Rmu_sc0002505.1_g000016

26S proteasome non-ATPase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002505.1
OG0013346
Physical Location & Seq
Forward (+)
63889 .. 66632
2744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002505.1_g000016.1.cds

Sequence Viewer

Length: 1017 bp
atggagatcgatcaatcggagccgcaaaccaaaagcgaagacctcttcaaagccgccgagaccggcgactcttcggcgttcgaatctctcactccaaagcagctcgcttcagcttcctctctcagaaacgaggacggccgctccctccttcacgtcgccgtctcttccggtcactctcaggtggtaaaggtactgctagctgctgatgaatcgagtggtgtgataaacagtaaggatgaagatggttgggcaccgctgcattctgcggcgagcagtgggaatgtagtaatagtggagatgctgctaagcaaaggagctgatgttaatttgaagaacgatggtggtcgcgttgcacttcactatgctgccagcaagggatggatggagattgctgaaaatttgatctcacatggggcgaagcttaatgtacaagacaaggttggttccaccccattgcatcgagcagctagtactgggaaatcacaattgtgtgaacttctaattgaggaaggagctgaaattgatgttgttgataaagcaggccagactcctcttatgagtgccgtgatttgcgagaacaaggagtgttatgatatgtttaacttcataggagctgatgttaatttgaagaacgatggtggtcgcgttgcacttcactatgctgccagcaagggatggatggagattgctgaaaatttgatctcacatggggcgaagcttaatgtacaagacaaggttggttccaccccattgcatcgagcagctagtactgggaaatcacaattgtgtgaacttctaattgaggaaggagctgaaattgatgttgttgataaagcaggccagactcctcttatgagtgccgtgatttgcgagaacaaggaggtttctctccttctaataaggcatggagcagatgtggatgtggaagacaaagaaggatacacagtgcttggtcgagcttcgaatgagttcagaccattattgattgatgccgctaaggcgatgcttgaagggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5

Protein Analysis

338

Amino Acids

35.92

Weight (kDa)

4.88

Isoelectric Point (pI)

