
BssNI	GRCGYC	1 cut(s)	93
BssT1I	CCWWGG	2 cut(s)	9, 240
Bst4CI	ACNGT	1 cut(s)	657
Bst6I	CTCTTC	1 cut(s)	263
BstACI	GRCGYC	1 cut(s)	93
BstC8I	GCNNGC	2 cut(s)	20, 193
BstDEI	CTNAG	2 cut(s)	227, 588
BstDSI	CCRYGG	4 cut(s)	9, 69, 240, 336
BstFNI	CGCG	2 cut(s)	20, 71
BstHHI	GCGC	2 cut(s)	20, 22
BstKTI	GATC	1 cut(s)	842
BstMAI	GTCTC	2 cut(s)	76, 292
BstMBI	GATC	1 cut(s)	839
BstMWI	GCNNNNNNNGC	5 cut(s)	61, 192, 332, 352, 593
BstSCI	CCNGG	1 cut(s)	624
BstSFI	CTRYAG	1 cut(s)	23
BstSLI	GKGCMC	1 cut(s)	739
BstUI	CGCG	2 cut(s)	20, 71
BstV1I	GCAGC	6 cut(s)	17, 67, 115, 118, 475, 616
BstV2I	GAAGAC	1 cut(s)	180
BsuRI	GGCC	2 cut(s)	186, 807
BtgI	CCRYGG	4 cut(s)	9, 69, 240, 336
BveI	ACCTGC	2 cut(s)	694, 814
Cac8I	GCNNGC	2 cut(s)	20, 193
CaiI	CAGNNNCTG	1 cut(s)	109
CfoI	GCGC	2 cut(s)	20, 22
Cfr10I	RCCGGY	1 cut(s)	346
Cfr13I	GGNCC	2 cut(s)	130, 220
Cfr42I	CCGCGG	1 cut(s)	72
CseI	GACGC	3 cut(s)	101, 656, 744
Csp6I	GTAC	3 cut(s)	98, 235, 766
CviAII	CATG	2 cut(s)	10, 241
CviQI	GTAC	3 cut(s)	98, 235, 766
DdeI	CTNAG	2 cut(s)	227, 588
DpnI	GATC	1 cut(s)	841
DpnII	GATC	1 cut(s)	839
EaeI	YGGCCR	2 cut(s)	184, 805
Eam1104I	CTCTTC	1 cut(s)	263
EarI	CTCTTC	1 cut(s)	263
Ecl136II	GAGCTC	1 cut(s)	256
Eco130I	CCWWGG	2 cut(s)	9, 240
Eco24I	GRGCYC	2 cut(s)	258, 815
Eco31I	GGTCTC	1 cut(s)	292
Eco47I	GGWCC	2 cut(s)	130, 220
Eco53kI	GAGCTC	1 cut(s)	256
Eco57I	CTGAAG	1 cut(s)	771
Eco88I	CYCGRG	1 cut(s)	251
EcoICRI	GAGCTC	1 cut(s)	256
EcoO109I	RGGNCCY	1 cut(s)	220
EcoT14I	CCWWGG	2 cut(s)	9, 240
EcoT22I	ATGCAT	1 cut(s)	702
EcoT38I	GRGCYC	2 cut(s)	258, 815
ErhI	CCWWGG	2 cut(s)	9, 240
FaeI	CATG	2 cut(s)	13, 244
FaiI	YATR	6 cut(s)	11, 242, 479, 642, 764, 844
FaqI	GGGAC	1 cut(s)	659
FatI	CATG	2 cut(s)	9, 240
FauI	CCCGC	2 cut(s)	76, 170
FblI	GTMKAC	1 cut(s)	270
Fnu4HI	GCNGC	8 cut(s)	6, 56, 72, 104, 107, 489, 594, 630
FriOI	GRGCYC	2 cut(s)	258, 815
Fsp4HI	GCNGC	8 cut(s)	6, 56, 72, 104, 107, 489, 594, 630
FspBI	CTAG	2 cut(s)	419, 468
GlaI	GCGC	2 cut(s)	19, 21
GluI	GCNGC	8 cut(s)	6, 56, 72, 104, 107, 489, 594, 630
