Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008100

Physical Location & Seq

Genomic Coordinates Reverse (-)

1030402 .. 1032718

Gene Structure 2317 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G03390.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGTTCAAAGTCAGTCGTTAAGCACATTAACAATCTGTGGAAGTGTAAAAGTTTCAAGCTTGTTGAGGAATCGTTTAAATTCAGTGAAAGCTTCAAGCTTGATCGGTGATCGATGTGTTTCGTGTCAGTTTTTGCGTAAATCACCGTCCTTTAGAAGCCATTGGAAGTCATTAAAGCAAAGAAATTTGTTGAGGGTTGAAGCTAGATGGCCATTTCAAGGAGGTGGTGAACAAGGTTTAGACCCGAGCTCTGAGAGAAGCGAGAGTGCTAATGAAGATATATTGATCTTTTTCTTTCAGCTGGATTTGGCTACTCGTGTACAGTATGCAATGAATCTGGAGCAGTACGACATTGCGCAACAACTAAGAGAAAAGCTAACTGAGGTGGAAGAGGAGTCGATAAGGCTGCAGGAAGGGAAAAGAGGGTCATCAGCTAAAAGTGAAGCTCAAGACAAGGGTATTAGCATTATAAGGCTACGTGCAGATCTCCAGAATGCCATTGACAGTGAGGATTACGGTTTGGCAGCTAAGTTACGAGATGAAATCTCAAAGCTTGAGGCAGAATCATTAGCTGTATCTGCGAAAGCCTTGGCTTTTGAGAAAGCAGAGTATGCATTTCGTTTGGGACAGAAACTTAGACACAAAACTTTTGGTTACCGGGCTGTAGTGTGTGGTATGGATCCAATTTGCAGTGAATCAAGCTCTTGGATGGAAGCTGCAGAGGTTGAAAAGTTACCTCGTGGATCCAATCAGCCATTTTATCAGGTTCTAGTCGATGTTCGGACGCACCCAGATCTACTAGTGGCATATGTTGCTGAAGACAATCTGTTAGCTCCTGAAAAACCCGATAAGGAAAGGTTTGATCATCCATACATTTCTTTTCTCTACTATGGAGCTGACACAGCTGGAGATTTCATCCCTGTCAAACAATTGCGTGAGAAGTACAACAGACCTCGGCATGAAGTTCCTTTTGATTCACAAGACGAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009368 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009840 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UVR YccV-like

Protein Analysis

330

Amino Acids

37.44

Weight (kDa)

5.74

Isoelectric Point (pI)