35.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013346)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G03430
fragaria_vesca FvH4_4g30470
malus_domestica MD13G1065800.v1.1 MD16G1064400.v1.1
prunus_persica Prupe.1G282400_v2.0.a1
pyrus_communis pycom13g05800 pycom16g05620
rosa_chinensis RchiOBHm_Chr4g0438821
rosa_laevigata RLG00000006328
rosa_multiflora Rmu_sc0002505.1_g000016
rosa_roxburghii Rroxscaffold_5G00379860
rosa_rugosa Rorug04G0313300
rosa_samantha Rh4AG364300 Rh4BG375400 Rh4CG389500 Rh4DG370000
rosa_wichuraiana Rw0G007240 Rw0G016790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 250
AccBSI CCGCTC 1 cut(s) 141
AccII CGCG 2 cut(s) 348, 645
AciI CCGC 6 cut(s) 23, 54, 139, 254, 266, 993
AcoI YGGCCR 1 cut(s) 136
AcsI RAATTY 2 cut(s) 397, 694
AcuI CTGAAG 1 cut(s) 93
AfaI GTAC 5 cut(s) 192, 429, 472, 726, 769
AgsI TTSAA 4 cut(s) 49, 331, 628, 1010
AjiI CACGTC 1 cut(s) 154
AleI CACNNNNGTG 2 cut(s) 487, 784
Alw26I GTCTC 2 cut(s) 53, 166
AoxI GGCC 3 cut(s) 136, 541, 838
ApeKI GCWGC 8 cut(s) 100, 200, 256, 301, 365, 464, 662, 761
ApoI RAATTY 2 cut(s) 397, 694
Asp700I GAANNNNTTC 1 cut(s) 968
AsuII TTCGAA 2 cut(s) 81, 962
AsuNHI GCTAGC 1 cut(s) 196
BaeGI GKGCMC 1 cut(s) 253
BanI GGYRCC 1 cut(s) 250
BbsI GAAGAC 2 cut(s) 45, 933
BbvI GCAGC 8 cut(s) 112, 187, 243, 288, 352, 476, 649, 773
BccI CCATC 7 cut(s) 236, 332, 372, 376, 629, 669, 673
BceAI ACGGC 4 cut(s) 143, 151, 548, 845
BciVI GTATCC 1 cut(s) 932
BcoDI GTCTC 2 cut(s) 53, 166
BfaI CTAG 3 cut(s) 197, 468, 765
BfuI GTATCC 1 cut(s) 932
BglI GCCNNNNNGGC 1 cut(s) 998
BlpI GCTNAGC 1 cut(s) 305
BmcAI AGTACT 2 cut(s) 472, 769
BmgBI CACGTC 1 cut(s) 154
BmiI GGNNCC 4 cut(s) 21, 252, 445, 742
BmrI ACTGGG 2 cut(s) 483, 780
BmsI GCATC 5 cut(s) 288, 466, 763, 979, 993
BmtI GCTAGC 1 cut(s) 200
BmuI ACTGGG 2 cut(s) 483, 780
BpiI GAAGAC 2 cut(s) 45, 933
Bpu10I CCTNAGC 1 cut(s) 996
Bpu1102I GCTNAGC 1 cut(s) 305
Bpu14I TTCGAA 2 cut(s) 81, 962
Bsa29I ATCGAT 1 cut(s) 9
BsaI GGTCTC 1 cut(s) 53
BsaWI WCCGGW 1 cut(s) 167
BsaXI ACNNNNNCTCC 8 cut(s) 125, 155, 306, 336, 603, 633, 900, 930
Bse118I RCCGGY 1 cut(s) 62
Bse1I ACTGG 2 cut(s) 478, 775
Bse3DI GCAATG 2 cut(s) 452, 749
BseCI ATCGAT 1 cut(s) 9
BseGI GGATG 6 cut(s) 241, 383, 387, 680, 684, 925
BseMI GCAATG 2 cut(s) 452, 749
BseMII CTCAG 2 cut(s) 136, 191
BseNI ACTGG 2 cut(s) 478, 775
BseRI GAGGAG 2 cut(s) 540, 837
BseSI GKGCMC 1 cut(s) 253
BseX3I CGGCCG 1 cut(s) 136
BseXI GCAGC 8 cut(s) 112, 187, 243, 288, 352, 476, 649, 773
Bsh1236I CGCG 2 cut(s) 348, 645
Bsh1285I CGRYCG 1 cut(s) 139
BshFI GGCC 3 cut(s) 138, 543, 840
BshNI GGYRCC 1 cut(s) 250
BshVI ATCGAT 1 cut(s) 9
BsiEI CGRYCG 1 cut(s) 139
BsiSI CCGG 2 cut(s) 63, 168
BsmAI GTCTC 2 cut(s) 53, 166
BsmBI CGTCTC 1 cut(s) 166
BsmI GAATGC 1 cut(s) 259
BsnI GGCC 3 cut(s) 138, 543, 840
