Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0008100

Physical Location & Seq

Genomic Coordinates Reverse (-)

6255156 .. 6257516

Gene Structure 2361 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006323

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGAGGACAGACCAGATAAGTAGCGAAAGGAATTTTATTTGGCATCAGTGTGATCATAGCGTTTTCGTGAAAGGTAACCCTGATATGTTGAGGCCAAGGAATGTAAGGGTGGAAGCTGGGTGGCTGTTTAAAGGGGGTGATCGGGGGTCGGATGCAATCTCAGAGCGCAGTGAGAGTGCTAATGAGGATATTTTGATATTCTTCTTCCAGCTGGACCTGGCAACTCGAGTCCAGTATGCATTGAACATGGAAGAGTATGACATTGCACAACAACTGAGAACCAAGCTGGCTGAGGTTGAAGCAGAAGTTGCTAGGCAGCAGGAGGGGAAAAGGGGATCGTCTTCAAAGAGTGAAGCTCAAGATAAGGCTATAAGTCTCATTCGCTTACGGGCAGACCTGCAGGGTGCAATTGAGAGTGAGAATTATGCATTGGCAGCCAAGCTACGGGATGAAATTTCCAAACTGGAGGCAGAGTCATTGGCTATATCAGCCAAAGCTTTGGCACATGAAAATGCAAACTATTCATTTCGTTTGGGACAGAGAGTGAGGCATAAAATTTTTGGCTATAGGGCTGTGGTTTGTGGAATGGATCCAGTGTGCTGTGAATCAAGTTCATGGATGGAAACTGCTCAAGTTGAAAAGTTGTCTCGGGGTTCTAATCAGCCATTTTATCAGGTTTTGGTTGATGTTCATGCAGATCCCAACCTTATGGTGGCTTATGTTGCTGAGGAGAATCTATTGGCCCCTGACCAACCAGACTTGGATCGATTTGATCATCCCTATATTTCCTTCTTATTCTATGGGATGGATGCAGCTGGTGATTTCATCCCTATCAAGCAACTACGCGAGAAGTACAACAGGCCGCGACATGAGATACCGCTCGATGAGGAGCCTGGAGGCGATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009368 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009840 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UVR YccV-like

Protein Analysis

303

Amino Acids

34.24

Weight (kDa)

5.1

Isoelectric Point (pI)