54.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UVR	PF02151	155 - 187	5.4e-09	UvrB/uvrC motif
YccV-like	PF08755	205 - 258	8.3e-18	Hemimethylated DNA-binding protein YccV like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03390 AT2G03390 AT2G03390 AT2G03390 AT2G03390 AT2G03390 AT2G03390
fragaria_vesca	FvH4_4g30500 FvH4_4g30500
malus_domestica	MD16G1064900.v1.1
prunus_persica	Prupe.1G282000_v2.0.a1
pyrus_communis	pycom13g05840 pycom16g05670
rosa_chinensis	RchiOBHm_Chr4g0438871
rosa_laevigata	RLG00000006323
rosa_multiflora	Rmu_co8274455.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379890
rosa_rugosa	Rorug04G0313900.1
rosa_samantha	Rh4AG364700 Rh4BG375800 Rh4CG389900 Rh4DG370500
rosa_wichuraiana	Rw0G007280 Rw0G016830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	470
Acc16I	TGCGCA	1 cut(s)	357
AclWI	GGATC	4 cut(s)	674, 687, 738, 751
AcoI	YGGCCR	1 cut(s)	209
AcsI	RAATTY	2 cut(s)	79, 184
AcuI	CTGAAG	1 cut(s)	837
AfaI	GTAC	3 cut(s)	321, 347, 944
AfiI	CCNNNNNNNGG	1 cut(s)	218
AgsI	TTSAA	6 cut(s)	8, 57, 96, 200, 218, 728
AhlI	ACTAGT	1 cut(s)	799
Alw21I	GWGCWC	1 cut(s)	251
AlwI	GGATC	4 cut(s)	674, 687, 738, 751
Ama87I	CYCGRG	1 cut(s)	244
AoxI	GGCC	1 cut(s)	209
ApeKI	GCWGC	3 cut(s)	406, 524, 716
ApoI	RAATTY	2 cut(s)	79, 184
AspLEI	GCGC	1 cut(s)	358
AsuC2I	CCSGG	1 cut(s)	659
AsuHPI	GGTGA	3 cut(s)	119, 135, 239
AvaI	CYCGRG	1 cut(s)	244
BalI	TGGCCA	1 cut(s)	211
BamHI	GGATCC	2 cut(s)	679, 743
BanII	GRGCYC	1 cut(s)	251
BauI	CACGAG	2 cut(s)	315, 738
BbsI	GAAGAC	1 cut(s)	825
Bbv12I	GWGCWC	1 cut(s)	251
BbvI	GCAGC	3 cut(s)	393, 536, 703
BccI	CCATC	2 cut(s)	201, 703
BcgI	CGANNNNNNTGC	2 cut(s)	388, 422
BclI	TGATCA	1 cut(s)	862
BcnI	CCSGG	1 cut(s)	659
BcuI	ACTAGT	1 cut(s)	799
BfaI	CTAG	3 cut(s)	204, 770, 800
BfmI	CTRYAG	3 cut(s)	407, 663, 717
BglII	AGATCT	2 cut(s)	484, 793
BisI	GCNGC	3 cut(s)	407, 525, 717
BlsI	GCNGC	3 cut(s)	408, 526, 718
Bme1390I	CCNGG	1 cut(s)	659
BmeT110I	CYCGRG	1 cut(s)	244
BmiI	GGNNCC	2 cut(s)	681, 745
BmrFI	CCNGG	1 cut(s)	659
BpiI	GAAGAC	1 cut(s)	825
BpmI	CTGGAG	3 cut(s)	359, 473, 927
BpuEI	CTTGAG	2 cut(s)	432, 575
BpuMI	CCSGG	1 cut(s)	659
Bsa29I	ATCGAT	1 cut(s)	112
BsaAI	YACGTR	1 cut(s)	479
BsaJI	CCNNGG	2 cut(s)	588, 953
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
