Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008100

Physical Location & Seq

Genomic Coordinates Reverse (-)

28490605 .. 28492994

Gene Structure 2390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G282000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGTGCAAGGTCTGTTACTGAACGCTCTAACTACGTCCCGCAATGGTGCCTTCTGTGGATCAATGCCTTCGTGGAGGAAGCATTTCAAACTAATGACGAAAACCCAGATAAGCTCTGTTATTGAAGGGCATGGTATCTGGCATCTGTGTCATCAAAGCTTAGTCTTAAGAGGTAACCCCAATATGTTAAAACAAAGGAACGTGAGGGTGGAAGCTGGGTGGCTGTTTAAAAGGGGTGATCAGGGGTTGAATGCACGCTCAGAGCAAAGCGAGGCTGCTAATGAGGATATTTTGATATTCTTTTTCCAGCTGGACCTGGCAACTCGAGTTCAGTATGCTTTGAACACGGAACAGTATGATATTGCACAACAACTAAGAAACAAGCTGACTGAGGTTGAAGCTGAGGTTATTAGGCAGCAAGAGGCAAAAAGGGGATCGTCTCTCAAGAGTGAAGCTCAAGATAAGGCTATAAGTATCATTCGCTTACGTGCAGACTTGCAGAAGGCAATTGAGAGTGAGAATTATGTGTTAGCAGCCAAGCTACGGGATTCAATATCTGAACTGGAGGCAGAATCACTGGCTGCATCCGCAAAAGCTTTGGCACATGAAAATGCAAATTATTCGTTTCGTTTGGGACAGAGAGTGAGGCATAAAAAATTTGGCTATCGAGCAGTGGTTTGTGGAATGGATCCCGTTTGTTGTGAATCAAGTTCATGGATGGAAACTGCAGAGGTTGAAAAGTTGCATCAGGGCTCTAATCAGCCATTTTATCAGGTTTTGGTTGATGTACATGCGGACCCCAACCTTCTGGTGGCATATGTTTCTGAGGAGAATCTTTTAGCCCCTGACGAACCAGATGTGCAATTGCGAGAGAAGTACAATAGACCCCGACATGAAATACCCTTTGATCCACTAGATGAGGGGCATGGAAGTGATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009368 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009840 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UVR YccV-like

Protein Analysis

314

Amino Acids

35.36

Weight (kDa)

6.09

Isoelectric Point (pI)