Bso31I GGTCTC 1 cut(s) 53
Bsp119I TTCGAA 2 cut(s) 81, 962
Bsp1286I GDGCHC 1 cut(s) 253
Bsp1407I TGTACA 2 cut(s) 427, 724
Bsp143I GATC 4 cut(s) 6, 10, 402, 699
Bsp1720I GCTNAGC 1 cut(s) 305
BspACI CCGC 6 cut(s) 23, 54, 139, 254, 266, 993
BspANI GGCC 3 cut(s) 138, 543, 840
BspCNI CTCAG 2 cut(s) 135, 190
BspDI ATCGAT 1 cut(s) 9
BspFNI CGCG 2 cut(s) 348, 645
BspLI GGNNCC 4 cut(s) 21, 252, 445, 742
BspOI GCTAGC 1 cut(s) 200
BspT104I TTCGAA 2 cut(s) 81, 962
BspT107I GGYRCC 1 cut(s) 250
BspTNI GGTCTC 1 cut(s) 53
BsrBI CCGCTC 1 cut(s) 141
BsrDI GCAATG 2 cut(s) 452, 749
BsrFI RCCGGY 1 cut(s) 62
BsrGI TGTACA 2 cut(s) 427, 724
BsrI ACTGG 2 cut(s) 478, 775
BssAI RCCGGY 1 cut(s) 62
BssMI GATC 4 cut(s) 6, 10, 402, 699
Bst4CI ACNGT 2 cut(s) 230, 946
Bst6I CTCTTC 3 cut(s) 50, 76, 169
BstAUI TGTACA 2 cut(s) 427, 724
BstBI TTCGAA 2 cut(s) 81, 962
BstC8I GCNNGC 7 cut(s) 105, 198, 271, 370, 541, 667, 838
BstDEI CTNAG 4 cut(s) 122, 177, 305, 996
BstF5I GGATG 6 cut(s) 241, 383, 387, 680, 684, 925
BstFNI CGCG 2 cut(s) 348, 645
BstKTI GATC 4 cut(s) 9, 13, 405, 702
BstMAI GTCTC 2 cut(s) 53, 166
BstMBI GATC 4 cut(s) 6, 10, 402, 699
BstMCI CGRYCG 1 cut(s) 139
BstMWI GCNNNNNNNGC 1 cut(s) 998
BstSLI GKGCMC 1 cut(s) 253
BstUI CGCG 2 cut(s) 348, 645
BstV1I GCAGC 8 cut(s) 112, 187, 243, 288, 352, 476, 649, 773
BstV2I GAAGAC 2 cut(s) 45, 933
BstZI CGGCCG 1 cut(s) 136
Bsu15I ATCGAT 1 cut(s) 9
BsuI GTATCC 1 cut(s) 932
BsuRI GGCC 3 cut(s) 138, 543, 840
BsuTUI ATCGAT 1 cut(s) 9
BtrI CACGTC 1 cut(s) 154
BtsCI GGATG 6 cut(s) 241, 383, 387, 680, 684, 925
BtsI GCAGTG 1 cut(s) 280
BtsIMutI CAGTG 2 cut(s) 280, 951
Cac8I GCNNGC 7 cut(s) 105, 198, 271, 370, 541, 667, 838
Cfr10I RCCGGY 1 cut(s) 62
ClaI ATCGAT 1 cut(s) 9
Csp6I GTAC 5 cut(s) 191, 428, 471, 725, 768
CviAII CATG 3 cut(s) 410, 707, 905
CviQI GTAC 5 cut(s) 191, 428, 471, 725, 768
DdeI CTNAG 4 cut(s) 122, 177, 305, 996
DpnI GATC 4 cut(s) 8, 12, 404, 701
DpnII GATC 4 cut(s) 6, 10, 402, 699
EaeI YGGCCR 1 cut(s) 136
EagI CGGCCG 1 cut(s) 136
Eam1104I CTCTTC 3 cut(s) 50, 76, 169
EarI CTCTTC 3 cut(s) 50, 76, 169
EclXI CGGCCG 1 cut(s) 136
Eco31I GGTCTC 1 cut(s) 53
Eco52I CGGCCG 1 cut(s) 136
Eco57I CTGAAG 1 cut(s) 93
Esp3I CGTCTC 1 cut(s) 166
FaeI CATG 3 cut(s) 413, 710, 908
FatI CATG 3 cut(s) 409, 706, 904
FokI GGATG 6 cut(s) 248, 390, 394, 687, 691, 932
FspBI CTAG 3 cut(s) 197, 468, 765
HaeIII GGCC 3 cut(s) 138, 543, 840
HapII CCGG 2 cut(s) 63, 168
Hin1II CATG 3 cut(s) 413, 710, 908
HindIII AAGCTT 2 cut(s) 419, 716
HinfI GANTC 5 cut(s) 68, 83, 209, 547, 844
HpaII CCGG 2 cut(s) 63, 168
Hpy166II GTNNAC 2 cut(s) 494, 791
Hpy188I TCNGA 3 cut(s) 19, 125, 974
Hpy8I GTNNAC 2 cut(s) 494, 791
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 6 cut(s) 158, 503, 800, 902, 929, 1004
HpyCH4III ACNGT 2 cut(s) 230, 946
