Prupe.1G282400_v2.0.a1

26S proteasome non-ATPase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013346
Physical Location & Seq
Reverse (-)
28515255 .. 28517051
1797 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G282400.1

Sequence Viewer

Length: 735 bp
ATGGACATGGAGATCGATCCTCCCAACTCATCCGAGCAGCAACCCAAAGCCGAAGACTTGTTTAAAGCCGCTGAGGCTGGTGATGCTTCGGTGTTCAAATCGCTCTGTCAAAAGCAGCTTGCCGAAGCTTTGTCTCTCAGAAACGATGACGCCCGCTCCGTCCTCCACGTCGCCGTCTCTTCGAGTAACTCTGAGGTGGTGAAGGTACTACTAGCTGCTGATGAATCAAAAAATGTGATAAACAGTGTGGATGAAGATGGATGGTCACCGCTTCATTCTGCTGCCAGCATTGGGAATTCTGGAATAGTTGAGCTGTTGCTAAGCAAAGGAGCTGATGTTAATTTGAAAAATGGTGGGGGTCGCTCTGCCCTTCATTATGCTGCCAGCAAGGGATGGTTGGAGATTGCTCAAATTTTGATCTCACATGGGGCAAAGGTTAATCTGAAAGACAAGGTTGGTTGCACCCCATTGCACCGGGCAGCTAGCACTGCGAAATCACAGTTGTGTGAACTTTTAATTGAGGAAGGCGCAGAGGTTGACGCTGTTGATAGATTGGGTCAGACTCCTCTTATGAGTGCAGTGATTTGCTATAACCAAGAGGTTTCTCTCCTTCTAATAAGGCACGGAGCAGATGTTGATGTGGAAGACAAGGAAGGATACACAGTGCTTGGTCGAGCTTCAAAAGAATTCAGACCATTATTGATTGATGCTGCTAAGGCCATGCGCGAAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5

Protein Analysis

245

Amino Acids

25.99

Weight (kDa)

5.03

Isoelectric Point (pI)

