Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0008100

Physical Location & Seq

Genomic Coordinates Forward (+)

4562804 .. 4566226

Gene Structure 3423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1064900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGAGCAAGGTCTGTCACTGAGTGCTCTGACTGCGTCTTGCAATGGTGGGGTATGTGGATCAATGCCTTCGTGGAGGAGGCATTTCAAACTAATGAGCAAAACCCGGATAAGTACTGGTGTCGAAAGGTGTGGTATCTGGCATCTGTGCCGTCAAAGCTTATTCTTAAGAGGTAACACCGATGTGGTAAGACAAAGGAGTATGAGGGTGGAAGCTGGTTGGCTGTTTAAAGGGGGTGATCAGGGGTTGAATGCAAGCTCGGAGCAGAGCGAGAGTGCTAATGAAGATATTTTGATATTCTTTTTTCAGCTGGACCTGGCAACACGAGTACAGTATGCTTTGAACACGGAACAGTATGATGTTGCACAACAACTAAGAAACAAGCTGACTGAGGTTGAAGCTGAGGTTATTAAGCAGCAGGAGGCAAAAAGGGGTTCGTCCCCAAAGAGTGAAGCTCAAGATAAGGCGATAAGTATCATTCGCTTACGTGCAGACCTGCAGAAAGCAATTGAGAGTGAGAATTATGCAGTGGCAGCCAAGCTACGAGATACAATTTCTAAACTGGAGGCAGAGTCACTGGCTGCATCCGCCAAAGCTTTAGCACATGAAAATGCAAATTATTCATTTCGTTTGGGACAGAGAGTGAGGCATAAAAATTTTGGCTATCGCGCCGTGGTTTGTGGGATGGATCCGGTGTGTTCTGAATCAAGTACATGGATGGAAACTGCACAGGTTGAAAAGTTGAGACGCGGTTCTAATCAGCCATTTTATCAGATTTTGGTTGATGTACATGCGGACCCCAACCTTCTGGTGGCATATGTTTCTGAGGAGAATCTGTTAGCCCCTGAAGAACCCGACTTGGATCAATTTGATCATCCCTACATTTCCTTTCTATTCTATGGGATGGATGCAGCTGGAGATTTCATCCCCATCAAGCAATTGCGAGAGAAGTACAATCGGCCACGACATGAAATCCCCTACGATCCTCAAGACGAGGGGGAAGGAAGAGATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009368 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009840 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UVR YccV-like

Protein Analysis

339

Amino Acids

38.13

Weight (kDa)

5.76

Isoelectric Point (pI)

