Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016566

Physical Location & Seq

Genomic Coordinates Forward (+)

1181512 .. 1183703

Gene Structure 2192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G03880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1893 bp

ATGAAGTCAGTAATGTCAAAGATCAAACTTTTTAGACCAGTCGTCACGTTACGTTGTTCTTACAGCTCCACAGATCAAACTCTTCTTCTTAGCGAATTTACCAGACTCTGTTACCAGAGAGACCTTCCCAGAGCTATGAAAGCAATGGATTCATTGCAAAGTCATGGTCTTTGGGCAGACTCTGCAACTTATTCTGAGCTTATCAAGTGTTGTATATCTAATAGAGCTGTTCATGAAGGGAATCTCATTTGTCGTCATTTATACTTCAATGGTCATCGACCAATGATGTTTCTGGTTAATGTTCTGATCAATATGTATGTAAAATTCAATCTTTTGAATGATGCTCACCAACTGTTCGATCAAATGCCTCAAAGGAATGTTATTTCTTGGACTACGATGATTTCTGCTTATTCTAAGTGTAAGATTCATCAAAAGGCTTTGGAGCTTTTGGTTTTGATGTTGAGAGATAATGTGAGGCCTAATGTGTATACTTACTCTTCTGTTTTGAGATCTTGCAATGGTATGTCTGATGTTAGAATGCTTCATTGTGGGATTATTAAGGAGGGGTTGGAGTCTGATGTTTTTGTTAGGAGTGCTTTGATTGATGTGTTTGCTAAACTGGGTGAGCCGGAGGATGCTCTTTCGGTTTTCGATGAAATGGTTACAGGTGATGCGATTGTTTGGAACTCGATCATTGGTGGGTTTGCTCAGAATAGTAGAAGCGATGTAGCTTTGGAGCTTTTTAAGAGGATGAAGAGAGCTGGTTTCATTGCGGAGCAGGCTACGTTGACTAGCGTATTGAGGGCTTGTACTGGTTTGGCTCTGTTGGAGCTTGGGATGCAAGCTCATGTTCATATCGTGAAATATGACCAAGACTTGATACTCAACAACGCACTCGTGGACATGTATTGCAAGTGTGGGAGTTTGGAGGATGCTCTCCGTGTGTTCAACCAGATGAAGGAGAGAGATGTGATTACATGGAGCACTATGATTTCAGGGTTGGCACAGAATGGTTATAGCCAGGAGGCACTGAAGTTGTTTGAGCGTATGAAATCTTCTGGGACGAAGCCAAACTACATTACGATTGTCGGGGTTCTCTTTGCTTGCAGCCACGCAGGGCTCCTGGAAGATGGTTGGTACTACTTCAGATCAATGAAGAAACTTTATGGAATCGATCCAGTGAGGGAACATTATGGTTGCATGATTGATCTGCTTGGAAAAGCTGGAAAGCTCGACGATGCAGTGAAGCTGTTAAATGAAATGGAGTGTGAGCCAGATGCTGTGACATGGAGAACTTTGCTTGGTGCTTGTAGGGTTCAAAGAAACATGGTGCTAGCGGAGTATGCAGCTAAAAAGGTCATAGCACTCGATCCCGAGGATGCAGGAACTTACACACTATTGTCTAACATATACGCAAACTCTCAGAAATGGGACAGTGTTGAAGAAATTCGGACACGAATGAGAGACAGAGGAATCAAGAAAGAACCTGGATGCAGCTGGATCGAAGTAAACAAACAGATTCATGCTTTTATAATTGGAGACAATTCTCACCCACAGATAGTTGAAGTCAGTAAGAAGCTGAACCAATTGATCCATAGACTCACTGGTATTGGCTATGTTCCTGAAACAAACTTTGTGCTACAAGATCTTGAAGGTGAACAAATGGAAGATTCACTTAGACATCACAGTGAGAAACTGGCTTTAGCCTTTGGCTTGATGACATTACCTATTGAGAAAGTCATTAGGATAAGAAAGAATCTGAGAATATGTGGGGATTGTCATGTGTTTTGCAAGCTCGCATCGAAGCTTGAAATCCGCAGTATCGTTATACGAGATCCGATCCGTTACCATCATTTCCAGGATGGCAAATGTTCTTGTGGTGACTACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

630

Amino Acids

71.7

Weight (kDa)

8.24

Isoelectric Point (pI)

