Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008100

Physical Location & Seq

Genomic Coordinates Forward (+)

30080972 .. 30083974

Gene Structure 3003 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g30500.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGTGCAAGGTTTGTCACTGAGCACTCTGGCTACGTCGTGTAGCAGCAGTGTTTGTGGATCAATGCCTTCATGGAGGAAGCATTTTGGAGTAATGAGGAAAGAGCTGATAAGTGGTGAAAGGAGTTTTGTGTGGCATCAGTGTGATCATAGTGTATTCGTGAAAGGTAACCCTGATATGTTGAGGCAAAGGAATGTAAGGGTGGAAGCTGGGTGGCTGTTTAAAGGGGGTGACCGGGGGTCAGATGCCATCTCAGAGCGAAGTGAGAGTGCTAATGAGGATATTTTGATATTCTTCTTCCAGTTGGACCTGGCAACTCGAGTACAGTATGCATTGAATATGGAAGAGTATGACATTGCACAACAACTGAGAACCAAGCTGGCTGAGGTTGAAGCAGAAGTTGCTAAGCAGCAGGAGGGAAAAAGGGGATCATCTTCAAGAAGTGAAGCTCAAGATAAGGCCATAAGTATCATTCGCTTACGTGCAGACTTGCAAGGTGCAATTGAAAGTGAGAATTATGCATTGGCAGCCAAGCTACGGGATGAAATTTCAAAATTGGAGGCAGAATCATTGGCTGTATCAGCCAAAGCTTTGGCACATGAAAATGCAAACTATTCATTTCGTTTGGGACAGAGAGTGAGGCATCAAAATTTTGGTTATCGGGCTGTGGTTTGTGGAATGGATCCAGTGTGCTGTGAATCAAGTTCATGGATGGAAACTGCTCAAGTTCAAAAGTTGTCTCGGGGTTCTAATCAGCCATTTTATCAGGTTTTGGTTGATGTGCATGCAGACCCCAACCTTCTGGTGGCTTATGGTAATCTATATCTGTTTGAACCAATTGGTTCTCAAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009368 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009840 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UVR YccV-like

Protein Analysis

285

Amino Acids

31.71

Weight (kDa)

6.11

Isoelectric Point (pI)

