AT2G03430

Ankyrin repeats (many copies)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013346
Physical Location & Seq
Reverse (-)
1036008 .. 1037675
1668 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G03430.1

Sequence Viewer

Length: 723 bp
ATGGAAATTGCAACCGATACAGCAAAGCAGATGAGAGACGAAGAGTTGTTCAAAGCAGCGGAATGGGGAGATTCATCGTTGTTCATGTCATTATCTGAAGAACAGCTCTCTAAATCTCTCAATTTCAGAAACGAAGATGGTCGCTCTCTCCTCCATGTCGCTGCTTCCTTCGGCCATTCTCAAATAGTGAAGTTGTTATCAAGTTCAGATGAAGCAAAGACTGTAATCAATAGCAAGGATGATGAAGGATGGGCTCCTTTGCATTCCGCTGCTAGCATCGGTAATGCTGAGCTCGTTGAGGTGCTTTTGACCAGAGGTGCTGATGTCAATGCCAAAAATAACGGTGGTCGCACTGCTCTTCACTATGCTGCTAGCAAAGGCCGGTTGGAGATTGCTCAGCTTTTATTAACACACGGTGCAAAGATTAACATCACAGACAAGGTTGGTTGCACTCCGCTTCACAGGGCAGCAAGCGTGGGAAAGTTAGAAGTTTGTGAATTTCTTATTGAAGAAGGAGCAGAGATCGATGCTACGGATAAAATGGGTCAAACTGCACTCATGCATTCAGTTATCTGCGATGACAAACAGGTTGCGTTCCTGCTTATAAGACATGGTGCAGATGTGGATGTAGAAGACAAGGAAGGCTACACTGTTCTAGGCCGAGCTACCAATGAATTCCGACCTGCACTTATCGATGCTGCTAAGGCCATGCTTGAAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5

Protein Analysis

240

Amino Acids

25.92

Weight (kDa)

5.05

Isoelectric Point (pI)