37.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	125 - 172	7.7e-12	PPR repeat family
PPR_2	PF13041	224 - 270	3.9e-07	PPR repeat family
PPR	PF01535	227 - 256	7.7e-07	PPR repeat
PPR_2	PF13041	297 - 324	6.6e-06	PPR repeat family
PPR	PF01535	297 - 324	1.9e-06	PPR repeat
PPR_1	PF12854	297 - 320	5.8e-06	PPR repeat
PPR_2	PF13041	322 - 368	1.4e-10	PPR repeat family
PPR_1	PF12854	322 - 351	2.7e-07	PPR repeat
PPR	PF01535	325 - 354	2.1e-09	PPR repeat
PPR_1	PF12854	390 - 422	1.4e-06	PPR repeat
PPR_2	PF13041	398 - 437	8.8e-08	PPR repeat family
E_motif	PF20431	442 - 502	9.6e-22	E motif
DYW_deaminase	PF14432	538 - 630	2.1e-36	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03880
fragaria_vesca	FvH4_2g16980
malus_domestica	MD05G1142000.v1.1 MD05G1142900.v1.1
prunus_persica	Prupe.8G181700_v2.0.a1
pyrus_communis	pycom05g13740
rosa_chinensis	RchiOBHm_Chr6g0281171
rosa_laevigata	RLG00000012988
rosa_multiflora	Rmu_sc0001705.1_g000021 Rmu_sc0035650.1_g000002
rosa_roxburghii	Rroxscaffold_7G00187240
rosa_rugosa	Rorug06G0139500
rosa_samantha	Rh6DG245900
rosa_wichuraiana	Rw6G021820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1532
AccI	GTMKAC	1 cut(s)	488
AciI	CCGC	3 cut(s)	773, 1337, 1816
AclWI	GGATC	6 cut(s)	1169, 1364, 1508, 1585, 1829, 1834
AcsI	RAATTY	3 cut(s)	95, 323, 1446
AcuI	CTGAAG	2 cut(s)	1052, 1129
AfaI	GTAC	2 cut(s)	811, 1139
AfiI	CCNNNNNNNGG	1 cut(s)	958
AflIII	ACRYGT	1 cut(s)	903
AgsI	TTSAA	9 cut(s)	268, 328, 337, 949, 1319, 1442, 1565, 1652, 1811
AhdI	GACNNNNNGTC	1 cut(s)	41
AjnI	CCWGG	4 cut(s)	1020, 1122, 1486, 1857
Alw21I	GWGCWC	1 cut(s)	986
Alw26I	GTCTC	3 cut(s)	114, 1458, 1533
AlwI	GGATC	6 cut(s)	1169, 1364, 1508, 1585, 1829, 1834
AlwNI	CAGNNNCTG	3 cut(s)	108, 182, 1280
Ama87I	CYCGRG	1 cut(s)	1373
AoxI	GGCC	1 cut(s)	476
ApeKI	GCWGC	3 cut(s)	1107, 1346, 1494
ApoI	RAATTY	3 cut(s)	95, 323, 1446
ArsI	GACNNNNNNTTYG	2 cut(s)	151, 183
Asp700I	GAANNNNTTC	1 cut(s)	1446
AsuHPI	GGTGA	6 cut(s)	338, 635, 680, 1541, 1667, 1892
AsuNHI	GCTAGC	1 cut(s)	1333
AvaI	CYCGRG	1 cut(s)	1373
BanII	GRGCYC	1 cut(s)	1122
BarI	GAAGNNNNNNTAC	4 cut(s)	1039, 1058, 1071, 1090
BauI	CACGAG	1 cut(s)	896
Bbv12I	GWGCWC	1 cut(s)	986
BbvI	GCAGC	3 cut(s)	1119, 1358, 1506
BccI	CCATC	3 cut(s)	1124, 1856, 1857
BcgI	CGANNNNNNTGC	2 cut(s)	1483, 1517
BciT130I	CCWGG	4 cut(s)	1022, 1124, 1488, 1859
BclI	TGATCA	1 cut(s)	306
BcoDI	GTCTC	3 cut(s)	114, 1458, 1533
BfaI	CTAG	2 cut(s)	792, 1334
BglII	AGATCT	2 cut(s)	509, 1645
BisI	GCNGC	3 cut(s)	1108, 1347, 1495
BlsI	GCNGC	3 cut(s)	1109, 1348, 1496
Bme1390I	CCNGG	4 cut(s)	1022, 1124, 1488, 1859
BmeRI	GACNNNNNGTC	1 cut(s)	41
BmeT110I	CYCGRG	1 cut(s)	1373
BmiI	GGNNCC	1 cut(s)	1121
BmrFI	CCNGG	4 cut(s)	1022, 1124, 1488, 1859
BmrI	ACTGGG	1 cut(s)	629
BmtI	GCTAGC	1 cut(s)	1337
BmuI	ACTGGG	1 cut(s)	629
Bsa29I	ATCGAT	1 cut(s)	1173
BsaI	GGTCTC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	1374
Bsc4I	CCNNNNNNNGG	1 cut(s)	958
