Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0008100

Physical Location & Seq

Genomic Coordinates Forward (+)

64048426 .. 64051504

Gene Structure 3079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG389900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGTCGAAAATTGTAGTTTACAAAAGAAGGAATTAGATATTTCTCCTCTTCGTTCTCACTTCTTTTTCATAAATATTGGGAATTCATTATCTTATAAAATCTTGAAGACGAAGACGCACGTTGGCCTCGTTGCTTTCTCCGCATTATCTGCTTGGAGCTTGAAATGTAATTGGACTTGCTGCGCCCTTGTAGATGCTGATGTTGCTTTGAAAAGAGTCTGGGAAAAAACAAGGGTATTGTTGAAAATGGTGCAAGGTTTGTCACTGAGCACTCTGGCTACGTCGCGTAGCAGTTGTGTTTGTGGATCAATGCCTTCATGGAGGAGGCATTTTAGAGTAATGAGGAAAGACCAGATAAGTAGCGAAAGAAATTTCATGTGGCATCAGTGTGATCATAGCGTATTCGTGAAAGGTAACCCTCATATGTTGAGGCAAAGGAATGTAAGGGTGGAAGCTGGGTGGCTGTTTAAAGGGGGTGATCGGGGGTCGGATGCAATCTCAGAGCGCAGTGAGAGTGCTAATGTGGATATTTTGATATTCTTCTTCCAGCTGGACCTGGCAACTCGAGTCCAGTATGCATTGAACGTGGAAGAGTATGACATTGCACAACAACTGAGAACCAAGCTGGCTGAGGTTGAAGCAGAAGTTGCTAGGCAGCAGGAGGGGAAAAGGGGATCGTCTTCAAAGAGTGAAGCTCAAGATAAGGCTATAAGTCTCATTCGCTTACGGGCAGACCTGCAGGGTGCAATTGAGAGTGAGAATTATGCATTGGCAGCCAAGCTACGGGATGAAATTTCCAAACTGGAGGCAGAGTCATTGGCTATATCAGCCAAAGCTTTGGCACATGAAAATGCAAACTATTCATTTCGTTTGGGACAGAGAGTGAGGCATAAAAATTTTGGCTATAGGGCTGTGGTTTGTGGAATGGATCCAGTGTGCTGTGAATCAAGTTCATGGATGGAAACTGCTCAAGTTGAAAAGTTGTCACGGGGTTCTAATCAGCCATTTTATCAGGTTTTGGTTGATGTTCATGCAGATCCCAACCTTCTGGTGGCTTATGTTGCTGAGGAGAATCTATTGGCCCCTAACAAACCAGACTTGGATCGATTTGATCATCCCTATATTTCCTTCTTATTCTATGGGATGGATGCAGCTGGTGATTTCATCCCTATCAAGCAACTACGCGAGAAGTACAACAGGCCGCGACATGAAATACCGCTCGATGAGGAGCCTGGAGGCGATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009368 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009840 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UVR YccV-like

Protein Analysis

415

Amino Acids

46.99

Weight (kDa)

7.98

Isoelectric Point (pI)

