Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8274455.1

Orthogroup ID

OG0008100

Physical Location & Seq

Genomic Coordinates Reverse (-)

477 .. 835

Gene Structure 359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8274455.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 209 bp

gttggttttcttgtgctgcagttgctgaggagaatctattggcccctgacaaaccagacttggatcgatttgatcatccctatatttccttcttattctatgggatggatgcagctggtgatttcatccctatcaagcaactacgcgagaagtacaacaggccgcgacatgaaataccgctcgatgaggagcctggacgcgatgcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009368 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009840 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UVR YccV-like

Protein Analysis

68

Amino Acids

7.91

Weight (kDa)

4.64

Isoelectric Point (pI)

39.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03390 AT2G03390 AT2G03390 AT2G03390 AT2G03390 AT2G03390 AT2G03390
fragaria_vesca	FvH4_4g30500 FvH4_4g30500
malus_domestica	MD16G1064900.v1.1
prunus_persica	Prupe.1G282000_v2.0.a1
pyrus_communis	pycom13g05840 pycom16g05670
rosa_chinensis	RchiOBHm_Chr4g0438871
rosa_laevigata	RLG00000006323
rosa_multiflora	Rmu_co8274455.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379890
rosa_rugosa	Rorug04G0313900.1
rosa_samantha	Rh4AG364700 Rh4BG375800 Rh4CG389900 Rh4DG370500
rosa_wichuraiana	Rw0G007280 Rw0G016830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	180
AccII	CGCG	3 cut(s)	146, 165, 200
AciI	CCGC	2 cut(s)	163, 178
AclWI	GGATC	1 cut(s)	71
AfaI	GTAC	1 cut(s)	154
AjnI	CCWGG	1 cut(s)	192
AluBI	AGCT	1 cut(s)	115
AluI	AGCT	1 cut(s)	115
AlwI	GGATC	1 cut(s)	71
AlwNI	CAGNNNCTG	1 cut(s)	25
AoxI	GGCC	2 cut(s)	41, 160
ApeKI	GCWGC	2 cut(s)	16, 112
AspS9I	GGNCC	1 cut(s)	42
AsuHPI	GGTGA	1 cut(s)	130
BbvCI	CCTCAGC	1 cut(s)	26
BbvI	GCAGC	2 cut(s)	3, 124
BccI	CCATC	1 cut(s)	99
BciT130I	CCWGG	1 cut(s)	194
BclI	TGATCA	1 cut(s)	72
BfmI	CTRYAG	1 cut(s)	17
BisI	GCNGC	3 cut(s)	17, 113, 163
BlsI	GCNGC	3 cut(s)	18, 114, 164
Bme1390I	CCNGG	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	42
BmiI	GGNNCC	2 cut(s)	44, 191
BmrFI	CCNGG	1 cut(s)	194
BmsI	GCATC	2 cut(s)	99, 192
Bpu10I	CCTNAGC	1 cut(s)	26
Bsa29I	ATCGAT	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	194
BseCI	ATCGAT	1 cut(s)	66
BseGI	GGATG	4 cut(s)	75, 110, 114, 125
BseMII	CTCAG	1 cut(s)	17
BseRI	GAGGAG	2 cut(s)	43, 202
BseXI	GCAGC	2 cut(s)	3, 124
Bsh1236I	CGCG	3 cut(s)	146, 165, 200
BshFI	GGCC	2 cut(s)	43, 162
BshVI	ATCGAT	1 cut(s)	66
BsnI	GGCC	2 cut(s)	43, 162
Bsp143I	GATC	2 cut(s)	63, 72
BspACI	CCGC	2 cut(s)	163, 178
BspANI	GGCC	2 cut(s)	43, 162
BspCNI	CTCAG	1 cut(s)	18
BspDI	ATCGAT	1 cut(s)	66
BspFNI	CGCG	3 cut(s)	146, 165, 200
BspLI	GGNNCC	2 cut(s)	44, 191
BspMAI	CTGCAG	1 cut(s)	21