Bse3DI	GCAATG	2 cut(s)	336, 351
BseCI	ATCGAT	1 cut(s)	112
BseDI	CCNNGG	2 cut(s)	588, 953
BseGI	GGATG	3 cut(s)	714, 865, 915
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseMI	GCAATG	2 cut(s)	336, 351
BseMII	CTCAG	2 cut(s)	243, 372
BseRI	GAGGAG	1 cut(s)	407
BseXI	GCAGC	3 cut(s)	393, 536, 703
BsgI	GTGCAG	1 cut(s)	501
BshFI	GGCC	1 cut(s)	211
BshVI	ATCGAT	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	251
BsiHKCI	CYCGRG	1 cut(s)	244
BsiSI	CCGG	1 cut(s)	658
BslFI	GGGAC	1 cut(s)	639
BslI	CCNNNNNNNGG	1 cut(s)	218
BsmFI	GGGAC	1 cut(s)	639
BsmI	GAATGC	1 cut(s)	499
BsnI	GGCC	1 cut(s)	211
BsoBI	CYCGRG	1 cut(s)	244
Bsp1286I	GDGCHC	1 cut(s)	251
Bsp1407I	TGTACA	1 cut(s)	319
Bsp143I	GATC	8 cut(s)	102, 109, 285, 484, 679, 743, 793, 862
BspANI	GGCC	1 cut(s)	211
BspCNI	CTCAG	2 cut(s)	244, 373
BspDI	ATCGAT	1 cut(s)	112
BspLI	GGNNCC	2 cut(s)	681, 745
BspMAI	CTGCAG	2 cut(s)	411, 721
BspPI	GGATC	4 cut(s)	674, 687, 738, 751
BsrDI	GCAATG	2 cut(s)	336, 351
BsrGI	TGTACA	1 cut(s)	319
BssECI	CCNNGG	2 cut(s)	588, 953
BssMI	GATC	8 cut(s)	102, 109, 285, 484, 679, 743, 793, 862
BssSI	CACGAG	2 cut(s)	315, 738
BssT1I	CCWWGG	1 cut(s)	588
Bst2BI	CACGAG	2 cut(s)	315, 738
Bst4CI	ACNGT	4 cut(s)	147, 324, 506, 518
Bst6I	CTCTTC	1 cut(s)	384
BstAPI	GCANNNNNTGC	2 cut(s)	611, 812
BstAUI	TGTACA	1 cut(s)	319
BstBAI	YACGTR	1 cut(s)	479
BstDEI	CTNAG	5 cut(s)	252, 365, 381, 528, 635
BstEII	GGTNACC	1 cut(s)	653
BstF5I	GGATG	3 cut(s)	714, 865, 915
BstHHI	GCGC	1 cut(s)	358
BstKTI	GATC	8 cut(s)	105, 112, 288, 487, 682, 746, 796, 865
BstMBI	GATC	8 cut(s)	102, 109, 285, 484, 679, 743, 793, 862
BstMWI	GCNNNNNNNGC	4 cut(s)	578, 611, 812, 902
BstPI	GGTNACC	1 cut(s)	653
BstSCI	CCNGG	1 cut(s)	657
BstSFI	CTRYAG	3 cut(s)	407, 663, 717
BstV1I	GCAGC	3 cut(s)	393, 536, 703
BstV2I	GAAGAC	1 cut(s)	825
BstX2I	RGATCY	4 cut(s)	484, 679, 743, 793
BstYI	RGATCY	4 cut(s)	484, 679, 743, 793
Bsu15I	ATCGAT	1 cut(s)	112
BsuRI	GGCC	1 cut(s)	211
BsuTUI	ATCGAT	1 cut(s)	112
BtsCI	GGATG	3 cut(s)	714, 865, 915
BtsI	GCAGTG	1 cut(s)	697
BtsIMutI	CAGTG	3 cut(s)	90, 511, 697
CfoI	GCGC	1 cut(s)	358
ClaI	ATCGAT	1 cut(s)	112
CseI	GACGC	1 cut(s)	793
Csp6I	GTAC	3 cut(s)	320, 346, 943
CviAII	CATG	1 cut(s)	959
CviQI	GTAC	3 cut(s)	320, 346, 943
DdeI	CTNAG	5 cut(s)	252, 365, 381, 528, 635