42.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UVR	PF02151	239 - 270	4.6e-06	UvrB/uvrC motif
YccV-like	PF08755	288 - 384	2.5e-28	Hemimethylated DNA-binding protein YccV like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03390 AT2G03390 AT2G03390 AT2G03390 AT2G03390 AT2G03390 AT2G03390
fragaria_vesca	FvH4_4g30500 FvH4_4g30500
malus_domestica	MD16G1064900.v1.1
prunus_persica	Prupe.1G282000_v2.0.a1
pyrus_communis	pycom13g05840 pycom16g05670
rosa_chinensis	RchiOBHm_Chr4g0438871
rosa_laevigata	RLG00000006323
rosa_multiflora	Rmu_co8274455.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379890
rosa_rugosa	Rorug04G0313900.1
rosa_samantha	Rh4AG364700 Rh4BG375800 Rh4CG389900 Rh4DG370500
rosa_wichuraiana	Rw0G007280 Rw0G016830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	96
Acc36I	ACCTGC	1 cut(s)	744
AccBSI	CCGCTC	1 cut(s)	1219
AccII	CGCG	3 cut(s)	286, 1185, 1204
AciI	CCGC	3 cut(s)	141, 1202, 1217
AclWI	GGATC	6 cut(s)	313, 682, 923, 936, 1031, 1110
AcsI	RAATTY	4 cut(s)	82, 370, 792, 895
AfaI	GTAC	1 cut(s)	1193
AfiI	CCNNNNNNNGG	2 cut(s)	783, 1051
AgsI	TTSAA	8 cut(s)	106, 163, 211, 244, 583, 638, 684, 977
AjnI	CCWGG	2 cut(s)	555, 1231
AjuI	GAANNNNNNNTTGG	2 cut(s)	752, 784
AluBI	AGCT	8 cut(s)	159, 455, 550, 625, 695, 781, 836, 1154
AluI	AGCT	8 cut(s)	159, 455, 550, 625, 695, 781, 836, 1154
Alw21I	GWGCWC	1 cut(s)	272
Alw26I	GTCTC	1 cut(s)	719
AlwI	GGATC	6 cut(s)	313, 682, 923, 936, 1031, 1110
Ama87I	CYCGRG	1 cut(s)	564
AoxI	GGCC	3 cut(s)	124, 1080, 1199
ApeKI	GCWGC	4 cut(s)	180, 655, 773, 1151
ApoI	RAATTY	4 cut(s)	82, 370, 792, 895
AspLEI	GCGC	2 cut(s)	185, 507
AspS9I	GGNCC	2 cut(s)	553, 1081
AsuHPI	GGTGA	2 cut(s)	488, 1169
AvaI	CYCGRG	1 cut(s)	564
AvaII	GGWCC	1 cut(s)	553
BamHI	GGATCC	1 cut(s)	928
BbsI	GAAGAC	3 cut(s)	113, 119, 672
Bbv12I	GWGCWC	1 cut(s)	272
BbvCI	CCTCAGC	2 cut(s)	630, 1065
BbvI	GCAGC	4 cut(s)	167, 667, 785, 1163
BccI	CCATC	2 cut(s)	952, 1138
BciT130I	CCWGG	2 cut(s)	557, 1233
BclI	TGATCA	2 cut(s)	391, 1111
BcoDI	GTCTC	1 cut(s)	719
BfaI	CTAG	1 cut(s)	651
BfmI	CTRYAG	2 cut(s)	737, 904
BfuAI	ACCTGC	1 cut(s)	744
BisI	GCNGC	5 cut(s)	181, 656, 774, 1152, 1202
BlsI	GCNGC	5 cut(s)	182, 657, 775, 1153, 1203
Bme1390I	CCNGG	2 cut(s)	557, 1233
Bme18I	GGWCC	1 cut(s)	553
BmeT110I	CYCGRG	1 cut(s)	564
BmgT120I	GGNCC	2 cut(s)	553, 1081
BmiI	GGNNCC	3 cut(s)	930, 1083, 1230
BmrFI	CCNGG	2 cut(s)	557, 1233
BmsI	GCATC	5 cut(s)	184, 391, 481, 1138, 1231
BpiI	GAAGAC	3 cut(s)	113, 119, 672
BplI	GAGNNNNNCTC	2 cut(s)	679, 711
BpmI	CTGGAG	1 cut(s)	824
Bpu10I	CCTNAGC	2 cut(s)	630, 1065
BpuEI	CTTGAG	2 cut(s)	681, 954
Bsa29I	ATCGAT	1 cut(s)	1105
BsaXI	ACNNNNNCTCC	2 cut(s)	797, 827