31.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 16 - 113 8.8e-16 Ankyrin repeats (3 copies)
Ank_5 PF13857 77 - 120 4e-07 Ankyrin repeats (many copies)
Ank PF00023 83 - 114 4.2e-08 Ankyrin repeat
Ank_2 PF12796 94 - 179 1e-21 Ankyrin repeats (3 copies)
Ank_4 PF13637 97 - 136 5.7e-10 Ankyrin repeats (many copies)
Ank_5 PF13857 102 - 154 1.3e-12 Ankyrin repeats (many copies)
Ank PF00023 116 - 147 1.3e-09 Ankyrin repeat
Ank_3 PF13606 116 - 144 1.1e-06 Ankyrin repeat
Ank_4 PF13637 128 - 169 1.4e-06 Ankyrin repeats (many copies)
Ank PF00023 149 - 180 3.8e-08 Ankyrin repeat
Ank_2 PF12796 153 - 224 1.1e-11 Ankyrin repeats (3 copies)
Ank_4 PF13637 153 - 202 2.6e-07 Ankyrin repeats (many copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013346)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G03430
fragaria_vesca FvH4_4g30470
malus_domestica MD13G1065800.v1.1 MD16G1064400.v1.1
prunus_persica Prupe.1G282400_v2.0.a1
pyrus_communis pycom13g05800 pycom16g05620
rosa_chinensis RchiOBHm_Chr4g0438821
rosa_laevigata RLG00000006328
rosa_multiflora Rmu_sc0002505.1_g000016
rosa_roxburghii Rroxscaffold_5G00379860
rosa_rugosa Rorug04G0313300
rosa_samantha Rh4AG364300 Rh4BG375400 Rh4CG389500 Rh4DG370000
rosa_wichuraiana Rw0G007240 Rw0G016790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 605
Acc36I ACCTGC 1 cut(s) 691
AciI CCGC 3 cut(s) 59, 267, 455
AcoI YGGCCR 1 cut(s) 172
AcsI RAATTY 2 cut(s) 497, 674
AcuI CTGAAG 1 cut(s) 117
AdeI CACNNNGTG 1 cut(s) 416
AgsI TTSAA 3 cut(s) 52, 509, 716
AluBI AGCT 4 cut(s) 106, 292, 400, 665
AluI AGCT 4 cut(s) 106, 292, 400, 665
Alw21I GWGCWC 1 cut(s) 294
Alw26I GTCTC 1 cut(s) 30
AoxI GGCC 4 cut(s) 172, 379, 658, 705
ApeKI GCWGC 6 cut(s) 56, 161, 269, 368, 467, 698
ApoI RAATTY 2 cut(s) 497, 674
AsuNHI GCTAGC 2 cut(s) 272, 371
BanII GRGCYC 2 cut(s) 256, 294
BbsI GAAGAC 1 cut(s) 639
Bbv12I GWGCWC 1 cut(s) 294
BbvI GCAGC 6 cut(s) 68, 148, 256, 355, 479, 685
BccI CCATC 2 cut(s) 131, 243
BcoDI GTCTC 1 cut(s) 30
BfaI CTAG 3 cut(s) 273, 372, 656
BfuAI ACCTGC 1 cut(s) 691
BisI GCNGC 6 cut(s) 57, 162, 270, 369, 468, 699
BlpI GCTNAGC 2 cut(s) 288, 396
BlsI GCNGC 6 cut(s) 58, 163, 271, 370, 469, 700
BmiI GGNNCC 1 cut(s) 255
BmsI GCATC 3 cut(s) 285, 517, 685
BmtI GCTAGC 2 cut(s) 276, 375
BpiI GAAGAC 1 cut(s) 639
Bpu10I CCTNAGC 1 cut(s) 702
Bpu1102I GCTNAGC 2 cut(s) 288, 396
Bsa29I ATCGAT 2 cut(s) 525, 693
BsaBI GATNNNNATC 1 cut(s) 428
Bse118I RCCGGY 1 cut(s) 381
Bse8I GATNNNNATC 1 cut(s) 428
BseCI ATCGAT 2 cut(s) 525, 693
BseGI GGATG 3 cut(s) 244, 254, 631
BseJI GATNNNNATC 1 cut(s) 428
BseMII CTCAG 2 cut(s) 279, 410
BseRI GAGGAG 1 cut(s) 140
BseXI GCAGC 6 cut(s) 68, 148, 256, 355, 479, 685
BsgI GTGCAG 3 cut(s) 537, 636, 669
BshFI GGCC 4 cut(s) 174, 381, 660, 707
BshVI ATCGAT 2 cut(s) 525, 693
BsiHKAI GWGCWC 1 cut(s) 294
BsiSI CCGG 1 cut(s) 382
BsmAI GTCTC 1 cut(s) 30
BsmBI CGTCTC 1 cut(s) 30
BsmI GAATGC 2 cut(s) 262, 562
BsnI GGCC 4 cut(s) 174, 381, 660, 707
Bsp1286I GDGCHC 2 cut(s) 256, 294
Bsp143I GATC 1 cut(s) 522
Bsp1720I GCTNAGC 2 cut(s) 288, 396
BspACI CCGC 3 cut(s) 59, 267, 455
BspANI GGCC 4 cut(s) 174, 381, 660, 707
BspCNI CTCAG 2 cut(s) 280, 409
BspDI ATCGAT 2 cut(s) 525, 693
BspLI GGNNCC 1 cut(s) 255
BspMI ACCTGC 1 cut(s) 691
BspOI GCTAGC 2 cut(s) 276, 375
BspQI GCTCTTC 1 cut(s) 363
BsrFI RCCGGY 1 cut(s) 381
BssAI RCCGGY 1 cut(s) 381
BssMI GATC 1 cut(s) 522
Bst4CI ACNGT 4 cut(s) 223, 344, 416, 652
Bst6I CTCTTC 2 cut(s) 36, 363
BstC8I GCNNGC 3 cut(s) 274, 373, 472
BstDEI CTNAG 3 cut(s) 288, 396, 702
BstF5I GGATG 3 cut(s) 244, 254, 631
BstKTI GATC 1 cut(s) 525
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 1 cut(s) 522
BstMWI GCNNNNNNNGC 1 cut(s) 704
BstV1I GCAGC 6 cut(s) 68, 148, 256, 355, 479, 685