43.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UVR	PF02151	156 - 188	1.5e-06	UvrB/uvrC motif
YccV-like	PF08755	206 - 271	3.8e-20	Hemimethylated DNA-binding protein YccV like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03390 AT2G03390 AT2G03390 AT2G03390 AT2G03390 AT2G03390 AT2G03390
fragaria_vesca	FvH4_4g30500 FvH4_4g30500
malus_domestica	MD16G1064900.v1.1
prunus_persica	Prupe.1G282000_v2.0.a1
pyrus_communis	pycom13g05840 pycom16g05670
rosa_chinensis	RchiOBHm_Chr4g0438871
rosa_laevigata	RLG00000006323
rosa_multiflora	Rmu_co8274455.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379890
rosa_rugosa	Rorug04G0313900.1
rosa_samantha	Rh4AG364700 Rh4BG375800 Rh4CG389900 Rh4DG370500
rosa_wichuraiana	Rw0G007280 Rw0G016830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	67, 436, 677, 690
AcsI	RAATTY	2 cut(s)	546, 649
AfaI	GTAC	1 cut(s)	324
AfiI	CCNNNNNNNGG	2 cut(s)	537, 805
AgsI	TTSAA	7 cut(s)	337, 392, 438, 506, 552, 731, 833
AhdI	GACNNNNNGTC	1 cut(s)	238
AjnI	CCWGG	1 cut(s)	309
AjuI	GAANNNNNNNTTGG	2 cut(s)	506, 538
AluBI	AGCT	6 cut(s)	106, 209, 379, 449, 535, 590
AluI	AGCT	6 cut(s)	106, 209, 379, 449, 535, 590
Alw21I	GWGCWC	1 cut(s)	26
Alw26I	GTCTC	1 cut(s)	744
AlwI	GGATC	4 cut(s)	67, 436, 677, 690
Ama87I	CYCGRG	2 cut(s)	318, 741
AoxI	GGCC	1 cut(s)	459
ApeKI	GCWGC	3 cut(s)	45, 409, 527
ApoI	RAATTY	2 cut(s)	546, 649
AspS9I	GGNCC	1 cut(s)	307
AsuC2I	CCSGG	1 cut(s)	236
AsuHPI	GGTGA	2 cut(s)	128, 242
AvaI	CYCGRG	2 cut(s)	318, 741
AvaII	GGWCC	1 cut(s)	307
BamHI	GGATCC	1 cut(s)	682
Bbv12I	GWGCWC	1 cut(s)	26
BbvCI	CCTCAGC	1 cut(s)	384
BbvI	GCAGC	3 cut(s)	57, 421, 539
BccI	CCATC	2 cut(s)	257, 706
BciT130I	CCWGG	1 cut(s)	311
BclI	TGATCA	1 cut(s)	145
BcnI	CCSGG	1 cut(s)	236
BcoDI	GTCTC	1 cut(s)	744
BisI	GCNGC	3 cut(s)	46, 410, 528
BlpI	GCTNAGC	1 cut(s)	405
BlsI	GCNGC	3 cut(s)	47, 411, 529
Bme1390I	CCNGG	2 cut(s)	236, 311
Bme18I	GGWCC	1 cut(s)	307
BmeRI	GACNNNNNGTC	1 cut(s)	238
BmeT110I	CYCGRG	2 cut(s)	318, 741
BmgT120I	GGNCC	1 cut(s)	307
BmiI	GGNNCC	1 cut(s)	684
BmrFI	CCNGG	2 cut(s)	236, 311
BmsI	GCATC	3 cut(s)	145, 235, 652
Bpu10I	CCTNAGC	1 cut(s)	384
Bpu1102I	GCTNAGC	1 cut(s)	405
BpuEI	CTTGAG	2 cut(s)	435, 708
BpuMI	CCSGG	1 cut(s)	236
BsaAI	YACGTR	1 cut(s)	482
BsaJI	CCNNGG	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	2 cut(s)	537, 805
Bse1I	ACTGG	2 cut(s)	301, 686
Bse3DI	GCAATG	1 cut(s)	354
BseBI	CCWGG	1 cut(s)	311
BseDI	CCNNGG	1 cut(s)	235
BseGI	GGATG	2 cut(s)	547, 717
BseLI	CCNNNNNNNGG	2 cut(s)	537, 805
BseMI	GCAATG	1 cut(s)	354
BseMII	CTCAG	4 cut(s)	11, 267, 359, 375
BseNI	ACTGG	2 cut(s)	301, 686
BseXI	GCAGC	3 cut(s)	57, 421, 539
BseYI	CCCAGC	1 cut(s)	209
BsgI	GTGCAG	1 cut(s)	504
BshFI	GGCC	1 cut(s)	461
BsiHKAI	GWGCWC	1 cut(s)	26