Bsc4I	CCNNNNNNNGG	2 cut(s)	783, 1051
Bse1I	ACTGG	3 cut(s)	571, 807, 932
Bse3DI	GCAATG	1 cut(s)	600
BseBI	CCWGG	2 cut(s)	557, 1233
BseCI	ATCGAT	1 cut(s)	1105
BseGI	GGATG	7 cut(s)	496, 793, 963, 1114, 1149, 1153, 1164
BseLI	CCNNNNNNNGG	2 cut(s)	783, 1051
BseMI	GCAATG	1 cut(s)	600
BseMII	CTCAG	5 cut(s)	257, 513, 605, 621, 1056
BseNI	ACTGG	3 cut(s)	571, 807, 932
BseRI	GAGGAG	4 cut(s)	36, 337, 1082, 1241
BseXI	GCAGC	4 cut(s)	167, 667, 785, 1163
BseYI	CCCAGC	1 cut(s)	455
Bsh1236I	CGCG	3 cut(s)	286, 1185, 1204
BshFI	GGCC	3 cut(s)	126, 1082, 1201
BshVI	ATCGAT	1 cut(s)	1105
BsiHKAI	GWGCWC	1 cut(s)	272
BsiHKCI	CYCGRG	1 cut(s)	564
BslFI	GGGAC	1 cut(s)	888
BslI	CCNNNNNNNGG	2 cut(s)	783, 1051
BsmAI	GTCTC	1 cut(s)	719
BsmFI	GGGAC	1 cut(s)	888
BsnI	GGCC	3 cut(s)	126, 1082, 1201
BsoBI	CYCGRG	1 cut(s)	564
Bsp1286I	GDGCHC	1 cut(s)	272
Bsp143I	GATC	8 cut(s)	305, 391, 478, 674, 928, 1036, 1102, 1111
BspACI	CCGC	3 cut(s)	141, 1202, 1217
BspANI	GGCC	3 cut(s)	126, 1082, 1201
BspCNI	CTCAG	5 cut(s)	258, 512, 606, 622, 1057
BspDI	ATCGAT	1 cut(s)	1105
BspFNI	CGCG	3 cut(s)	286, 1185, 1204
BspLI	GGNNCC	3 cut(s)	930, 1083, 1230
BspMAI	CTGCAG	1 cut(s)	741
BspMI	ACCTGC	1 cut(s)	744
BspPI	GGATC	6 cut(s)	313, 682, 923, 936, 1031, 1110
BsrBI	CCGCTC	1 cut(s)	1219
BsrDI	GCAATG	1 cut(s)	600
BsrI	ACTGG	3 cut(s)	571, 807, 932
BssMI	GATC	8 cut(s)	305, 391, 478, 674, 928, 1036, 1102, 1111
Bst2UI	CCWGG	2 cut(s)	557, 1233
Bst6I	CTCTTC	2 cut(s)	54, 585
BstAPI	GCANNNNNTGC	2 cut(s)	149, 647
BstC8I	GCNNGC	1 cut(s)	627
BstDEI	CTNAG	5 cut(s)	266, 499, 614, 630, 1065
BstEII	GGTNACC	1 cut(s)	413
BstF5I	GGATG	7 cut(s)	496, 793, 963, 1114, 1149, 1153, 1164
BstFNI	CGCG	3 cut(s)	286, 1185, 1204
BstHHI	GCGC	2 cut(s)	185, 507
BstKTI	GATC	8 cut(s)	308, 394, 481, 677, 931, 1039, 1105, 1114
BstMAI	GTCTC	1 cut(s)	719
BstMBI	GATC	8 cut(s)	305, 391, 478, 674, 928, 1036, 1102, 1111
BstMWI	GCNNNNNNNGC	7 cut(s)	140, 149, 203, 647, 773, 827, 1061
BstNI	CCWGG	2 cut(s)	557, 1233
BstPI	GGTNACC	1 cut(s)	413
BstSCI	CCNGG	2 cut(s)	555, 1231
BstSFI	CTRYAG	2 cut(s)	737, 904
BstUI	CGCG	3 cut(s)	286, 1185, 1204
BstV1I	GCAGC	4 cut(s)	167, 667, 785, 1163
BstV2I	GAAGAC	3 cut(s)	113, 119, 672
BstX2I	RGATCY	2 cut(s)	928, 1036
BstXI	CCANNNNNNTGG	2 cut(s)	838, 1048
BstYI	RGATCY	2 cut(s)	928, 1036
Bsu15I	ATCGAT	1 cut(s)	1105
BsuRI	GGCC	3 cut(s)	126, 1082, 1201
BsuTUI	ATCGAT	1 cut(s)	1105
BtsCI	GGATG	7 cut(s)	496, 793, 963, 1114, 1149, 1153, 1164
BtsI	GCAGTG	1 cut(s)	514
BtsIMutI	CAGTG	4 cut(s)	263, 392, 514, 939
BveI	ACCTGC	1 cut(s)	744
Cac8I	GCNNGC	1 cut(s)	627
CfoI	GCGC	2 cut(s)	185, 507
Cfr13I	GGNCC	2 cut(s)	553, 1081
ClaI	ATCGAT	1 cut(s)	1105