DpnI	GATC	8 cut(s)	104, 111, 287, 486, 681, 745, 795, 864
DpnII	GATC	8 cut(s)	102, 109, 285, 484, 679, 743, 793, 862
DraI	TTTAAA	1 cut(s)	78
EaeI	YGGCCR	1 cut(s)	209
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
Ecl136II	GAGCTC	1 cut(s)	249
Eco130I	CCWWGG	1 cut(s)	588
Eco24I	GRGCYC	1 cut(s)	251
Eco53kI	GAGCTC	1 cut(s)	249
Eco57I	CTGAAG	1 cut(s)	837
Eco88I	CYCGRG	1 cut(s)	244
Eco91I	GGTNACC	1 cut(s)	653
EcoICRI	GAGCTC	1 cut(s)	249
EcoO65I	GGTNACC	1 cut(s)	653
EcoT14I	CCWWGG	1 cut(s)	588
EcoT22I	ATGCAT	1 cut(s)	616
EcoT38I	GRGCYC	1 cut(s)	251
ErhI	CCWWGG	1 cut(s)	588
FaeI	CATG	1 cut(s)	962
FaqI	GGGAC	1 cut(s)	639
FatI	CATG	1 cut(s)	958
FauNDI	CATATG	1 cut(s)	808
FbaI	TGATCA	1 cut(s)	862
Fnu4HI	GCNGC	3 cut(s)	407, 525, 717
FokI	GGATG	3 cut(s)	721, 852, 902
FriOI	GRGCYC	1 cut(s)	251
Fsp4HI	GCNGC	3 cut(s)	407, 525, 717
FspBI	CTAG	3 cut(s)	204, 770, 800
FspI	TGCGCA	1 cut(s)	357
GlaI	GCGC	1 cut(s)	357
GluI	GCNGC	3 cut(s)	407, 525, 717
GsuI	CTGGAG	3 cut(s)	359, 473, 927
HaeIII	GGCC	1 cut(s)	211
HapII	CCGG	1 cut(s)	658
HgaI	GACGC	1 cut(s)	793
HhaI	GCGC	1 cut(s)	358
Hin1II	CATG	1 cut(s)	962
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HindIII	AAGCTT	4 cut(s)	58, 90, 97, 551
HinfI	GANTC	6 cut(s)	70, 334, 395, 563, 695, 974
HpaII	CCGG	1 cut(s)	658
HphI	GGTGA	3 cut(s)	119, 135, 239
Hpy166II	GTNNAC	2 cut(s)	230, 320
Hpy188I	TCNGA	2 cut(s)	253, 783
Hpy188III	TCNNGA	4 cut(s)	338, 449, 490, 836
Hpy8I	GTNNAC	2 cut(s)	230, 320
HpyAV	CCTTC	1 cut(s)	407
HpyCH4III	ACNGT	4 cut(s)	147, 324, 506, 518
HpyCH4IV	ACGT	1 cut(s)	478
HpyCH4V	TGCA	6 cut(s)	329, 409, 482, 614, 690, 719
HpyF10VI	GCNNNNNNNGC	4 cut(s)	578, 611, 812, 902
HpyF3I	CTNAG	5 cut(s)	252, 365, 381, 528, 635
HpySE526I	ACGT	1 cut(s)	478
Hsp92II	CATG	1 cut(s)	962
HspAI	GCGC	1 cut(s)	356
Ksp22I	TGATCA	1 cut(s)	862
Kzo9I	GATC	8 cut(s)	102, 109, 285, 484, 679, 743, 793, 862
LmnI	GCTCC	3 cut(s)	340, 838, 893
Lsp1109I	GCAGC	3 cut(s)	393, 536, 703
MaeI	CTAG	3 cut(s)	204, 770, 800
MaeII	ACGT	1 cut(s)	478
MaeIII	GTNAC	3 cut(s)	531, 653, 732
MalI	GATC	8 cut(s)	104, 111, 287, 486, 681, 745, 795, 864
MboI	GATC	8 cut(s)	102, 109, 285, 484, 679, 743, 793, 862
MboII	GAAGA	3 cut(s)	287, 401, 830
MfeI	CAATTG	1 cut(s)	929
MflI	RGATCY	4 cut(s)	484, 679, 743, 793