BsiHKCI	CYCGRG	2 cut(s)	318, 741
BsiSI	CCGG	1 cut(s)	235
BslFI	GGGAC	1 cut(s)	642
BslI	CCNNNNNNNGG	2 cut(s)	537, 805
BsmAI	GTCTC	1 cut(s)	744
BsmFI	GGGAC	1 cut(s)	642
BsnI	GGCC	1 cut(s)	461
BsoBI	CYCGRG	2 cut(s)	318, 741
Bsp1286I	GDGCHC	1 cut(s)	26
Bsp143I	GATC	4 cut(s)	59, 145, 428, 682
Bsp1720I	GCTNAGC	1 cut(s)	405
BspANI	GGCC	1 cut(s)	461
BspCNI	CTCAG	4 cut(s)	12, 266, 360, 376
BspLI	GGNNCC	1 cut(s)	684
BspPI	GGATC	4 cut(s)	67, 436, 677, 690
BsrDI	GCAATG	1 cut(s)	354
BsrI	ACTGG	2 cut(s)	301, 686
BssECI	CCNNGG	1 cut(s)	235
BssMI	GATC	4 cut(s)	59, 145, 428, 682
Bst2UI	CCWGG	1 cut(s)	311
Bst4CI	ACNGT	1 cut(s)	327
Bst6I	CTCTTC	1 cut(s)	339
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstBAI	YACGTR	1 cut(s)	482
BstC8I	GCNNGC	2 cut(s)	381, 786
BstDEI	CTNAG	5 cut(s)	20, 253, 368, 384, 405
BstEII	GGTNACC	2 cut(s)	167, 230
BstF5I	GGATG	2 cut(s)	547, 717
BstKTI	GATC	4 cut(s)	62, 148, 431, 685
BstMAI	GTCTC	1 cut(s)	744
BstMBI	GATC	4 cut(s)	59, 145, 428, 682
BstMWI	GCNNNNNNNGC	3 cut(s)	401, 527, 581
BstNI	CCWGG	1 cut(s)	311
BstNSI	RCATGY	1 cut(s)	788
BstPI	GGTNACC	2 cut(s)	167, 230
BstSCI	CCNGG	2 cut(s)	234, 309
BstV1I	GCAGC	3 cut(s)	57, 421, 539
BstX2I	RGATCY	1 cut(s)	682
BstXI	CCANNNNNNTGG	2 cut(s)	592, 802
BstYI	RGATCY	1 cut(s)	682
BsuRI	GGCC	1 cut(s)	461
BtsCI	GGATG	2 cut(s)	547, 717
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	4 cut(s)	17, 55, 146, 693
Cac8I	GCNNGC	2 cut(s)	381, 786
Cfr13I	GGNCC	1 cut(s)	307
Csp6I	GTAC	1 cut(s)	323
CviAII	CATG	4 cut(s)	72, 599, 708, 785
CviQI	GTAC	1 cut(s)	323
DdeI	CTNAG	5 cut(s)	20, 253, 368, 384, 405
DpnI	GATC	4 cut(s)	61, 147, 430, 684
DpnII	GATC	4 cut(s)	59, 145, 428, 682
DraI	TTTAAA	1 cut(s)	223
DriI	GACNNNNNGTC	1 cut(s)	238
Eam1104I	CTCTTC	1 cut(s)	339
Eam1105I	GACNNNNNGTC	1 cut(s)	238
EarI	CTCTTC	1 cut(s)	339
Eco47I	GGWCC	1 cut(s)	307
Eco88I	CYCGRG	2 cut(s)	318, 741
Eco91I	GGTNACC	2 cut(s)	167, 230
EcoO65I	GGTNACC	2 cut(s)	167, 230
EcoRII	CCWGG	1 cut(s)	309
EcoT22I	ATGCAT	2 cut(s)	334, 523
FaeI	CATG	4 cut(s)	75, 602, 711, 788
FaqI	GGGAC	1 cut(s)	642
FatI	CATG	4 cut(s)	71, 598, 707, 784
FbaI	TGATCA	1 cut(s)	145
Fnu4HI	GCNGC	3 cut(s)	46, 410, 528
FokI	GGATG	2 cut(s)	554, 724
Fsp4HI	GCNGC	3 cut(s)	46, 410, 528
GluI	GCNGC	3 cut(s)	46, 410, 528
GsaI	CCCAGC	1 cut(s)	213
HaeIII	GGCC	1 cut(s)	461
HapII	CCGG	1 cut(s)	235
Hin1II	CATG	4 cut(s)	75, 602, 711, 788
HindIII	AAGCTT	1 cut(s)	588
HinfI	GANTC	2 cut(s)	566, 698
HpaII	CCGG	1 cut(s)	235
HphI	GGTGA	2 cut(s)	128, 242
Hpy188I	TCNGA	2 cut(s)	244, 256
Hpy188III	TCNNGA	3 cut(s)	160, 438, 452
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	2 cut(s)	78, 809
HpyCH4III	ACNGT	1 cut(s)	327
HpyCH4IV	ACGT	2 cut(s)	35, 481
HpyF10VI	GCNNNNNNNGC	3 cut(s)	401, 527, 581