53.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UVR	PF02151	158 - 190	3.9e-06	UvrB/uvrC motif
YccV-like	PF08755	208 - 304	5.3e-28	Hemimethylated DNA-binding protein YccV like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03390 AT2G03390 AT2G03390 AT2G03390 AT2G03390 AT2G03390 AT2G03390
fragaria_vesca	FvH4_4g30500 FvH4_4g30500
malus_domestica	MD16G1064900.v1.1
prunus_persica	Prupe.1G282000_v2.0.a1
pyrus_communis	pycom13g05840 pycom16g05670
rosa_chinensis	RchiOBHm_Chr4g0438871
rosa_laevigata	RLG00000006323
rosa_multiflora	Rmu_co8274455.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379890
rosa_rugosa	Rorug04G0313900.1
rosa_samantha	Rh4AG364700 Rh4BG375800 Rh4CG389900 Rh4DG370500
rosa_wichuraiana	Rw0G007280 Rw0G016830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	504
AccII	CGCG	2 cut(s)	669, 750
AciI	CCGC	3 cut(s)	588, 750, 794
AclWI	GGATC	5 cut(s)	67, 683, 696, 870, 977
AcoI	YGGCCR	1 cut(s)	959
AcsI	RAATTY	1 cut(s)	655
AcuI	CTGAAG	1 cut(s)	867
AdeI	CACNNNGTG	1 cut(s)	23
AfaI	GTAC	5 cut(s)	115, 330, 712, 789, 953
AfiI	CCNNNNNNNGG	1 cut(s)	811
AflII	CTTAAG	1 cut(s)	166
AgsI	TTSAA	5 cut(s)	88, 250, 343, 398, 737
AjnI	CCWGG	1 cut(s)	315
AleI	CACNNNNGTG	1 cut(s)	182
Alw21I	GWGCWC	1 cut(s)	28
Alw26I	GTCTC	1 cut(s)	739
AlwI	GGATC	5 cut(s)	67, 683, 696, 870, 977
AoxI	GGCC	1 cut(s)	959
ApeKI	GCWGC	4 cut(s)	415, 533, 581, 911
ApoI	RAATTY	1 cut(s)	655
AspLEI	GCGC	1 cut(s)	671
AspS9I	GGNCC	2 cut(s)	313, 796
AsuC2I	CCSGG	1 cut(s)	106
AsuHPI	GGTGA	1 cut(s)	248
AvaII	GGWCC	2 cut(s)	313, 796
BamHI	GGATCC	1 cut(s)	688
BauI	CACGAG	1 cut(s)	324
Bbv12I	GWGCWC	1 cut(s)	28
BbvCI	CCTCAGC	1 cut(s)	402
BbvI	GCAGC	4 cut(s)	427, 545, 568, 923
BccI	CCATC	4 cut(s)	679, 712, 898, 938
BceAI	ACGGC	2 cut(s)	135, 656
BciT130I	CCWGG	1 cut(s)	317
BclI	TGATCA	2 cut(s)	238, 871
BcnI	CCSGG	1 cut(s)	106
BcoDI	GTCTC	1 cut(s)	739
BfmI	CTRYAG	1 cut(s)	497
BfrI	CTTAAG	1 cut(s)	166
BfuAI	ACCTGC	1 cut(s)	504
BisI	GCNGC	4 cut(s)	416, 534, 582, 912
BlsI	GCNGC	4 cut(s)	417, 535, 583, 913
BmcAI	AGTACT	1 cut(s)	115
Bme1390I	CCNGG	2 cut(s)	106, 317
Bme18I	GGWCC	2 cut(s)	313, 796
BmgT120I	GGNCC	2 cut(s)	313, 796
BmiI	GGNNCC	2 cut(s)	690, 798
BmrFI	CCNGG	2 cut(s)	106, 317
BmsI	GCATC	4 cut(s)	151, 593, 898, 1000
BplI	GAGNNNNNCTC	2 cut(s)	439, 471
BpmI	CTGGAG	2 cut(s)	584, 936
Bpu10I	CCTNAGC	1 cut(s)	402
BpuEI	CTTGAG	2 cut(s)	441, 972
BpuMI	CCSGG	1 cut(s)	106
BsaAI	YACGTR	1 cut(s)	488
BsaBI	GATNNNNATC	1 cut(s)	473