42.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UVR	PF02151	126 - 157	3e-06	UvrB/uvrC motif
YccV-like	PF08755	175 - 271	1.6e-28	Hemimethylated DNA-binding protein YccV like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03390 AT2G03390 AT2G03390 AT2G03390 AT2G03390 AT2G03390 AT2G03390
fragaria_vesca	FvH4_4g30500 FvH4_4g30500
malus_domestica	MD16G1064900.v1.1
prunus_persica	Prupe.1G282000_v2.0.a1
pyrus_communis	pycom13g05840 pycom16g05670
rosa_chinensis	RchiOBHm_Chr4g0438871
rosa_laevigata	RLG00000006323
rosa_multiflora	Rmu_co8274455.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379890
rosa_rugosa	Rorug04G0313900.1
rosa_samantha	Rh4AG364700 Rh4BG375800 Rh4CG389900 Rh4DG370500
rosa_wichuraiana	Rw0G007280 Rw0G016830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	405
AccBSI	CCGCTC	1 cut(s)	880
AccII	CGCG	2 cut(s)	846, 865
AciI	CCGC	2 cut(s)	863, 878
AclWI	GGATC	5 cut(s)	343, 584, 597, 692, 771
AcsI	RAATTY	3 cut(s)	31, 453, 555
AfaI	GTAC	1 cut(s)	854
AfiI	CCNNNNNNNGG	2 cut(s)	444, 712
AgsI	TTSAA	4 cut(s)	244, 299, 345, 638
AjnI	CCWGG	2 cut(s)	216, 892
AjuI	GAANNNNNNNTTGG	2 cut(s)	413, 445
AluBI	AGCT	7 cut(s)	116, 211, 286, 356, 442, 497, 815
AluI	AGCT	7 cut(s)	116, 211, 286, 356, 442, 497, 815
Alw26I	GTCTC	2 cut(s)	380, 651
AlwI	GGATC	5 cut(s)	343, 584, 597, 692, 771
Ama87I	CYCGRG	2 cut(s)	225, 648
AoxI	GGCC	3 cut(s)	92, 741, 860
ApeKI	GCWGC	3 cut(s)	316, 434, 812
ApoI	RAATTY	3 cut(s)	31, 453, 555
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	2 cut(s)	214, 742
AsuHPI	GGTGA	2 cut(s)	149, 830
AvaI	CYCGRG	2 cut(s)	225, 648
AvaII	GGWCC	1 cut(s)	214
BamHI	GGATCC	1 cut(s)	589
BbsI	GAAGAC	1 cut(s)	333
BbvCI	CCTCAGC	2 cut(s)	291, 726
BbvI	GCAGC	3 cut(s)	328, 446, 824
BccI	CCATC	2 cut(s)	613, 799
BciT130I	CCWGG	2 cut(s)	218, 894
BclI	TGATCA	2 cut(s)	52, 772
BcoDI	GTCTC	2 cut(s)	380, 651
BfaI	CTAG	1 cut(s)	312
BfmI	CTRYAG	2 cut(s)	398, 565
BfuAI	ACCTGC	1 cut(s)	405
BisI	GCNGC	4 cut(s)	317, 435, 813, 863
BlsI	GCNGC	4 cut(s)	318, 436, 814, 864
Bme1390I	CCNGG	2 cut(s)	218, 894
Bme18I	GGWCC	1 cut(s)	214
BmeT110I	CYCGRG	2 cut(s)	225, 648
BmgT120I	GGNCC	2 cut(s)	214, 742
BmiI	GGNNCC	3 cut(s)	591, 744, 891
BmrFI	CCNGG	2 cut(s)	218, 894
BmsI	GCATC	4 cut(s)	52, 142, 799, 892
BpiI	GAAGAC	1 cut(s)	333
BplI	GAGNNNNNCTC	2 cut(s)	340, 372
BpmI	CTGGAG	1 cut(s)	485
Bpu10I	CCTNAGC	2 cut(s)	291, 726
BpuEI	CTTGAG	2 cut(s)	342, 615
Bsa29I	ATCGAT	1 cut(s)	766
BsaJI	CCNNGG	1 cut(s)	95
BsaXI	ACNNNNNCTCC	2 cut(s)	458, 488
Bsc4I	CCNNNNNNNGG	2 cut(s)	444, 712
Bse1I	ACTGG	3 cut(s)	232, 468, 593
Bse3DI	GCAATG	1 cut(s)	261
BseBI	CCWGG	2 cut(s)	218, 894
BseCI	ATCGAT	1 cut(s)	766
BseDI	CCNNGG	1 cut(s)	95
BseGI	GGATG	7 cut(s)	157, 454, 624, 775, 810, 814, 825
BseLI	CCNNNNNNNGG	2 cut(s)	444, 712
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	4 cut(s)	174, 266, 282, 717
BseNI	ACTGG	3 cut(s)	232, 468, 593
BseRI	GAGGAG	2 cut(s)	743, 902
BseXI	GCAGC	3 cut(s)	328, 446, 824
BseYI	CCCAGC	1 cut(s)	116
Bsh1236I	CGCG	2 cut(s)	846, 865
BshFI	GGCC	3 cut(s)	94, 743, 862
BshVI	ATCGAT	1 cut(s)	766
BsiHKCI	CYCGRG	2 cut(s)	225, 648
BslFI	GGGAC	1 cut(s)	549
BslI	CCNNNNNNNGG	2 cut(s)	444, 712
BsmAI	GTCTC	2 cut(s)	380, 651