HpyF3I	CTNAG	5 cut(s)	20, 253, 368, 384, 405
HpySE526I	ACGT	2 cut(s)	35, 481
Hsp92II	CATG	4 cut(s)	75, 602, 711, 788
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	4 cut(s)	59, 145, 428, 682
Lsp1109I	GCAGC	3 cut(s)	57, 421, 539
LweI	GCATC	3 cut(s)	145, 235, 652
MaeII	ACGT	2 cut(s)	35, 481
MaeIII	GTNAC	3 cut(s)	15, 167, 230
MalI	GATC	4 cut(s)	61, 147, 430, 684
MboI	GATC	4 cut(s)	59, 145, 428, 682
MboII	GAAGA	4 cut(s)	286, 289, 356, 426
MfeI	CAATTG	2 cut(s)	501, 837
MflI	RGATCY	1 cut(s)	682
MhlI	GDGCHC	1 cut(s)	26
MluCI	AATT	6 cut(s)	501, 514, 546, 554, 649, 837
MmeI	TCCRAC	1 cut(s)	285
MnlI	CCTC	8 cut(s)	69, 90, 177, 271, 379, 409, 553, 633
Mph1103I	ATGCAT	2 cut(s)	334, 523
MseI	TTAA	1 cut(s)	222
MslI	CAYNNNNRTG	2 cut(s)	141, 603
MspI	CCGG	1 cut(s)	235
MspR9I	CCNGG	2 cut(s)	236, 311
MunI	CAATTG	2 cut(s)	501, 837
MvaI	CCWGG	1 cut(s)	311
MwoI	GCNNNNNNNGC	3 cut(s)	401, 527, 581
NciI	CCSGG	1 cut(s)	236
NdeII	GATC	4 cut(s)	59, 145, 428, 682
NlaIII	CATG	4 cut(s)	75, 602, 711, 788
NlaIV	GGNNCC	1 cut(s)	684
NmuCI	GTSAC	2 cut(s)	15, 230
NsiI	ATGCAT	2 cut(s)	334, 523
NspI	RCATGY	1 cut(s)	788
PaeI	GCATGC	1 cut(s)	788
PaeR7I	CTCGAG	1 cut(s)	318
PfeI	GAWTC	2 cut(s)	566, 698
PkrI	GCNGC	3 cut(s)	47, 411, 529
Ppu21I	YACGTR	1 cut(s)	482
Psp6I	CCWGG	1 cut(s)	309
PspEI	GGTNACC	2 cut(s)	167, 230
PspFI	CCCAGC	1 cut(s)	209
PspGI	CCWGG	1 cut(s)	309
PspN4I	GGNNCC	1 cut(s)	684
PspPI	GGNCC	1 cut(s)	307
PspXI	VCTCGAGB	1 cut(s)	318
PsuI	RGATCY	1 cut(s)	682
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
RseI	CAYNNNNRTG	2 cut(s)	141, 603
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	3 cut(s)	46, 410, 528
Sau3AI	GATC	4 cut(s)	59, 145, 428, 682
Sau96I	GGNCC	1 cut(s)	307
ScrFI	CCNGG	2 cut(s)	236, 311
SduI	GDGCHC	1 cut(s)	26
SfaNI	GCATC	3 cut(s)	145, 235, 652
Sfr274I	CTCGAG	1 cut(s)	318
SinI	GGWCC	1 cut(s)	307
SlaI	CTCGAG	1 cut(s)	318
SmiMI	CAYNNNNRTG	2 cut(s)	141, 603
SmlI	CTYRAG	3 cut(s)	318, 450, 723
SmoI	CTYRAG	3 cut(s)	318, 450, 723
SphI	GCATGC	1 cut(s)	788
Sse9I	AATT	6 cut(s)	501, 514, 546, 554, 649, 837
StyD4I	CCNGG	2 cut(s)	234, 309
TaaI	ACNGT	1 cut(s)	327
TaiI	ACGT	2 cut(s)	38, 484
TaqI	TCGA	1 cut(s)	319
TasI	AATT	6 cut(s)	501, 514, 546, 554, 649, 837
TatI	WGTACW	1 cut(s)	322
TfiI	GAWTC	2 cut(s)	566, 698
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	4 cut(s)	24, 55, 146, 693
TseFI	GTSAC	2 cut(s)	15, 230
TseI	GCWGC	3 cut(s)	45, 409, 527
Tsp45I	GTSAC	2 cut(s)	15, 230
TspDTI	ATGAA	5 cut(s)	60, 558, 606, 615, 696
TspRI	CASTG	4 cut(s)	24, 55, 146, 693
VpaK11BI	GGWCC	1 cut(s)	307
XapI	RAATTY	2 cut(s)	546, 649
XceI	RCATGY	1 cut(s)	788
XcmI	CCANNNNNNNNNTGG	1 cut(s)	802
XhoI	CTCGAG	1 cut(s)	318
Zsp2I	ATGCAT	2 cut(s)	334, 523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.