30.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013346)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G03430
fragaria_vesca FvH4_4g30470
malus_domestica MD13G1065800.v1.1 MD16G1064400.v1.1
prunus_persica Prupe.1G282400_v2.0.a1
pyrus_communis pycom13g05800 pycom16g05620
rosa_chinensis RchiOBHm_Chr4g0438821
rosa_laevigata RLG00000006328
rosa_multiflora Rmu_sc0002505.1_g000016
rosa_roxburghii Rroxscaffold_5G00379860
rosa_rugosa Rorug04G0313300
rosa_samantha Rh4AG364300 Rh4BG375400 Rh4CG389500 Rh4DG370000
rosa_wichuraiana Rw0G007240 Rw0G016790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 156
AccII CGCG 1 cut(s) 726
AciI CCGC 3 cut(s) 69, 154, 269
AclWI GGATC 1 cut(s) 11
AcsI RAATTY 3 cut(s) 295, 411, 686
AcyI GRCGYC 1 cut(s) 150
AfaI GTAC 1 cut(s) 207
AfiI CCNNNNNNNGG 1 cut(s) 291
AgsI TTSAA 3 cut(s) 97, 346, 681
AjiI CACGTC 1 cut(s) 169
AleI CACNNNNGTG 1 cut(s) 502
AluBI AGCT 7 cut(s) 118, 128, 215, 313, 332, 482, 677
AluI AGCT 7 cut(s) 118, 128, 215, 313, 332, 482, 677
Alw26I GTCTC 2 cut(s) 138, 181
AlwI GGATC 1 cut(s) 11
AoxI GGCC 1 cut(s) 717
ApeKI GCWGC 7 cut(s) 37, 115, 215, 281, 380, 479, 710
ApoI RAATTY 3 cut(s) 295, 411, 686
AspLEI GCGC 2 cut(s) 530, 726
AsuC2I CCSGG 1 cut(s) 476
AsuHPI GGTGA 3 cut(s) 92, 211, 258
AsuNHI GCTAGC 1 cut(s) 482
BbsI GAAGAC 2 cut(s) 60, 651
BbvCI CCTCAGC 1 cut(s) 72
BbvI GCAGC 7 cut(s) 49, 127, 202, 268, 367, 491, 697
BccI CCATC 3 cut(s) 251, 255, 387
BceAI ACGGC 1 cut(s) 158
BciVI GTATCC 1 cut(s) 650
BcnI CCSGG 1 cut(s) 476
BcoDI GTCTC 2 cut(s) 138, 181
BfaI CTAG 2 cut(s) 212, 483
BfuI GTATCC 1 cut(s) 650
BglI GCCNNNNNGGC 1 cut(s) 74
BisI GCNGC 8 cut(s) 38, 69, 116, 216, 282, 381, 480, 711
BlpI GCTNAGC 1 cut(s) 320
BlsI GCNGC 8 cut(s) 39, 70, 117, 217, 283, 382, 481, 712
Bme1390I CCNGG 1 cut(s) 476
BmgBI CACGTC 1 cut(s) 169
BmrFI CCNGG 1 cut(s) 476
BmsI GCATC 2 cut(s) 73, 697
BmtI GCTAGC 1 cut(s) 486
BpiI GAAGAC 2 cut(s) 60, 651
Bpu10I CCTNAGC 2 cut(s) 72, 714
Bpu1102I GCTNAGC 1 cut(s) 320
BpuMI CCSGG 1 cut(s) 476
Bsa29I ATCGAT 1 cut(s) 15
BsaHI GRCGYC 1 cut(s) 150
BsaXI ACNNNNNCTCC 6 cut(s) 140, 170, 321, 351, 618, 648
Bsc4I CCNNNNNNNGG 1 cut(s) 291
Bse3DI GCAATG 1 cut(s) 467
BseCI ATCGAT 1 cut(s) 15
BseGI GGATG 4 cut(s) 29, 256, 266, 398
BseLI CCNNNNNNNGG 1 cut(s) 291
BseMI GCAATG 1 cut(s) 467
BseMII CTCAG 3 cut(s) 63, 151, 183
BseRI GAGGAG 1 cut(s) 555
BseXI GCAGC 7 cut(s) 49, 127, 202, 268, 367, 491, 697
BsgI GTGCAG 1 cut(s) 597
Bsh1236I CGCG 1 cut(s) 726
BshFI GGCC 1 cut(s) 719
BshVI ATCGAT 1 cut(s) 15
BsiSI CCGG 1 cut(s) 475
BslI CCNNNNNNNGG 1 cut(s) 291
BsmAI GTCTC 2 cut(s) 138, 181
BsmBI CGTCTC 1 cut(s) 181
BsnI GGCC 1 cut(s) 719
Bsp143I GATC 3 cut(s) 12, 16, 417