47.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03390 AT2G03390 AT2G03390 AT2G03390 AT2G03390 AT2G03390 AT2G03390
fragaria_vesca	FvH4_4g30500 FvH4_4g30500
malus_domestica	MD16G1064900.v1.1
prunus_persica	Prupe.1G282000_v2.0.a1
pyrus_communis	pycom13g05840 pycom16g05670
rosa_chinensis	RchiOBHm_Chr4g0438871
rosa_laevigata	RLG00000006323
rosa_multiflora	Rmu_co8274455.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379890
rosa_rugosa	Rorug04G0313900.1
rosa_samantha	Rh4AG364700 Rh4BG375800 Rh4CG389900 Rh4DG370500
rosa_wichuraiana	Rw0G007280 Rw0G016830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	47
AciI	CCGC	3 cut(s)	40, 588, 794
AclWI	GGATC	5 cut(s)	67, 442, 683, 696, 902
AcsI	RAATTY	1 cut(s)	656
AfaI	GTAC	2 cut(s)	789, 878
AfiI	CCNNNNNNNGG	2 cut(s)	543, 811
AflII	CTTAAG	1 cut(s)	166
AgsI	TTSAA	7 cut(s)	88, 125, 250, 343, 398, 552, 737
AjnI	CCWGG	1 cut(s)	315
AluBI	AGCT	9 cut(s)	114, 159, 215, 310, 385, 401, 455, 541, 596
AluI	AGCT	9 cut(s)	114, 159, 215, 310, 385, 401, 455, 541, 596
Alw26I	GTCTC	1 cut(s)	444
AlwI	GGATC	5 cut(s)	67, 442, 683, 696, 902
Ama87I	CYCGRG	1 cut(s)	324
ApeKI	GCWGC	4 cut(s)	275, 415, 533, 581
ApoI	RAATTY	1 cut(s)	656
Asp700I	GAANNNNTTC	1 cut(s)	83
AspS9I	GGNCC	2 cut(s)	313, 796
AsuHPI	GGTGA	1 cut(s)	248
AvaI	CYCGRG	1 cut(s)	324
AvaII	GGWCC	2 cut(s)	313, 796
BamHI	GGATCC	1 cut(s)	688
BanI	GGYRCC	1 cut(s)	47
BanII	GRGCYC	1 cut(s)	755
BbvCI	CCTCAGC	1 cut(s)	402
BbvI	GCAGC	4 cut(s)	262, 427, 545, 568
BccI	CCATC	1 cut(s)	712
BcgI	CGANNNNNNTGC	2 cut(s)	603, 637
BciT130I	CCWGG	1 cut(s)	317
BclI	TGATCA	1 cut(s)	238
BcoDI	GTCTC	1 cut(s)	444
BfaI	CTAG	1 cut(s)	914
BfmI	CTRYAG	1 cut(s)	726
BfrI	CTTAAG	1 cut(s)	166
BisI	GCNGC	4 cut(s)	276, 416, 534, 582
BlsI	GCNGC	4 cut(s)	277, 417, 535, 583
Bme1390I	CCNGG	1 cut(s)	317
Bme18I	GGWCC	2 cut(s)	313, 796
BmeT110I	CYCGRG	1 cut(s)	324
BmgT120I	GGNCC	2 cut(s)	313, 796
BmiI	GGNNCC	3 cut(s)	49, 690, 798
BmrFI	CCNGG	1 cut(s)	317
BmsI	GCATC	4 cut(s)	151, 593, 754, 925
BplI	GAGNNNNNCTC	2 cut(s)	439, 471
BpmI	CTGGAG	1 cut(s)	584
Bpu10I	CCTNAGC	1 cut(s)	402
BpuEI	CTTGAG	2 cut(s)	428, 441
BsaAI	YACGTR	1 cut(s)	488
Bsc4I	CCNNNNNNNGG	2 cut(s)	543, 811
Bse1I	ACTGG	2 cut(s)	567, 582
Bse3DI	GCAATG	1 cut(s)	49
BseBI	CCWGG	1 cut(s)	317
BseGI	GGATG	2 cut(s)	584, 723
BseLI	CCNNNNNNNGG	2 cut(s)	543, 811
BseMI	GCAATG	1 cut(s)	49
BseMII	CTCAG	4 cut(s)	273, 381, 393, 816
BseNI	ACTGG	2 cut(s)	567, 582
BseRI	GAGGAG	1 cut(s)	842
BseXI	GCAGC	4 cut(s)	262, 427, 545, 568
BseYI	CCCAGC	1 cut(s)	215
BsgI	GTGCAG	1 cut(s)	510
BshNI	GGYRCC	1 cut(s)	47
BsiHKCI	CYCGRG	1 cut(s)	324
BslFI	GGGAC	2 cut(s)	22, 648
BslI	CCNNNNNNNGG	2 cut(s)	543, 811
BsmAI	GTCTC	1 cut(s)	444
BsmBI	CGTCTC	1 cut(s)	444
BsmFI	GGGAC	2 cut(s)	22, 648
BsmI	GAATGC	1 cut(s)	256
BsoBI	CYCGRG	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	755