BsaJI	CCNNGG	1 cut(s)	672
BsaWI	WCCGGW	1 cut(s)	691
BsaXI	ACNNNNNCTCC	4 cut(s)	557, 587, 821, 851
Bsc4I	CCNNNNNNNGG	1 cut(s)	811
Bse1I	ACTGG	3 cut(s)	121, 567, 582
Bse3DI	GCAATG	1 cut(s)	49
Bse8I	GATNNNNATC	1 cut(s)	473
BseBI	CCWGG	1 cut(s)	317
BseDI	CCNNGG	1 cut(s)	672
BseGI	GGATG	7 cut(s)	584, 690, 723, 874, 909, 913, 924
BseJI	GATNNNNATC	1 cut(s)	473
BseLI	CCNNNNNNNGG	1 cut(s)	811
BseMI	GCAATG	1 cut(s)	49
BseMII	CTCAG	4 cut(s)	11, 381, 393, 816
BseNI	ACTGG	3 cut(s)	121, 567, 582
BseRI	GAGGAG	2 cut(s)	91, 842
BseXI	GCAGC	4 cut(s)	427, 545, 568, 923
BsgI	GTGCAG	2 cut(s)	510, 711
Bsh1236I	CGCG	2 cut(s)	669, 750
BshFI	GGCC	1 cut(s)	961
BsiHKAI	GWGCWC	1 cut(s)	28
BsiSI	CCGG	2 cut(s)	106, 692
BslFI	GGGAC	2 cut(s)	424, 648
BslI	CCNNNNNNNGG	1 cut(s)	811
BsmAI	GTCTC	1 cut(s)	739
BsmBI	CGTCTC	1 cut(s)	739
BsmFI	GGGAC	2 cut(s)	424, 648
BsmI	GAATGC	1 cut(s)	256
BsnI	GGCC	1 cut(s)	961
Bsp1286I	GDGCHC	1 cut(s)	28
Bsp1407I	TGTACA	1 cut(s)	787
Bsp143I	GATC	6 cut(s)	59, 238, 688, 862, 871, 982
BspACI	CCGC	3 cut(s)	588, 750, 794
BspANI	GGCC	1 cut(s)	961
BspCNI	CTCAG	4 cut(s)	12, 382, 394, 817
BspFNI	CGCG	2 cut(s)	669, 750
BspLI	GGNNCC	2 cut(s)	690, 798
BspMAI	CTGCAG	1 cut(s)	501
BspMI	ACCTGC	1 cut(s)	504
BspPI	GGATC	5 cut(s)	67, 683, 696, 870, 977
BspTI	CTTAAG	1 cut(s)	166
BsrDI	GCAATG	1 cut(s)	49
BsrGI	TGTACA	1 cut(s)	787
BsrI	ACTGG	3 cut(s)	121, 567, 582
BssECI	CCNNGG	1 cut(s)	672
BssMI	GATC	6 cut(s)	59, 238, 688, 862, 871, 982
BssSI	CACGAG	1 cut(s)	324
Bst2BI	CACGAG	1 cut(s)	324
Bst2UI	CCWGG	1 cut(s)	317
Bst4CI	ACNGT	2 cut(s)	333, 354
Bst6I	CTCTTC	1 cut(s)	1000
BstAFI	CTTAAG	1 cut(s)	166
BstAUI	TGTACA	1 cut(s)	787
BstBAI	YACGTR	1 cut(s)	488
BstC8I	GCNNGC	1 cut(s)	256
BstDEI	CTNAG	6 cut(s)	20, 374, 390, 402, 825, 1014
BstDSI	CCRYGG	1 cut(s)	672
BstF5I	GGATG	7 cut(s)	584, 690, 723, 874, 909, 913, 924
BstFNI	CGCG	2 cut(s)	669, 750
BstHHI	GCGC	1 cut(s)	671
BstKTI	GATC	6 cut(s)	62, 241, 691, 865, 874, 985
BstMAI	GTCTC	1 cut(s)	739
BstMBI	GATC	6 cut(s)	59, 238, 688, 862, 871, 982
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 156, 533, 587
BstNI	CCWGG	1 cut(s)	317
BstNSI	RCATGY	1 cut(s)	794
BstSCI	CCNGG	2 cut(s)	104, 315
BstSFI	CTRYAG	1 cut(s)	497
BstUI	CGCG	2 cut(s)	669, 750
BstV1I	GCAGC	4 cut(s)	427, 545, 568, 923
BstX2I	RGATCY	1 cut(s)	688
BstXI	CCANNNNNNTGG	1 cut(s)	808
BstYI	RGATCY	1 cut(s)	688
BsuRI	GGCC	1 cut(s)	961
BtgI	CCRYGG	1 cut(s)	672
BtsCI	GGATG	7 cut(s)	584, 690, 723, 874, 909, 913, 924