GsuI	CTGGAG	1 cut(s)	648
HaeIII	GGCC	2 cut(s)	186, 807
HapII	CCGG	4 cut(s)	347, 374, 563, 625
HgaI	GACGC	3 cut(s)	101, 656, 744
HhaI	GCGC	2 cut(s)	20, 22
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	2 cut(s)	13, 244
Hin6I	GCGC	2 cut(s)	18, 20
HinP1I	GCGC	2 cut(s)	18, 20
HincII	GTYRAC	2 cut(s)	247, 271
HindII	GTYRAC	2 cut(s)	247, 271
HinfI	GANTC	2 cut(s)	616, 679
HpaII	CCGG	4 cut(s)	347, 374, 563, 625
HphI	GGTGA	3 cut(s)	151, 361, 737
Hpy166II	GTNNAC	4 cut(s)	247, 271, 322, 737
Hpy188I	TCNGA	1 cut(s)	696
Hpy188III	TCNNGA	7 cut(s)	170, 226, 442, 578, 605, 665, 749
Hpy8I	GTNNAC	4 cut(s)	247, 271, 322, 737
Hpy99I	CGWCG	5 cut(s)	95, 185, 272, 275, 364
HpyAV	CCTTC	2 cut(s)	8, 307
HpyCH4III	ACNGT	1 cut(s)	657
HpyCH4V	TGCA	6 cut(s)	427, 540, 689, 700, 737, 823
HpyF10VI	GCNNNNNNNGC	5 cut(s)	61, 192, 332, 352, 593
HpyF3I	CTNAG	2 cut(s)	227, 588
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	2 cut(s)	13, 244
HspAI	GCGC	2 cut(s)	18, 20
KspI	CCGCGG	1 cut(s)	72
Kzo9I	GATC	1 cut(s)	839
LguI	GCTCTTC	1 cut(s)	263
LmnI	GCTCC	1 cut(s)	485
Lsp1109I	GCAGC	6 cut(s)	17, 67, 115, 118, 475, 616
LweI	GCATC	4 cut(s)	342, 687, 709, 810
MaeI	CTAG	2 cut(s)	419, 468
MaeIII	GTNAC	1 cut(s)	794
MalI	GATC	1 cut(s)	841
MboI	GATC	1 cut(s)	839
MboII	GAAGA	2 cut(s)	185, 250
MhlI	GDGCHC	4 cut(s)	258, 717, 739, 815
MlsI	TGGCCA	1 cut(s)	807
MluCI	AATT	4 cut(s)	450, 600, 637, 831
MluNI	TGGCCA	1 cut(s)	807
MmeI	TCCRAC	1 cut(s)	73
Mox20I	TGGCCA	1 cut(s)	807
Mph1103I	ATGCAT	1 cut(s)	702
MscI	TGGCCA	1 cut(s)	807
MseI	TTAA	1 cut(s)	636
Msp20I	TGGCCA	1 cut(s)	807
MspA1I	CMGCKG	2 cut(s)	71, 109
MspI	CCGG	4 cut(s)	347, 374, 563, 625
MspR9I	CCNGG	1 cut(s)	626
Mva1269I	GAATGC	2 cut(s)	165, 558
MvnI	CGCG	2 cut(s)	20, 71
MwoI	GCNNNNNNNGC	5 cut(s)	61, 192, 332, 352, 593
NciI	CCSGG	1 cut(s)	626
NcoI	CCATGG	2 cut(s)	9, 240
NdeII	GATC	1 cut(s)	839
NlaIII	CATG	2 cut(s)	13, 244
NmeAIII	GCCGAG	3 cut(s)	352, 529, 529
NsiI	ATGCAT	1 cut(s)	702
PaeR7I	CTCGAG	1 cut(s)	251
PaqCI	CACCTGC	1 cut(s)	694