BstV2I GAAGAC 1 cut(s) 639
Bsu15I ATCGAT 2 cut(s) 525, 693
BsuRI GGCC 4 cut(s) 174, 381, 660, 707
BsuTUI ATCGAT 2 cut(s) 525, 693
BtgZI GCGATG 1 cut(s) 591
BtsCI GGATG 3 cut(s) 244, 254, 631
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 2 cut(s) 351, 648
BveI ACCTGC 1 cut(s) 691
Cac8I GCNNGC 3 cut(s) 274, 373, 472
Cfr10I RCCGGY 1 cut(s) 381
ClaI ATCGAT 2 cut(s) 525, 693
CviAII CATG 5 cut(s) 85, 155, 559, 611, 709
DdeI CTNAG 3 cut(s) 288, 396, 702
DpnI GATC 1 cut(s) 524
DpnII GATC 1 cut(s) 522
DraIII CACNNNGTG 1 cut(s) 416
EaeI YGGCCR 1 cut(s) 172
Eam1104I CTCTTC 2 cut(s) 36, 363
EarI CTCTTC 2 cut(s) 36, 363
Ecl136II GAGCTC 1 cut(s) 292
Eco24I GRGCYC 2 cut(s) 256, 294
Eco53kI GAGCTC 1 cut(s) 292
Eco57I CTGAAG 1 cut(s) 117
EcoICRI GAGCTC 1 cut(s) 292
EcoRI GAATTC 1 cut(s) 674
EcoT22I ATGCAT 1 cut(s) 564
EcoT38I GRGCYC 2 cut(s) 256, 294
Esp3I CGTCTC 1 cut(s) 30
FaeI CATG 5 cut(s) 88, 158, 562, 614, 712
FaiI YATR 7 cut(s) 86, 156, 366, 560, 605, 612, 710
FatI CATG 5 cut(s) 84, 154, 558, 610, 708
Fnu4HI GCNGC 6 cut(s) 57, 162, 270, 369, 468, 699
FokI GGATG 3 cut(s) 251, 261, 638
FriOI GRGCYC 2 cut(s) 256, 294
Fsp4HI GCNGC 6 cut(s) 57, 162, 270, 369, 468, 699
FspBI CTAG 3 cut(s) 273, 372, 656
GluI GCNGC 6 cut(s) 57, 162, 270, 369, 468, 699
HaeIII GGCC 4 cut(s) 174, 381, 660, 707
HapII CCGG 1 cut(s) 382
Hin1II CATG 5 cut(s) 88, 158, 562, 614, 712
HinfI GANTC 1 cut(s) 71
HpaII CCGG 1 cut(s) 382
Hpy188I TCNGA 4 cut(s) 97, 128, 208, 680
HpyAV CCTTC 5 cut(s) 178, 239, 506, 635, 710
HpyCH4III ACNGT 4 cut(s) 223, 344, 416, 652
HpyCH4V TGCA 8 cut(s) 11, 262, 419, 450, 554, 562, 617, 686
HpyF10VI GCNNNNNNNGC 1 cut(s) 704
HpyF3I CTNAG 3 cut(s) 288, 396, 702
Hsp92II CATG 5 cut(s) 88, 158, 562, 614, 712
Kzo9I GATC 1 cut(s) 522
LguI GCTCTTC 1 cut(s) 363
LmnI GCTCC 2 cut(s) 259, 515
LpnPI CCDG 6 cut(s) 325, 395, 448, 572, 611, 696
Lsp1109I GCAGC 6 cut(s) 68, 148, 256, 355, 479, 685
LweI GCATC 3 cut(s) 285, 517, 685
MaeI CTAG 3 cut(s) 273, 372, 656
MalI GATC 1 cut(s) 524
MboI GATC 1 cut(s) 522
MboII GAAGA 6 cut(s) 53, 110, 146, 350, 521, 644
MhlI GDGCHC 2 cut(s) 256, 294
MluCI AATT 4 cut(s) 6, 121, 497, 674
MmeI TCCRAC 2 cut(s) 366, 703
MnlI CCTC 3 cut(s) 161, 292, 308
Mph1103I ATGCAT 1 cut(s) 564
MseI TTAA 2 cut(s) 407, 426
MspA1I CMGCKG 2 cut(s) 59, 269
MspI CCGG 1 cut(s) 382
Mva1269I GAATGC 2 cut(s) 262, 562
MwoI GCNNNNNNNGC 1 cut(s) 704
NdeII GATC 1 cut(s) 522
NheI GCTAGC 2 cut(s) 272, 371
NlaIII CATG 5 cut(s) 88, 158, 562, 614, 712
NlaIV GGNNCC 1 cut(s) 255
NmeAIII GCCGAG 1 cut(s) 686
NsiI ATGCAT 1 cut(s) 564
PciSI GCTCTTC 1 cut(s) 363
PctI GAATGC 2 cut(s) 262, 562
PfeI GAWTC 1 cut(s) 71
PkrI GCNGC 6 cut(s) 58, 163, 271, 370, 469, 700
PsiI TTATAA 1 cut(s) 605
Psp124BI GAGCTC 1 cut(s) 294
PspN4I GGNNCC 1 cut(s) 255
SacI GAGCTC 1 cut(s) 294
SapI GCTCTTC 1 cut(s) 363
SaqAI TTAA 2 cut(s) 407, 426
SatI GCNGC 6 cut(s) 57, 162, 270, 369, 468, 699
Sau3AI GATC 1 cut(s) 522
SduI GDGCHC 2 cut(s) 256, 294
SetI ASST 9 cut(s) 108, 294, 303, 319, 402, 444, 591, 667, 685
SfaNI GCATC 3 cut(s) 285, 517, 685
Sse9I AATT 4 cut(s) 6, 121, 497, 674
SsiI CCGC 3 cut(s) 59, 267, 455
SspMI CTAG 3 cut(s) 273, 372, 656
SstI GAGCTC 1 cut(s) 294
TaaI ACNGT 4 cut(s) 223, 344, 416, 652
TaqI TCGA 2 cut(s) 525, 693
TasI AATT 4 cut(s) 6, 121, 497, 674
TfiI GAWTC 1 cut(s) 71
Tru1I TTAA 2 cut(s) 407, 426
Tru9I TTAA 2 cut(s) 407, 426
TscAI CASTG 2 cut(s) 358, 655
TseI GCWGC 6 cut(s) 56, 161, 269, 368, 467, 698
TspDTI ATGAA 5 cut(s) 63, 73, 225, 258, 687
TspGWI ACGGA 1 cut(s) 548
TspRI CASTG 2 cut(s) 358, 655
XapI RAATTY 2 cut(s) 497, 674
XspI CTAG 3 cut(s) 273, 372, 656
Zsp2I ATGCAT 1 cut(s) 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.