Bsp1407I	TGTACA	1 cut(s)	787
Bsp143I	GATC	5 cut(s)	59, 238, 434, 688, 907
BspACI	CCGC	3 cut(s)	40, 588, 794
BspCNI	CTCAG	4 cut(s)	272, 382, 394, 817
BspLI	GGNNCC	3 cut(s)	49, 690, 798
BspMAI	CTGCAG	1 cut(s)	730
BspPI	GGATC	5 cut(s)	67, 442, 683, 696, 902
BspT107I	GGYRCC	1 cut(s)	47
BspTI	CTTAAG	1 cut(s)	166
BsrDI	GCAATG	1 cut(s)	49
BsrGI	TGTACA	1 cut(s)	787
BsrI	ACTGG	2 cut(s)	567, 582
BssMI	GATC	5 cut(s)	59, 238, 434, 688, 907
Bst2UI	CCWGG	1 cut(s)	317
Bst4CI	ACNGT	1 cut(s)	354
BstAFI	CTTAAG	1 cut(s)	166
BstAUI	TGTACA	1 cut(s)	787
BstBAI	YACGTR	1 cut(s)	488
BstC8I	GCNNGC	1 cut(s)	256
BstDEI	CTNAG	7 cut(s)	160, 259, 374, 390, 402, 825, 939
BstEII	GGTNACC	1 cut(s)	173
BstF5I	GGATG	2 cut(s)	584, 723
BstKTI	GATC	5 cut(s)	62, 241, 437, 691, 910
BstMAI	GTCTC	1 cut(s)	444
BstMBI	GATC	5 cut(s)	59, 238, 434, 688, 907
BstMWI	GCNNNNNNNGC	1 cut(s)	587
BstNI	CCWGG	1 cut(s)	317
BstNSI	RCATGY	1 cut(s)	794
BstPI	GGTNACC	1 cut(s)	173
BstSCI	CCNGG	1 cut(s)	315
BstSFI	CTRYAG	1 cut(s)	726
BstV1I	GCAGC	4 cut(s)	262, 427, 545, 568
BstX2I	RGATCY	1 cut(s)	688
BstXI	CCANNNNNNTGG	1 cut(s)	808
BstYI	RGATCY	1 cut(s)	688
BtsCI	GGATG	2 cut(s)	584, 723
BtsI	GCAGTG	1 cut(s)	678
BtsIMutI	CAGTG	2 cut(s)	575, 678
Cac8I	GCNNGC	1 cut(s)	256
Cfr13I	GGNCC	2 cut(s)	313, 796
Csp6I	GTAC	2 cut(s)	788, 877
CviAII	CATG	6 cut(s)	131, 605, 714, 791, 893, 926
CviQI	GTAC	2 cut(s)	788, 877
DdeI	CTNAG	7 cut(s)	160, 259, 374, 390, 402, 825, 939
DpnI	GATC	5 cut(s)	61, 240, 436, 690, 909
DpnII	GATC	5 cut(s)	59, 238, 434, 688, 907
DraI	TTTAAA	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	755
Eco47I	GGWCC	2 cut(s)	313, 796
Eco88I	CYCGRG	1 cut(s)	324
Eco91I	GGTNACC	1 cut(s)	173
EcoO65I	GGTNACC	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	315
EcoT38I	GRGCYC	1 cut(s)	755
Esp3I	CGTCTC	1 cut(s)	444
FaeI	CATG	6 cut(s)	134, 608, 717, 794, 896, 929
FalI	AAGNNNNNCTT	1 cut(s)	922
FaqI	GGGAC	2 cut(s)	22, 648
FatI	CATG	6 cut(s)	130, 604, 713, 790, 892, 925
FauI	CCCGC	1 cut(s)	47
FauNDI	CATATG	1 cut(s)	817
FbaI	TGATCA	1 cut(s)	238
Fnu4HI	GCNGC	4 cut(s)	276, 416, 534, 582
FokI	GGATG	2 cut(s)	571, 730
FriOI	GRGCYC	1 cut(s)	755
Fsp4HI	GCNGC	4 cut(s)	276, 416, 534, 582
FspBI	CTAG	1 cut(s)	914
GluI	GCNGC	4 cut(s)	276, 416, 534, 582
GsaI	CCCAGC	1 cut(s)	219
GsuI	CTGGAG	1 cut(s)	584
Hin1II	CATG	6 cut(s)	134, 608, 717, 794, 896, 929
HindIII	AAGCTT	2 cut(s)	157, 594
HinfI	GANTC	4 cut(s)	548, 572, 704, 832
HphI	GGTGA	1 cut(s)	248
Hpy188I	TCNGA	3 cut(s)	262, 559, 826
Hpy188III	TCNNGA	2 cut(s)	445, 458
HpyAV	CCTTC	5 cut(s)	61, 78, 119, 496, 815
HpyCH4III	ACNGT	1 cut(s)	354
HpyCH4IV	ACGT	3 cut(s)	35, 201, 487
HpyF10VI	GCNNNNNNNGC	1 cut(s)	587
HpyF3I	CTNAG	7 cut(s)	160, 259, 374, 390, 402, 825, 939
HpySE526I	ACGT	3 cut(s)	35, 201, 487
Hsp92II	CATG	6 cut(s)	134, 608, 717, 794, 896, 929