CseI	GACGC	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	1192
CviAII	CATG	6 cut(s)	318, 376, 845, 954, 1031, 1208
CviQI	GTAC	1 cut(s)	1192
DdeI	CTNAG	5 cut(s)	266, 499, 614, 630, 1065
DpnI	GATC	8 cut(s)	307, 393, 480, 676, 930, 1038, 1104, 1113
DpnII	GATC	8 cut(s)	305, 391, 478, 674, 928, 1036, 1102, 1111
DraI	TTTAAA	1 cut(s)	469
Eam1104I	CTCTTC	2 cut(s)	54, 585
EarI	CTCTTC	2 cut(s)	54, 585
Eco47I	GGWCC	1 cut(s)	553
Eco88I	CYCGRG	1 cut(s)	564
Eco91I	GGTNACC	1 cut(s)	413
EcoO65I	GGTNACC	1 cut(s)	413
EcoRI	GAATTC	1 cut(s)	82
EcoRII	CCWGG	2 cut(s)	555, 1231
EcoT22I	ATGCAT	2 cut(s)	580, 769
FaeI	CATG	6 cut(s)	321, 379, 848, 957, 1034, 1211
FaqI	GGGAC	1 cut(s)	888
FatI	CATG	6 cut(s)	317, 375, 844, 953, 1030, 1207
FauNDI	CATATG	1 cut(s)	423
FbaI	TGATCA	2 cut(s)	391, 1111
Fnu4HI	GCNGC	5 cut(s)	181, 656, 774, 1152, 1202
FokI	GGATG	7 cut(s)	503, 800, 970, 1101, 1151, 1156, 1160
Fsp4HI	GCNGC	5 cut(s)	181, 656, 774, 1152, 1202
FspBI	CTAG	1 cut(s)	651
GlaI	GCGC	2 cut(s)	184, 506
GluI	GCNGC	5 cut(s)	181, 656, 774, 1152, 1202
GsaI	CCCAGC	1 cut(s)	459
GsuI	CTGGAG	1 cut(s)	824
HaeIII	GGCC	3 cut(s)	126, 1082, 1201
HgaI	GACGC	1 cut(s)	124
HhaI	GCGC	2 cut(s)	185, 507
Hin1II	CATG	6 cut(s)	321, 379, 848, 957, 1034, 1211
Hin6I	GCGC	2 cut(s)	183, 505
HinP1I	GCGC	2 cut(s)	183, 505
HindIII	AAGCTT	1 cut(s)	834
HinfI	GANTC	5 cut(s)	216, 567, 812, 944, 1072
HphI	GGTGA	2 cut(s)	488, 1169
Hpy166II	GTNNAC	1 cut(s)	20
Hpy188I	TCNGA	2 cut(s)	490, 502
Hpy188III	TCNNGA	3 cut(s)	103, 406, 698
Hpy8I	GTNNAC	1 cut(s)	20
Hpy99I	CGWCG	1 cut(s)	286
HpyAV	CCTTC	4 cut(s)	22, 324, 1055, 1138
HpyCH4IV	ACGT	3 cut(s)	120, 281, 585
HpyF10VI	GCNNNNNNNGC	7 cut(s)	140, 149, 203, 647, 773, 827, 1061
HpyF3I	CTNAG	5 cut(s)	266, 499, 614, 630, 1065
HpySE526I	ACGT	3 cut(s)	120, 281, 585
Hsp92II	CATG	6 cut(s)	321, 379, 848, 957, 1034, 1211
HspAI	GCGC	2 cut(s)	183, 505
Ksp22I	TGATCA	2 cut(s)	391, 1111
Kzo9I	GATC	8 cut(s)	305, 391, 478, 674, 928, 1036, 1102, 1111
LmnI	GCTCC	2 cut(s)	156, 1228
Lsp1109I	GCAGC	4 cut(s)	167, 667, 785, 1163
LweI	GCATC	5 cut(s)	184, 391, 481, 1138, 1231
MaeI	CTAG	1 cut(s)	651
MaeII	ACGT	3 cut(s)	120, 281, 585
MaeIII	GTNAC	3 cut(s)	261, 413, 984
MalI	GATC	8 cut(s)	307, 393, 480, 676, 930, 1038, 1104, 1113
MbiI	CCGCTC	1 cut(s)	1219
MboI	GATC	8 cut(s)	305, 391, 478, 674, 928, 1036, 1102, 1111
MboII	GAAGA	7 cut(s)	41, 118, 124, 532, 535, 602, 672
MfeI	CAATTG	1 cut(s)	747
MflI	RGATCY	2 cut(s)	928, 1036
MhlI	GDGCHC	1 cut(s)	272
MluCI	AATT	9 cut(s)	10, 32, 82, 169, 370, 747, 760, 792, 895
MlyI	GAGTC	3 cut(s)	225, 576, 821
MmeI	TCCRAC	1 cut(s)	468
Mph1103I	ATGCAT	2 cut(s)	580, 769
MseI	TTAA	2 cut(s)	468, 1246