BsmFI	GGGAC	1 cut(s)	549
BsnI	GGCC	3 cut(s)	94, 743, 862
BsoBI	CYCGRG	2 cut(s)	225, 648
Bsp143I	GATC	7 cut(s)	52, 139, 335, 589, 697, 763, 772
BspACI	CCGC	2 cut(s)	863, 878
BspANI	GGCC	3 cut(s)	94, 743, 862
BspCNI	CTCAG	4 cut(s)	173, 267, 283, 718
BspDI	ATCGAT	1 cut(s)	766
BspFNI	CGCG	2 cut(s)	846, 865
BspLI	GGNNCC	3 cut(s)	591, 744, 891
BspMAI	CTGCAG	1 cut(s)	402
BspMI	ACCTGC	1 cut(s)	405
BspPI	GGATC	5 cut(s)	343, 584, 597, 692, 771
BsrBI	CCGCTC	1 cut(s)	880
BsrDI	GCAATG	1 cut(s)	261
BsrI	ACTGG	3 cut(s)	232, 468, 593
BssECI	CCNNGG	1 cut(s)	95
BssMI	GATC	7 cut(s)	52, 139, 335, 589, 697, 763, 772
BssT1I	CCWWGG	1 cut(s)	95
Bst2UI	CCWGG	2 cut(s)	218, 894
Bst6I	CTCTTC	1 cut(s)	246
BstAPI	GCANNNNNTGC	1 cut(s)	308
BstC8I	GCNNGC	1 cut(s)	288
BstDEI	CTNAG	5 cut(s)	160, 275, 291, 726, 906
BstEII	GGTNACC	1 cut(s)	74
BstF5I	GGATG	7 cut(s)	157, 454, 624, 775, 810, 814, 825
BstFNI	CGCG	2 cut(s)	846, 865
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	7 cut(s)	55, 142, 338, 592, 700, 766, 775
BstMAI	GTCTC	2 cut(s)	380, 651
BstMBI	GATC	7 cut(s)	52, 139, 335, 589, 697, 763, 772
BstMWI	GCNNNNNNNGC	4 cut(s)	308, 434, 488, 722
BstNI	CCWGG	2 cut(s)	218, 894
BstPI	GGTNACC	1 cut(s)	74
BstSCI	CCNGG	2 cut(s)	216, 892
BstSFI	CTRYAG	2 cut(s)	398, 565
BstUI	CGCG	2 cut(s)	846, 865
BstV1I	GCAGC	3 cut(s)	328, 446, 824
BstV2I	GAAGAC	1 cut(s)	333
BstX2I	RGATCY	2 cut(s)	589, 697
BstXI	CCANNNNNNTGG	2 cut(s)	499, 709
BstYI	RGATCY	2 cut(s)	589, 697
Bsu15I	ATCGAT	1 cut(s)	766
BsuRI	GGCC	3 cut(s)	94, 743, 862
BsuTUI	ATCGAT	1 cut(s)	766
BtsCI	GGATG	7 cut(s)	157, 454, 624, 775, 810, 814, 825
BtsI	GCAGTG	1 cut(s)	175
BtsIMutI	CAGTG	3 cut(s)	53, 175, 600
BveI	ACCTGC	1 cut(s)	405
Cac8I	GCNNGC	1 cut(s)	288
CfoI	GCGC	1 cut(s)	168
Cfr13I	GGNCC	2 cut(s)	214, 742
ClaI	ATCGAT	1 cut(s)	766
Csp6I	GTAC	1 cut(s)	853
CviAII	CATG	5 cut(s)	247, 506, 615, 692, 869
CviQI	GTAC	1 cut(s)	853
DdeI	CTNAG	5 cut(s)	160, 275, 291, 726, 906
DpnI	GATC	7 cut(s)	54, 141, 337, 591, 699, 765, 774
DpnII	GATC	7 cut(s)	52, 139, 335, 589, 697, 763, 772
DraI	TTTAAA	1 cut(s)	130
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
Eco130I	CCWWGG	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	214
Eco88I	CYCGRG	2 cut(s)	225, 648
Eco91I	GGTNACC	1 cut(s)	74
EcoO65I	GGTNACC	1 cut(s)	74
EcoRII	CCWGG	2 cut(s)	216, 892
EcoT14I	CCWWGG	1 cut(s)	95
EcoT22I	ATGCAT	2 cut(s)	241, 430
ErhI	CCWWGG	1 cut(s)	95
FaeI	CATG	5 cut(s)	250, 509, 618, 695, 872
FaqI	GGGAC	1 cut(s)	549
FatI	CATG	5 cut(s)	246, 505, 614, 691, 868
FbaI	TGATCA	2 cut(s)	52, 772
Fnu4HI	GCNGC	4 cut(s)	317, 435, 813, 863
FokI	GGATG	7 cut(s)	164, 461, 631, 762, 812, 817, 821
Fsp4HI	GCNGC	4 cut(s)	317, 435, 813, 863
FspBI	CTAG	1 cut(s)	312
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	4 cut(s)	317, 435, 813, 863
GsaI	CCCAGC	1 cut(s)	120
GsuI	CTGGAG	1 cut(s)	485
HaeIII	GGCC	3 cut(s)	94, 743, 862
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	5 cut(s)	250, 509, 618, 695, 872
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HindIII	AAGCTT	1 cut(s)	495
HinfI	GANTC	4 cut(s)	228, 473, 605, 733
HphI	GGTGA	2 cut(s)	149, 830
Hpy188I	TCNGA	2 cut(s)	151, 163
Hpy188III	TCNNGA	2 cut(s)	67, 359
HpyAV	CCTTC	1 cut(s)	799