BspPI	GGATC	1 cut(s)	71
BsrBI	CCGCTC	1 cut(s)	180
BssMI	GATC	2 cut(s)	63, 72
Bst2UI	CCWGG	1 cut(s)	194
BstDEI	CTNAG	2 cut(s)	26, 206
BstF5I	GGATG	4 cut(s)	75, 110, 114, 125
BstFNI	CGCG	3 cut(s)	146, 165, 200
BstKTI	GATC	2 cut(s)	66, 75
BstMBI	GATC	2 cut(s)	63, 72
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BstNI	CCWGG	1 cut(s)	194
BstSCI	CCNGG	1 cut(s)	192
BstSFI	CTRYAG	1 cut(s)	17
BstUI	CGCG	3 cut(s)	146, 165, 200
BstV1I	GCAGC	2 cut(s)	3, 124
Bsu15I	ATCGAT	1 cut(s)	66
BsuRI	GGCC	2 cut(s)	43, 162
BsuTUI	ATCGAT	1 cut(s)	66
BtsCI	GGATG	4 cut(s)	75, 110, 114, 125
CaiI	CAGNNNCTG	1 cut(s)	25
Cfr13I	GGNCC	1 cut(s)	42
ClaI	ATCGAT	1 cut(s)	66
Csp6I	GTAC	1 cut(s)	153
CviAII	CATG	1 cut(s)	169
CviJI	RGCY	4 cut(s)	43, 115, 162, 192
CviKI_1	RGCY	4 cut(s)	43, 115, 162, 192
CviQI	GTAC	1 cut(s)	153
DdeI	CTNAG	2 cut(s)	26, 206
DpnI	GATC	2 cut(s)	65, 74
DpnII	GATC	2 cut(s)	63, 72
EcoRII	CCWGG	1 cut(s)	192
FaeI	CATG	1 cut(s)	172
FaiI	YATR	3 cut(s)	83, 101, 170
FatI	CATG	1 cut(s)	168
FbaI	TGATCA	1 cut(s)	72
Fnu4HI	GCNGC	3 cut(s)	17, 113, 163
FokI	GGATG	4 cut(s)	62, 112, 117, 121
Fsp4HI	GCNGC	3 cut(s)	17, 113, 163
GluI	GCNGC	3 cut(s)	17, 113, 163
HaeIII	GGCC	2 cut(s)	43, 162
Hin1II	CATG	1 cut(s)	172
HinfI	GANTC	1 cut(s)	33
HphI	GGTGA	1 cut(s)	130
HpyAV	CCTTC	1 cut(s)	99
HpyCH4V	TGCA	2 cut(s)	19, 112
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
HpyF3I	CTNAG	2 cut(s)	26, 206
Hsp92II	CATG	1 cut(s)	172
Ksp22I	TGATCA	1 cut(s)	72
Kzo9I	GATC	2 cut(s)	63, 72
LmnI	GCTCC	1 cut(s)	189
LpnPI	CCDG	5 cut(s)	59, 68, 101, 144, 179
Lsp1109I	GCAGC	2 cut(s)	3, 124
LweI	GCATC	2 cut(s)	99, 192
MalI	GATC	2 cut(s)	65, 74
MbiI	CCGCTC	1 cut(s)	180
MboI	GATC	2 cut(s)	63, 72
MnlI	CCTC	2 cut(s)	21, 180
MspA1I	CMGCKG	1 cut(s)	115
MspR9I	CCNGG	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	194
MvnI	CGCG	3 cut(s)	146, 165, 200
MwoI	GCNNNNNNNGC	1 cut(s)	22
NdeII	GATC	2 cut(s)	63, 72
NlaIII	CATG	1 cut(s)	172
NlaIV	GGNNCC	2 cut(s)	44, 191
PfeI	GAWTC	1 cut(s)	33
PkrI	GCNGC	3 cut(s)	18, 114, 164
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
PspN4I	GGNNCC	2 cut(s)	44, 191
PspPI	GGNCC	1 cut(s)	42
PstI	CTGCAG	1 cut(s)	21
PstNI	CAGNNNCTG	1 cut(s)	25
PvuII	CAGCTG	1 cut(s)	115
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
SatI	GCNGC	3 cut(s)	17, 113, 163
Sau3AI	GATC	2 cut(s)	63, 72
Sau96I	GGNCC	1 cut(s)	42
ScrFI	CCNGG	1 cut(s)	194
SetI	ASST	1 cut(s)	117
SfaNI	GCATC	2 cut(s)	99, 192
SfcI	CTRYAG	1 cut(s)	17
SsiI	CCGC	2 cut(s)	163, 178
StyD4I	CCNGG	1 cut(s)	192
TaqI	TCGA	2 cut(s)	66, 182
TatI	WGTACW	1 cut(s)	152
TauI	GCSGC	1 cut(s)	165
TfiI	GAWTC	1 cut(s)	33
TseI	GCWGC	2 cut(s)	16, 112
TspDTI	ATGAA	2 cut(s)	114, 185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.