MhlI	GDGCHC	1 cut(s)	251
MlsI	TGGCCA	1 cut(s)	211
MluCI	AATT	4 cut(s)	79, 184, 684, 929
MluNI	TGGCCA	1 cut(s)	211
MlyI	GAGTC	1 cut(s)	404
Mox20I	TGGCCA	1 cut(s)	211
Mph1103I	ATGCAT	1 cut(s)	616
MscI	TGGCCA	1 cut(s)	211
MseI	TTAA	5 cut(s)	20, 29, 77, 173, 991
Msp20I	TGGCCA	1 cut(s)	211
MspA1I	CMGCKG	2 cut(s)	301, 905
MspI	CCGG	1 cut(s)	658
MspR9I	CCNGG	1 cut(s)	659
MunI	CAATTG	1 cut(s)	929
Mva1269I	GAATGC	1 cut(s)	499
MwoI	GCNNNNNNNGC	4 cut(s)	578, 611, 812, 902
NciI	CCSGG	1 cut(s)	659
NdeI	CATATG	1 cut(s)	808
NdeII	GATC	8 cut(s)	102, 109, 285, 484, 679, 743, 793, 862
NlaIII	CATG	1 cut(s)	962
NlaIV	GGNNCC	2 cut(s)	681, 745
NmeAIII	GCCGAG	1 cut(s)	934
NsbI	TGCGCA	1 cut(s)	357
NsiI	ATGCAT	1 cut(s)	616
PctI	GAATGC	1 cut(s)	499
PfeI	GAWTC	5 cut(s)	70, 334, 563, 695, 974
PkrI	GCNGC	3 cut(s)	408, 526, 718
PleI	GAGTC	1 cut(s)	403
PpsI	GAGTC	1 cut(s)	403
Ppu21I	YACGTR	1 cut(s)	479
PsiI	TTATAA	1 cut(s)	470
Psp124BI	GAGCTC	1 cut(s)	251
PspEI	GGTNACC	1 cut(s)	653
PspN4I	GGNNCC	2 cut(s)	681, 745
PstI	CTGCAG	2 cut(s)	411, 721
PsuI	RGATCY	4 cut(s)	484, 679, 743, 793
PvuII	CAGCTG	2 cut(s)	301, 905
RsaI	GTAC	3 cut(s)	321, 347, 944
RsaNI	GTAC	3 cut(s)	320, 346, 943
SacI	GAGCTC	1 cut(s)	251
SaqAI	TTAA	5 cut(s)	20, 29, 77, 173, 991
SatI	GCNGC	3 cut(s)	407, 525, 717
Sau3AI	GATC	8 cut(s)	102, 109, 285, 484, 679, 743, 793, 862
SchI	GAGTC	1 cut(s)	404
ScrFI	CCNGG	1 cut(s)	659
SduI	GDGCHC	1 cut(s)	251
SfcI	CTRYAG	3 cut(s)	407, 663, 717
SmlI	CTYRAG	2 cut(s)	447, 554
SmoI	CTYRAG	2 cut(s)	447, 554
SpeI	ACTAGT	1 cut(s)	799
Sse9I	AATT	4 cut(s)	79, 184, 684, 929
SspMI	CTAG	3 cut(s)	204, 770, 800
SstI	GAGCTC	1 cut(s)	251
StyD4I	CCNGG	1 cut(s)	657
StyI	CCWWGG	1 cut(s)	588
TaaI	ACNGT	4 cut(s)	147, 324, 506, 518
TaiI	ACGT	1 cut(s)	481
TaqI	TCGA	3 cut(s)	112, 398, 774
TasI	AATT	4 cut(s)	79, 184, 684, 929
TatI	WGTACW	2 cut(s)	319, 942
TfiI	GAWTC	5 cut(s)	70, 334, 563, 695, 974
Tru1I	TTAA	5 cut(s)	20, 29, 77, 173, 991
Tru9I	TTAA	5 cut(s)	20, 29, 77, 173, 991
TscAI	CASTG	3 cut(s)	90, 511, 697
TseI	GCWGC	3 cut(s)	406, 524, 716
TspDTI	ATGAA	5 cut(s)	288, 347, 555, 904, 975
TspRI	CASTG	3 cut(s)	90, 511, 697
XapI	RAATTY	2 cut(s)	79, 184
XspI	CTAG	3 cut(s)	204, 770, 800
Zsp2I	ATGCAT	1 cut(s)	616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.