HpyCH4V	TGCA	9 cut(s)	155, 239, 266, 400, 407, 428, 515, 695, 812
HpyF10VI	GCNNNNNNNGC	4 cut(s)	308, 434, 488, 722
HpyF3I	CTNAG	5 cut(s)	160, 275, 291, 726, 906
Hsp92II	CATG	5 cut(s)	250, 509, 618, 695, 872
HspAI	GCGC	1 cut(s)	166
Ksp22I	TGATCA	2 cut(s)	52, 772
Kzo9I	GATC	7 cut(s)	52, 139, 335, 589, 697, 763, 772
LmnI	GCTCC	1 cut(s)	889
Lsp1109I	GCAGC	3 cut(s)	328, 446, 824
LweI	GCATC	4 cut(s)	52, 142, 799, 892
MaeI	CTAG	1 cut(s)	312
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	7 cut(s)	54, 141, 337, 591, 699, 765, 774
MbiI	CCGCTC	1 cut(s)	880
MboI	GATC	7 cut(s)	52, 139, 335, 589, 697, 763, 772
MboII	GAAGA	4 cut(s)	193, 196, 263, 333
MfeI	CAATTG	1 cut(s)	408
MflI	RGATCY	2 cut(s)	589, 697
MluCI	AATT	5 cut(s)	31, 408, 421, 453, 555
MlyI	GAGTC	2 cut(s)	237, 482
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	9 cut(s)	84, 178, 286, 316, 460, 540, 721, 880, 890
Mph1103I	ATGCAT	2 cut(s)	241, 430
MseI	TTAA	1 cut(s)	129
MslI	CAYNNNNRTG	2 cut(s)	48, 510
MspA1I	CMGCKG	2 cut(s)	211, 815
MspR9I	CCNGG	2 cut(s)	218, 894
MunI	CAATTG	1 cut(s)	408
MvaI	CCWGG	2 cut(s)	218, 894
MvnI	CGCG	2 cut(s)	846, 865
MwoI	GCNNNNNNNGC	4 cut(s)	308, 434, 488, 722
NdeII	GATC	7 cut(s)	52, 139, 335, 589, 697, 763, 772
NlaIII	CATG	5 cut(s)	250, 509, 618, 695, 872
NlaIV	GGNNCC	3 cut(s)	591, 744, 891
NsiI	ATGCAT	2 cut(s)	241, 430
PaeR7I	CTCGAG	1 cut(s)	225
PfeI	GAWTC	2 cut(s)	605, 733
PkrI	GCNGC	4 cut(s)	318, 436, 814, 864
PleI	GAGTC	2 cut(s)	236, 481
PpsI	GAGTC	2 cut(s)	236, 481
Psp6I	CCWGG	2 cut(s)	216, 892
PspEI	GGTNACC	1 cut(s)	74
PspFI	CCCAGC	1 cut(s)	116
PspGI	CCWGG	2 cut(s)	216, 892
PspN4I	GGNNCC	3 cut(s)	591, 744, 891
PspPI	GGNCC	2 cut(s)	214, 742
PspXI	VCTCGAGB	1 cut(s)	225
PstI	CTGCAG	1 cut(s)	402
PsuI	RGATCY	2 cut(s)	589, 697
PvuII	CAGCTG	2 cut(s)	211, 815
RsaI	GTAC	1 cut(s)	854
RsaNI	GTAC	1 cut(s)	853
RseI	CAYNNNNRTG	2 cut(s)	48, 510
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	4 cut(s)	317, 435, 813, 863
Sau3AI	GATC	7 cut(s)	52, 139, 335, 589, 697, 763, 772
Sau96I	GGNCC	2 cut(s)	214, 742
SbfI	CCTGCAGG	1 cut(s)	402
SchI	GAGTC	2 cut(s)	237, 482
ScrFI	CCNGG	2 cut(s)	218, 894
SdaI	CCTGCAGG	1 cut(s)	402
SfaNI	GCATC	4 cut(s)	52, 142, 799, 892
SfcI	CTRYAG	2 cut(s)	398, 565
Sfr274I	CTCGAG	1 cut(s)	225
SinI	GGWCC	1 cut(s)	214
SlaI	CTCGAG	1 cut(s)	225
SmiMI	CAYNNNNRTG	2 cut(s)	48, 510
SmlI	CTYRAG	3 cut(s)	225, 357, 630
SmoI	CTYRAG	3 cut(s)	225, 357, 630
Sse8387I	CCTGCAGG	1 cut(s)	402
Sse9I	AATT	5 cut(s)	31, 408, 421, 453, 555
SsiI	CCGC	2 cut(s)	863, 878
SspMI	CTAG	1 cut(s)	312
StyD4I	CCNGG	2 cut(s)	216, 892
StyI	CCWWGG	1 cut(s)	95
TaqI	TCGA	3 cut(s)	226, 766, 882
TasI	AATT	5 cut(s)	31, 408, 421, 453, 555
TatI	WGTACW	1 cut(s)	852
TauI	GCSGC	1 cut(s)	865
TfiI	GAWTC	2 cut(s)	605, 733
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TscAI	CASTG	3 cut(s)	53, 175, 600
TseI	GCWGC	3 cut(s)	316, 434, 812
TspDTI	ATGAA	6 cut(s)	465, 513, 522, 603, 680, 814
TspRI	CASTG	3 cut(s)	53, 175, 600
VpaK11BI	GGWCC	1 cut(s)	214
XapI	RAATTY	3 cut(s)	31, 453, 555
XcmI	CCANNNNNNNNNTGG	1 cut(s)	709
XhoI	CTCGAG	1 cut(s)	225
XspI	CTAG	1 cut(s)	312
Zsp2I	ATGCAT	2 cut(s)	241, 430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.