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	5 cut(s)	59, 238, 434, 688, 907
Lsp1109I	GCAGC	4 cut(s)	262, 427, 545, 568
LweI	GCATC	4 cut(s)	151, 593, 754, 925
MaeI	CTAG	1 cut(s)	914
MaeII	ACGT	3 cut(s)	35, 201, 487
MaeIII	GTNAC	2 cut(s)	15, 173
MalI	GATC	5 cut(s)	61, 240, 436, 690, 909
MboI	GATC	5 cut(s)	59, 238, 434, 688, 907
MfeI	CAATTG	2 cut(s)	507, 863
MflI	RGATCY	1 cut(s)	688
MhlI	GDGCHC	1 cut(s)	755
MluCI	AATT	5 cut(s)	507, 520, 616, 656, 863
MroXI	GAANNNNTTC	1 cut(s)	83
MseI	TTAA	3 cut(s)	167, 188, 228
MslI	CAYNNNNRTG	2 cut(s)	609, 930
MspA1I	CMGCKG	1 cut(s)	310
MspCI	CTTAAG	1 cut(s)	166
MspR9I	CCNGG	1 cut(s)	317
MunI	CAATTG	2 cut(s)	507, 863
Mva1269I	GAATGC	1 cut(s)	256
MvaI	CCWGG	1 cut(s)	317
MwoI	GCNNNNNNNGC	1 cut(s)	587
NdeI	CATATG	1 cut(s)	817
NdeII	GATC	5 cut(s)	59, 238, 434, 688, 907
NlaIII	CATG	6 cut(s)	134, 608, 717, 794, 896, 929
NlaIV	GGNNCC	3 cut(s)	49, 690, 798
NspI	RCATGY	1 cut(s)	794
PaeR7I	CTCGAG	1 cut(s)	324
PctI	GAATGC	1 cut(s)	256
PdmI	GAANNNNTTC	1 cut(s)	83
PfeI	GAWTC	4 cut(s)	548, 572, 704, 832
PkrI	GCNGC	4 cut(s)	277, 417, 535, 583
Ppu21I	YACGTR	1 cut(s)	488
Psp6I	CCWGG	1 cut(s)	315
PspEI	GGTNACC	1 cut(s)	173
PspFI	CCCAGC	1 cut(s)	215
PspGI	CCWGG	1 cut(s)	315
PspN4I	GGNNCC	3 cut(s)	49, 690, 798
PspPI	GGNCC	2 cut(s)	313, 796
PspXI	VCTCGAGB	1 cut(s)	324
PstI	CTGCAG	1 cut(s)	730
PsuI	RGATCY	1 cut(s)	688
PvuII	CAGCTG	1 cut(s)	310
RsaI	GTAC	2 cut(s)	789, 878
RsaNI	GTAC	2 cut(s)	788, 877
RseI	CAYNNNNRTG	2 cut(s)	609, 930
SaqAI	TTAA	3 cut(s)	167, 188, 228
SatI	GCNGC	4 cut(s)	276, 416, 534, 582
Sau3AI	GATC	5 cut(s)	59, 238, 434, 688, 907
Sau96I	GGNCC	2 cut(s)	313, 796
ScrFI	CCNGG	1 cut(s)	317
SduI	GDGCHC	1 cut(s)	755
SfaNI	GCATC	4 cut(s)	151, 593, 754, 925
SfcI	CTRYAG	1 cut(s)	726
Sfr274I	CTCGAG	1 cut(s)	324
SinI	GGWCC	2 cut(s)	313, 796
SlaI	CTCGAG	1 cut(s)	324
SmiMI	CAYNNNNRTG	2 cut(s)	609, 930
SmlI	CTYRAG	4 cut(s)	166, 324, 443, 456
SmoI	CTYRAG	4 cut(s)	166, 324, 443, 456
Sse9I	AATT	5 cut(s)	507, 520, 616, 656, 863
SsiI	CCGC	3 cut(s)	40, 588, 794
SspMI	CTAG	1 cut(s)	914
StyD4I	CCNGG	1 cut(s)	315
TaaI	ACNGT	1 cut(s)	354
TaiI	ACGT	3 cut(s)	38, 204, 490
TaqI	TCGA	2 cut(s)	325, 667
TasI	AATT	5 cut(s)	507, 520, 616, 656, 863
TatI	WGTACW	2 cut(s)	787, 876
TfiI	GAWTC	4 cut(s)	548, 572, 704, 832
Tru1I	TTAA	3 cut(s)	167, 188, 228
Tru9I	TTAA	3 cut(s)	167, 188, 228
TscAI	CASTG	2 cut(s)	582, 678
TseI	GCWGC	4 cut(s)	275, 415, 533, 581
TspDTI	ATGAA	3 cut(s)	621, 702, 909
TspGWI	ACGGA	1 cut(s)	362
TspRI	CASTG	2 cut(s)	582, 678
Vha464I	CTTAAG	1 cut(s)	166
VpaK11BI	GGWCC	2 cut(s)	313, 796
XapI	RAATTY	1 cut(s)	656
XceI	RCATGY	1 cut(s)	794
XcmI	CCANNNNNNNNNTGG	1 cut(s)	808
XhoI	CTCGAG	1 cut(s)	324
XmnI	GAANNNNTTC	1 cut(s)	83
XspI	CTAG	1 cut(s)	914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.