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	3 cut(s)	17, 534, 575
BveI	ACCTGC	1 cut(s)	504
Cac8I	GCNNGC	1 cut(s)	256
CfoI	GCGC	1 cut(s)	671
Cfr13I	GGNCC	2 cut(s)	313, 796
CseI	GACGC	2 cut(s)	24, 756
Csp6I	GTAC	5 cut(s)	114, 329, 711, 788, 952
CviAII	CATG	4 cut(s)	605, 714, 791, 968
CviQI	GTAC	5 cut(s)	114, 329, 711, 788, 952
DdeI	CTNAG	6 cut(s)	20, 374, 390, 402, 825, 1014
DpnI	GATC	6 cut(s)	61, 240, 690, 864, 873, 984
DpnII	GATC	6 cut(s)	59, 238, 688, 862, 871, 982
DraI	TTTAAA	1 cut(s)	229
DraIII	CACNNNGTG	1 cut(s)	23
EaeI	YGGCCR	1 cut(s)	959
Eam1104I	CTCTTC	1 cut(s)	1000
EarI	CTCTTC	1 cut(s)	1000
EciI	GGCGGA	1 cut(s)	577
Eco47I	GGWCC	2 cut(s)	313, 796
Eco57I	CTGAAG	1 cut(s)	867
EcoRII	CCWGG	1 cut(s)	315
Esp3I	CGTCTC	1 cut(s)	739
FaeI	CATG	4 cut(s)	608, 717, 794, 971
FalI	AAGNNNNNCTT	1 cut(s)	997
FaqI	GGGAC	2 cut(s)	424, 648
FatI	CATG	4 cut(s)	604, 713, 790, 967
FauNDI	CATATG	1 cut(s)	817
FbaI	TGATCA	2 cut(s)	238, 871
Fnu4HI	GCNGC	4 cut(s)	416, 534, 582, 912
FokI	GGATG	7 cut(s)	571, 697, 730, 861, 911, 916, 920
Fsp4HI	GCNGC	4 cut(s)	416, 534, 582, 912
GlaI	GCGC	1 cut(s)	670
GluI	GCNGC	4 cut(s)	416, 534, 582, 912
GsuI	CTGGAG	2 cut(s)	584, 936
HaeIII	GGCC	1 cut(s)	961
HapII	CCGG	2 cut(s)	106, 692
HgaI	GACGC	2 cut(s)	24, 756
HhaI	GCGC	1 cut(s)	671
Hin1II	CATG	4 cut(s)	608, 717, 794, 971
Hin6I	GCGC	1 cut(s)	669
HinP1I	GCGC	1 cut(s)	669
HindIII	AAGCTT	2 cut(s)	157, 594
HinfI	GANTC	3 cut(s)	572, 704, 832
HpaII	CCGG	2 cut(s)	106, 692
HphI	GGTGA	1 cut(s)	248
Hpy188I	TCNGA	5 cut(s)	30, 262, 703, 774, 826
Hpy188III	TCNNGA	2 cut(s)	458, 989
HpyAV	CCTTC	3 cut(s)	78, 815, 995
HpyCH4III	ACNGT	2 cut(s)	333, 354
HpyCH4IV	ACGT	1 cut(s)	487
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 156, 533, 587
HpyF3I	CTNAG	6 cut(s)	20, 374, 390, 402, 825, 1014
HpySE526I	ACGT	1 cut(s)	487
Hsp92II	CATG	4 cut(s)	608, 717, 794, 971
HspAI	GCGC	1 cut(s)	669
Ksp22I	TGATCA	2 cut(s)	238, 871
Kzo9I	GATC	6 cut(s)	59, 238, 688, 862, 871, 982
LmnI	GCTCC	2 cut(s)	4, 262
Lsp1109I	GCAGC	4 cut(s)	427, 545, 568, 923
LweI	GCATC	4 cut(s)	151, 593, 898, 1000
MaeII	ACGT	1 cut(s)	487
MaeIII	GTNAC	3 cut(s)	15, 173, 573
MalI	GATC	6 cut(s)	61, 240, 690, 864, 873, 984
MboI	GATC	6 cut(s)	59, 238, 688, 862, 871, 982
MboII	GAAGA	3 cut(s)	296, 860, 1017
MfeI	CAATTG	2 cut(s)	507, 938
MflI	RGATCY	1 cut(s)	688
MhlI	GDGCHC	1 cut(s)	28
MluCI	AATT	7 cut(s)	507, 520, 552, 616, 655, 866, 938
MlyI	GAGTC	1 cut(s)	581
MseI	TTAA	3 cut(s)	167, 228, 411