Bsp1720I GCTNAGC 1 cut(s) 320
BspACI CCGC 3 cut(s) 69, 154, 269
BspANI GGCC 1 cut(s) 719
BspCNI CTCAG 3 cut(s) 64, 150, 184
BspDI ATCGAT 1 cut(s) 15
BspFNI CGCG 1 cut(s) 726
BspOI GCTAGC 1 cut(s) 486
BspPI GGATC 1 cut(s) 11
BsrBI CCGCTC 1 cut(s) 156
BsrDI GCAATG 1 cut(s) 467
BssMI GATC 3 cut(s) 12, 16, 417
BssNI GRCGYC 1 cut(s) 150
Bst4CI ACNGT 3 cut(s) 245, 501, 664
Bst6I CTCTTC 1 cut(s) 184
BstACI GRCGYC 1 cut(s) 150
BstC8I GCNNGC 5 cut(s) 120, 154, 286, 385, 484
BstDEI CTNAG 5 cut(s) 72, 137, 192, 320, 714
BstEII GGTNACC 1 cut(s) 264
BstF5I GGATG 4 cut(s) 29, 256, 266, 398
BstFNI CGCG 1 cut(s) 726
BstHHI GCGC 2 cut(s) 530, 726
BstKTI GATC 3 cut(s) 15, 19, 420
BstMAI GTCTC 2 cut(s) 138, 181
BstMBI GATC 3 cut(s) 12, 16, 417
BstMWI GCNNNNNNNGC 4 cut(s) 74, 83, 488, 716
BstPI GGTNACC 1 cut(s) 264
BstSCI CCNGG 1 cut(s) 474
BstUI CGCG 1 cut(s) 726
BstV1I GCAGC 7 cut(s) 49, 127, 202, 268, 367, 491, 697
BstV2I GAAGAC 2 cut(s) 60, 651
Bsu15I ATCGAT 1 cut(s) 15
BsuI GTATCC 1 cut(s) 650
BsuRI GGCC 1 cut(s) 719
BsuTUI ATCGAT 1 cut(s) 15
BtrI CACGTC 1 cut(s) 169
BtsCI GGATG 4 cut(s) 29, 256, 266, 398
BtsI GCAGTG 2 cut(s) 486, 585
BtsIMutI CAGTG 4 cut(s) 250, 486, 585, 669
Cac8I GCNNGC 5 cut(s) 120, 154, 286, 385, 484
CfoI GCGC 2 cut(s) 530, 726
ClaI ATCGAT 1 cut(s) 15
CseI GACGC 2 cut(s) 158, 548
Csp6I GTAC 1 cut(s) 206
CviAII CATG 3 cut(s) 7, 425, 721
CviQI GTAC 1 cut(s) 206
DdeI CTNAG 5 cut(s) 72, 137, 192, 320, 714
DpnI GATC 3 cut(s) 14, 18, 419
DpnII GATC 3 cut(s) 12, 16, 417
DraI TTTAAA 1 cut(s) 64
Eam1104I CTCTTC 1 cut(s) 184
EarI CTCTTC 1 cut(s) 184
Eco91I GGTNACC 1 cut(s) 264
EcoO65I GGTNACC 1 cut(s) 264
EcoRI GAATTC 2 cut(s) 295, 686
Esp3I CGTCTC 1 cut(s) 181
FaeI CATG 3 cut(s) 10, 428, 724
FaiI YATR 6 cut(s) 8, 378, 426, 572, 591, 722
FatI CATG 3 cut(s) 6, 424, 720
FauI CCCGC 1 cut(s) 161
Fnu4HI GCNGC 8 cut(s) 38, 69, 116, 216, 282, 381, 480, 711
FokI GGATG 4 cut(s) 16, 263, 273, 405
Fsp4HI GCNGC 8 cut(s) 38, 69, 116, 216, 282, 381, 480, 711
FspBI CTAG 2 cut(s) 212, 483
GlaI GCGC 2 cut(s) 529, 725
GluI GCNGC 8 cut(s) 38, 69, 116, 216, 282, 381, 480, 711
HaeIII GGCC 1 cut(s) 719
HapII CCGG 1 cut(s) 475
HgaI GACGC 2 cut(s) 158, 548
HhaI GCGC 2 cut(s) 530, 726
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 3 cut(s) 10, 428, 724
Hin6I GCGC 2 cut(s) 528, 724
HinP1I GCGC 2 cut(s) 528, 724
HincII GTYRAC 1 cut(s) 538
HindII GTYRAC 1 cut(s) 538
HindIII AAGCTT 1 cut(s) 126
HinfI GANTC 2 cut(s) 224, 562
HpaII CCGG 1 cut(s) 475
HphI GGTGA 3 cut(s) 92, 211, 258
Hpy166II GTNNAC 2 cut(s) 509, 538
Hpy188I TCNGA 6 cut(s) 34, 140, 193, 444, 561, 692
Hpy188III TCNNGA 1 cut(s) 300
Hpy8I GTNNAC 2 cut(s) 509, 538