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 5 cut(s) 259, 353, 457, 650, 754
HpyF10VI GCNNNNNNNGC 1 cut(s) 998
HpyF3I CTNAG 4 cut(s) 122, 177, 305, 996
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 3 cut(s) 413, 710, 908
Kzo9I GATC 4 cut(s) 6, 10, 402, 699
LmnI GCTCC 7 cut(s) 19, 146, 314, 512, 611, 809, 908
Lsp1109I GCAGC 8 cut(s) 112, 187, 243, 288, 352, 476, 649, 773
LweI GCATC 5 cut(s) 288, 466, 763, 979, 993
MaeI CTAG 3 cut(s) 197, 468, 765
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 170
MalI GATC 4 cut(s) 8, 12, 404, 701
MbiI CCGCTC 1 cut(s) 141
MboI GATC 4 cut(s) 6, 10, 402, 699
MboII GAAGA 8 cut(s) 37, 50, 63, 156, 251, 343, 640, 938
MfeI CAATTG 2 cut(s) 485, 782
MhlI GDGCHC 1 cut(s) 253
MlyI GAGTC 3 cut(s) 62, 541, 838
MnlI CCTC 9 cut(s) 53, 124, 127, 155, 499, 561, 796, 858, 874
MroXI GAANNNNTTC 1 cut(s) 968
MseI TTAA 5 cut(s) 324, 423, 600, 621, 720
MslI CAYNNNNRTG 2 cut(s) 487, 784
MspA1I CMGCKG 1 cut(s) 256
MspI CCGG 2 cut(s) 63, 168
MunI CAATTG 2 cut(s) 485, 782
Mva1269I GAATGC 1 cut(s) 259
MvnI CGCG 2 cut(s) 348, 645
MwoI GCNNNNNNNGC 1 cut(s) 998
NdeII GATC 4 cut(s) 6, 10, 402, 699
NheI GCTAGC 1 cut(s) 196
NlaIII CATG 3 cut(s) 413, 710, 908
NlaIV GGNNCC 4 cut(s) 21, 252, 445, 742
NmeAIII GCCGAG 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 170
NspV TTCGAA 2 cut(s) 81, 962
OliI CACNNNNGTG 2 cut(s) 487, 784
PctI GAATGC 1 cut(s) 259
PdmI GAANNNNTTC 1 cut(s) 968
PfeI GAWTC 2 cut(s) 83, 209
PleI GAGTC 3 cut(s) 62, 541, 838
PpsI GAGTC 3 cut(s) 62, 541, 838
PspN4I GGNNCC 4 cut(s) 21, 252, 445, 742
RsaI GTAC 5 cut(s) 192, 429, 472, 726, 769
RsaNI GTAC 5 cut(s) 191, 428, 471, 725, 768
RseI CAYNNNNRTG 2 cut(s) 487, 784
SaqAI TTAA 5 cut(s) 324, 423, 600, 621, 720
Sau3AI GATC 4 cut(s) 6, 10, 402, 699
ScaI AGTACT 2 cut(s) 472, 769
SchI GAGTC 3 cut(s) 62, 541, 838
SduI GDGCHC 1 cut(s) 253
SfaNI GCATC 5 cut(s) 288, 466, 763, 979, 993
SfuI TTCGAA 2 cut(s) 81, 962
SmiMI CAYNNNNRTG 2 cut(s) 487, 784
SsiI CCGC 6 cut(s) 23, 54, 139, 254, 266, 993
SspMI CTAG 3 cut(s) 197, 468, 765
TaaI ACNGT 2 cut(s) 230, 946
TaiI ACGT 1 cut(s) 156
TaqI TCGA 7 cut(s) 9, 81, 212, 460, 757, 955, 962
TatI WGTACW 4 cut(s) 427, 470, 724, 767
TauI GCSGC 5 cut(s) 25, 56, 141, 269, 995
TfiI GAWTC 2 cut(s) 83, 209
Tru1I TTAA 5 cut(s) 324, 423, 600, 621, 720
Tru9I TTAA 5 cut(s) 324, 423, 600, 621, 720
TscAI CASTG 2 cut(s) 280, 951
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 8 cut(s) 100, 200, 256, 301, 365, 464, 662, 761
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 3 cut(s) 222, 252, 595
TspRI CASTG 2 cut(s) 280, 951
XapI RAATTY 2 cut(s) 397, 694
XmnI GAANNNNTTC 1 cut(s) 968
XspI CTAG 3 cut(s) 197, 468, 765
ZrmI AGTACT 2 cut(s) 472, 769
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.