MslI	CAYNNNNRTG	2 cut(s)	182, 609
MspA1I	CMGCKG	2 cut(s)	310, 914
MspCI	CTTAAG	1 cut(s)	166
MspI	CCGG	2 cut(s)	106, 692
MspR9I	CCNGG	2 cut(s)	106, 317
MunI	CAATTG	2 cut(s)	507, 938
Mva1269I	GAATGC	1 cut(s)	256
MvaI	CCWGG	1 cut(s)	317
MvnI	CGCG	2 cut(s)	669, 750
MwoI	GCNNNNNNNGC	4 cut(s)	32, 156, 533, 587
NciI	CCSGG	1 cut(s)	106
NdeI	CATATG	1 cut(s)	817
NdeII	GATC	6 cut(s)	59, 238, 688, 862, 871, 982
NlaIII	CATG	4 cut(s)	608, 717, 794, 971
NlaIV	GGNNCC	2 cut(s)	690, 798
NmuCI	GTSAC	2 cut(s)	15, 573
NspI	RCATGY	1 cut(s)	794
OliI	CACNNNNGTG	1 cut(s)	182
PctI	GAATGC	1 cut(s)	256
PfeI	GAWTC	2 cut(s)	704, 832
PflFI	GACNNNGTC	1 cut(s)	34
PkrI	GCNGC	4 cut(s)	417, 535, 583, 913
PleI	GAGTC	1 cut(s)	580
PpsI	GAGTC	1 cut(s)	580
Ppu21I	YACGTR	1 cut(s)	488
Psp6I	CCWGG	1 cut(s)	315
PspGI	CCWGG	1 cut(s)	315
PspN4I	GGNNCC	2 cut(s)	690, 798
PspPI	GGNCC	2 cut(s)	313, 796
PstI	CTGCAG	1 cut(s)	501
PsuI	RGATCY	1 cut(s)	688
PsyI	GACNNNGTC	1 cut(s)	34
PvuII	CAGCTG	2 cut(s)	310, 914
RsaI	GTAC	5 cut(s)	115, 330, 712, 789, 953
RsaNI	GTAC	5 cut(s)	114, 329, 711, 788, 952
RseI	CAYNNNNRTG	2 cut(s)	182, 609
SaqAI	TTAA	3 cut(s)	167, 228, 411
SatI	GCNGC	4 cut(s)	416, 534, 582, 912
Sau3AI	GATC	6 cut(s)	59, 238, 688, 862, 871, 982
Sau96I	GGNCC	2 cut(s)	313, 796
ScaI	AGTACT	1 cut(s)	115
SchI	GAGTC	1 cut(s)	581
ScrFI	CCNGG	2 cut(s)	106, 317
SduI	GDGCHC	1 cut(s)	28
SfaNI	GCATC	4 cut(s)	151, 593, 898, 1000
SfcI	CTRYAG	1 cut(s)	497
SinI	GGWCC	2 cut(s)	313, 796
SmiMI	CAYNNNNRTG	2 cut(s)	182, 609
SmlI	CTYRAG	3 cut(s)	166, 456, 987
SmoI	CTYRAG	3 cut(s)	166, 456, 987
Sse9I	AATT	7 cut(s)	507, 520, 552, 616, 655, 866, 938
SsiI	CCGC	3 cut(s)	588, 750, 794
StyD4I	CCNGG	2 cut(s)	104, 315
TaaI	ACNGT	2 cut(s)	333, 354
TaiI	ACGT	1 cut(s)	490
TaqI	TCGA	1 cut(s)	123
TasI	AATT	7 cut(s)	507, 520, 552, 616, 655, 866, 938
TatI	WGTACW	5 cut(s)	113, 328, 710, 787, 951
TfiI	GAWTC	2 cut(s)	704, 832
Tru1I	TTAA	3 cut(s)	167, 228, 411
Tru9I	TTAA	3 cut(s)	167, 228, 411
TscAI	CASTG	3 cut(s)	24, 534, 582
TseFI	GTSAC	2 cut(s)	15, 573
TseI	GCWGC	4 cut(s)	415, 533, 581, 911
Tsp45I	GTSAC	2 cut(s)	15, 573
TspDTI	ATGAA	5 cut(s)	297, 612, 621, 913, 984
TspGWI	ACGGA	1 cut(s)	362
TspRI	CASTG	3 cut(s)	24, 534, 582
Tth111I	GACNNNGTC	1 cut(s)	34
Vha464I	CTTAAG	1 cut(s)	166
VpaK11BI	GGWCC	2 cut(s)	313, 796
XapI	RAATTY	1 cut(s)	655
XceI	RCATGY	1 cut(s)	794
XcmI	CCANNNNNNNNNTGG	1 cut(s)	808
ZrmI	AGTACT	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.