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 6 cut(s) 196, 380, 518, 620, 647, 722
HpyCH4III ACNGT 3 cut(s) 245, 501, 664
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 3 cut(s) 462, 472, 578
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 83, 488, 716
HpyF3I CTNAG 5 cut(s) 72, 137, 192, 320, 714
HpySE526I ACGT 1 cut(s) 168
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 3 cut(s) 10, 428, 724
HspAI GCGC 2 cut(s) 528, 724
Kzo9I GATC 3 cut(s) 12, 16, 417
LmnI GCTCC 3 cut(s) 161, 329, 626
LpnPI CCDG 5 cut(s) 63, 285, 298, 397, 488
Lsp1109I GCAGC 7 cut(s) 49, 127, 202, 268, 367, 491, 697
LweI GCATC 2 cut(s) 73, 697
MaeI CTAG 2 cut(s) 212, 483
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 2 cut(s) 185, 264
MalI GATC 3 cut(s) 14, 18, 419
MbiI CCGCTC 1 cut(s) 156
MboI GATC 3 cut(s) 12, 16, 417
MboII GAAGA 4 cut(s) 65, 171, 266, 656
MluCI AATT 5 cut(s) 295, 340, 411, 516, 686
MlyI GAGTC 1 cut(s) 556
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 8 cut(s) 30, 67, 173, 187, 514, 526, 576, 592
MseI TTAA 4 cut(s) 63, 339, 438, 515
MslI CAYNNNNRTG 1 cut(s) 502
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 1 cut(s) 475
MspR9I CCNGG 1 cut(s) 476
MvnI CGCG 1 cut(s) 726
MwoI GCNNNNNNNGC 4 cut(s) 74, 83, 488, 716
NciI CCSGG 1 cut(s) 476
NdeII GATC 3 cut(s) 12, 16, 417
NheI GCTAGC 1 cut(s) 482
NlaIII CATG 3 cut(s) 10, 428, 724
NmuCI GTSAC 1 cut(s) 264
OliI CACNNNNGTG 1 cut(s) 502
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PfeI GAWTC 1 cut(s) 224
PkrI GCNGC 8 cut(s) 39, 70, 117, 217, 283, 382, 481, 712
PleI GAGTC 1 cut(s) 556
PpsI GAGTC 1 cut(s) 556
PspEI GGTNACC 1 cut(s) 264
RsaI GTAC 1 cut(s) 207
RsaNI GTAC 1 cut(s) 206
RseI CAYNNNNRTG 1 cut(s) 502
SaqAI TTAA 4 cut(s) 63, 339, 438, 515
SatI GCNGC 8 cut(s) 38, 69, 116, 216, 282, 381, 480, 711
Sau3AI GATC 3 cut(s) 12, 16, 417
SchI GAGTC 1 cut(s) 556
ScrFI CCNGG 1 cut(s) 476
SfaNI GCATC 2 cut(s) 73, 697
SmiMI CAYNNNNRTG 1 cut(s) 502
Sse9I AATT 5 cut(s) 295, 340, 411, 516, 686
SsiI CCGC 3 cut(s) 69, 154, 269
SspMI CTAG 2 cut(s) 212, 483
StyD4I CCNGG 1 cut(s) 474
TaaI ACNGT 3 cut(s) 245, 501, 664
TaiI ACGT 1 cut(s) 171
TaqI TCGA 3 cut(s) 15, 182, 673
TasI AATT 5 cut(s) 295, 340, 411, 516, 686
TauI GCSGC 1 cut(s) 71
TfiI GAWTC 1 cut(s) 224
Tru1I TTAA 4 cut(s) 63, 339, 438, 515
Tru9I TTAA 4 cut(s) 63, 339, 438, 515
TscAI CASTG 4 cut(s) 250, 493, 585, 669
TseFI GTSAC 1 cut(s) 264
TseI GCWGC 7 cut(s) 37, 115, 215, 281, 380, 479, 710
Tsp45I GTSAC 1 cut(s) 264
TspDTI ATGAA 4 cut(s) 237, 263, 267, 362
TspGWI ACGGA 2 cut(s) 148, 639
TspRI CASTG 4 cut(s) 250, 493, 585, 669
XapI RAATTY 3 cut(s) 295, 411, 686
XspI CTAG 2 cut(s) 212, 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.