PauI	GCGCGC	1 cut(s)	18
PciSI	GCTCTTC	1 cut(s)	263
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PctI	GAATGC	2 cut(s)	165, 558
PfeI	GAWTC	2 cut(s)	616, 679
PkrI	GCNGC	8 cut(s)	7, 57, 73, 105, 108, 490, 595, 631
PpuMI	RGGWCCY	1 cut(s)	220
Psp124BI	GAGCTC	1 cut(s)	258
Psp5II	RGGWCCY	1 cut(s)	220
PspPI	GGNCC	2 cut(s)	130, 220
PspPPI	RGGWCCY	1 cut(s)	220
PspXI	VCTCGAGB	1 cut(s)	251
PstNI	CAGNNNCTG	1 cut(s)	109
PteI	GCGCGC	1 cut(s)	18
PvuII	CAGCTG	1 cut(s)	109
RsaI	GTAC	3 cut(s)	99, 236, 767
RsaNI	GTAC	3 cut(s)	98, 235, 766
SacI	GAGCTC	1 cut(s)	258
SacII	CCGCGG	1 cut(s)	72
SalI	GTCGAC	1 cut(s)	269
SapI	GCTCTTC	1 cut(s)	263
SaqAI	TTAA	1 cut(s)	636
SatI	GCNGC	8 cut(s)	6, 56, 72, 104, 107, 489, 594, 630
Sau3AI	GATC	1 cut(s)	839
Sau96I	GGNCC	2 cut(s)	130, 220
ScaI	AGTACT	1 cut(s)	236
ScrFI	CCNGG	1 cut(s)	626
SduI	GDGCHC	4 cut(s)	258, 717, 739, 815
SfaNI	GCATC	4 cut(s)	342, 687, 709, 810
SfcI	CTRYAG	1 cut(s)	23
Sfr274I	CTCGAG	1 cut(s)	251
Sfr303I	CCGCGG	1 cut(s)	72
SgrBI	CCGCGG	1 cut(s)	72
SgrDI	CGTCGACG	1 cut(s)	269
SinI	GGWCC	2 cut(s)	130, 220
SlaI	CTCGAG	1 cut(s)	251
SmlI	CTYRAG	2 cut(s)	116, 251
SmoI	CTYRAG	2 cut(s)	116, 251
Sse9I	AATT	4 cut(s)	450, 600, 637, 831
SsiI	CCGC	7 cut(s)	62, 69, 71, 74, 163, 593, 723
SspMI	CTAG	2 cut(s)	419, 468
SstI	GAGCTC	1 cut(s)	258
StyD4I	CCNGG	1 cut(s)	624
StyI	CCWWGG	2 cut(s)	9, 240
TaaI	ACNGT	1 cut(s)	657
TaqI	TCGA	8 cut(s)	171, 180, 252, 270, 362, 387, 443, 526
TaqII	GACCGA	1 cut(s)	147
TasI	AATT	4 cut(s)	450, 600, 637, 831
TatI	WGTACW	2 cut(s)	234, 765
TauI	GCSGC	2 cut(s)	74, 596
TfiI	GAWTC	2 cut(s)	616, 679
Tru1I	TTAA	1 cut(s)	636
Tru9I	TTAA	1 cut(s)	636
TseI	GCWGC	6 cut(s)	5, 55, 103, 106, 488, 629
TspGWI	ACGGA	1 cut(s)	112
VneI	GTGCAC	1 cut(s)	735
VpaK11BI	GGWCC	2 cut(s)	130, 220
XapI	RAATTY	1 cut(s)	600
XcmI	CCANNNNNNNNNTGG	1 cut(s)	298
XhoI	CTCGAG	1 cut(s)	251
XmiI	GTMKAC	1 cut(s)	270
XspI	CTAG	2 cut(s)	419, 468
ZrmI	AGTACT	1 cut(s)	236
Zsp2I	ATGCAT	1 cut(s)	702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.