MslI	CAYNNNNRTG	2 cut(s)	387, 849
MspA1I	CMGCKG	2 cut(s)	550, 1154
MspR9I	CCNGG	2 cut(s)	557, 1233
MunI	CAATTG	1 cut(s)	747
MvaI	CCWGG	2 cut(s)	557, 1233
MvnI	CGCG	3 cut(s)	286, 1185, 1204
MwoI	GCNNNNNNNGC	7 cut(s)	140, 149, 203, 647, 773, 827, 1061
NdeI	CATATG	1 cut(s)	423
NdeII	GATC	8 cut(s)	305, 391, 478, 674, 928, 1036, 1102, 1111
NlaIII	CATG	6 cut(s)	321, 379, 848, 957, 1034, 1211
NlaIV	GGNNCC	3 cut(s)	930, 1083, 1230
NmuCI	GTSAC	2 cut(s)	261, 984
NsiI	ATGCAT	2 cut(s)	580, 769
PaeR7I	CTCGAG	1 cut(s)	564
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PfeI	GAWTC	2 cut(s)	944, 1072
PkrI	GCNGC	5 cut(s)	182, 657, 775, 1153, 1203
PleI	GAGTC	3 cut(s)	224, 575, 820
PpsI	GAGTC	3 cut(s)	224, 575, 820
PsiI	TTATAA	1 cut(s)	96
Psp6I	CCWGG	2 cut(s)	555, 1231
PspEI	GGTNACC	1 cut(s)	413
PspFI	CCCAGC	1 cut(s)	455
PspGI	CCWGG	2 cut(s)	555, 1231
PspN4I	GGNNCC	3 cut(s)	930, 1083, 1230
PspPI	GGNCC	2 cut(s)	553, 1081
PspXI	VCTCGAGB	1 cut(s)	564
PstI	CTGCAG	1 cut(s)	741
PsuI	RGATCY	2 cut(s)	928, 1036
PvuII	CAGCTG	2 cut(s)	550, 1154
RsaI	GTAC	1 cut(s)	1193
RsaNI	GTAC	1 cut(s)	1192
RseI	CAYNNNNRTG	2 cut(s)	387, 849
SaqAI	TTAA	2 cut(s)	468, 1246
SatI	GCNGC	5 cut(s)	181, 656, 774, 1152, 1202
Sau3AI	GATC	8 cut(s)	305, 391, 478, 674, 928, 1036, 1102, 1111
Sau96I	GGNCC	2 cut(s)	553, 1081
SbfI	CCTGCAGG	1 cut(s)	741
SchI	GAGTC	3 cut(s)	225, 576, 821
ScrFI	CCNGG	2 cut(s)	557, 1233
SdaI	CCTGCAGG	1 cut(s)	741
SduI	GDGCHC	1 cut(s)	272
SfaNI	GCATC	5 cut(s)	184, 391, 481, 1138, 1231
SfcI	CTRYAG	2 cut(s)	737, 904
Sfr274I	CTCGAG	1 cut(s)	564
SinI	GGWCC	1 cut(s)	553
SlaI	CTCGAG	1 cut(s)	564
SmiMI	CAYNNNNRTG	2 cut(s)	387, 849
SmlI	CTYRAG	3 cut(s)	564, 696, 969
SmoI	CTYRAG	3 cut(s)	564, 696, 969
Sse8387I	CCTGCAGG	1 cut(s)	741
Sse9I	AATT	9 cut(s)	10, 32, 82, 169, 370, 747, 760, 792, 895
SsiI	CCGC	3 cut(s)	141, 1202, 1217
SspI	AATATT	1 cut(s)	76
SspMI	CTAG	1 cut(s)	651
StyD4I	CCNGG	2 cut(s)	555, 1231
TaiI	ACGT	3 cut(s)	123, 284, 588
TaqI	TCGA	4 cut(s)	6, 565, 1105, 1221
TasI	AATT	9 cut(s)	10, 32, 82, 169, 370, 747, 760, 792, 895
TatI	WGTACW	1 cut(s)	1191
TauI	GCSGC	1 cut(s)	1204
TfiI	GAWTC	2 cut(s)	944, 1072
Tru1I	TTAA	2 cut(s)	468, 1246
Tru9I	TTAA	2 cut(s)	468, 1246
TscAI	CASTG	4 cut(s)	270, 392, 514, 939
TseFI	GTSAC	2 cut(s)	261, 984
TseI	GCWGC	4 cut(s)	180, 655, 773, 1151
Tsp45I	GTSAC	2 cut(s)	261, 984
TspRI	CASTG	4 cut(s)	270, 392, 514, 939
VpaK11BI	GGWCC	1 cut(s)	553
XapI	RAATTY	4 cut(s)	82, 370, 792, 895
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1048
XhoI	CTCGAG	1 cut(s)	564
XspI	CTAG	1 cut(s)	651
Zsp2I	ATGCAT	2 cut(s)	580, 769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.