Bse1I	ACTGG	7 cut(s)	38, 624, 817, 1178, 1609, 1701, 1892
Bse3DI	GCAATG	4 cut(s)	150, 152, 523, 768
BseBI	CCWGG	4 cut(s)	1022, 1124, 1488, 1859
BseCI	ATCGAT	1 cut(s)	1173
BseDI	CCNNGG	1 cut(s)	1374
BseGI	GGATG	7 cut(s)	640, 756, 843, 937, 1384, 1496, 1867
BseLI	CCNNNNNNNGG	1 cut(s)	958
BseMI	GCAATG	4 cut(s)	150, 152, 523, 768
BseMII	CTCAG	4 cut(s)	186, 722, 1436, 1751
BseNI	ACTGG	7 cut(s)	38, 624, 817, 1178, 1609, 1701, 1892
BseXI	GCAGC	3 cut(s)	1119, 1358, 1506
BshFI	GGCC	1 cut(s)	478
BshVI	ATCGAT	1 cut(s)	1173
BsiHKAI	GWGCWC	1 cut(s)	986
BsiHKCI	CYCGRG	1 cut(s)	1373
BsiSI	CCGG	1 cut(s)	629
BslFI	GGGAC	2 cut(s)	1075, 1445
BslI	CCNNNNNNNGG	1 cut(s)	958
BsmAI	GTCTC	3 cut(s)	114, 1458, 1533
BsmFI	GGGAC	2 cut(s)	1075, 1445
BsmI	GAATGC	1 cut(s)	543
BsnI	GGCC	1 cut(s)	478
Bso31I	GGTCTC	1 cut(s)	114
BsoBI	CYCGRG	1 cut(s)	1373
Bsp1286I	GDGCHC	2 cut(s)	986, 1122
BspACI	CCGC	3 cut(s)	773, 1337, 1816
BspANI	GGCC	1 cut(s)	478
BspCNI	CTCAG	4 cut(s)	187, 721, 1435, 1752
BspDI	ATCGAT	1 cut(s)	1173
BspHI	TCATGA	1 cut(s)	232
BspLI	GGNNCC	1 cut(s)	1121
BspOI	GCTAGC	1 cut(s)	1337
BspPI	GGATC	6 cut(s)	1169, 1364, 1508, 1585, 1829, 1834
BspTNI	GGTCTC	1 cut(s)	114
BsrDI	GCAATG	4 cut(s)	150, 152, 523, 768
BsrI	ACTGG	7 cut(s)	38, 624, 817, 1178, 1609, 1701, 1892
BssECI	CCNNGG	1 cut(s)	1374
BssNAI	GTATAC	1 cut(s)	489
BssSI	CACGAG	1 cut(s)	896
Bst1107I	GTATAC	1 cut(s)	489
Bst2BI	CACGAG	1 cut(s)	896
Bst2UI	CCWGG	4 cut(s)	1022, 1124, 1488, 1859
Bst4CI	ACNGT	3 cut(s)	354, 1436, 1688
Bst6I	CTCTTC	3 cut(s)	87, 502, 749
BstAPI	GCANNNNNTGC	1 cut(s)	182
BstC8I	GCNNGC	6 cut(s)	780, 843, 1105, 1335, 1793, 1797
BstDEI	CTNAG	7 cut(s)	89, 195, 414, 708, 1422, 1676, 1760
BstF5I	GGATG	7 cut(s)	640, 756, 843, 937, 1384, 1496, 1867
BstMAI	GTCTC	3 cut(s)	114, 1458, 1533
BstMWI	GCNNNNNNNGC	5 cut(s)	140, 182, 779, 838, 1343
BstNI	CCWGG	4 cut(s)	1022, 1124, 1488, 1859
BstNSI	RCATGY	1 cut(s)	907
BstSCI	CCNGG	4 cut(s)	1020, 1122, 1486, 1857
BstV1I	GCAGC	3 cut(s)	1119, 1358, 1506
BstX2I	RGATCY	3 cut(s)	509, 1645, 1834
BstYI	RGATCY	3 cut(s)	509, 1645, 1834
BstZ17I	GTATAC	1 cut(s)	489
Bsu15I	ATCGAT	1 cut(s)	1173
BsuRI	GGCC	1 cut(s)	478
BsuTUI	ATCGAT	1 cut(s)	1173
BtgZI	GCGATG	1 cut(s)	738
BtsCI	GGATG	7 cut(s)	640, 756, 843, 937, 1384, 1496, 1867
BtsI	GCAGTG	1 cut(s)	1248
BtsIMutI	CAGTG	6 cut(s)	1028, 1185, 1248, 1441, 1602, 1693
Cac8I	GCNNGC	6 cut(s)	780, 843, 1105, 1335, 1793, 1797
CaiI	CAGNNNCTG	3 cut(s)	108, 182, 1280
CciI	TCATGA	1 cut(s)	232
ClaI	ATCGAT	1 cut(s)	1173
Csp6I	GTAC	2 cut(s)	810, 1138
CviQI	GTAC	2 cut(s)	810, 1138
DdeI	CTNAG	7 cut(s)	89, 195, 414, 708, 1422, 1676, 1760
DriI	GACNNNNNGTC	1 cut(s)	41
Eam1104I	CTCTTC	3 cut(s)	87, 502, 749
Eam1105I	GACNNNNNGTC	1 cut(s)	41
EarI	CTCTTC	3 cut(s)	87, 502, 749
Eco147I	AGGCCT	1 cut(s)	478
Eco24I	GRGCYC	1 cut(s)	1122
Eco31I	GGTCTC	1 cut(s)	114
Eco57I	CTGAAG	2 cut(s)	1052, 1129
Eco88I	CYCGRG	1 cut(s)	1373
EcoRII	CCWGG	4 cut(s)	1020, 1122, 1486, 1857
EcoT38I	GRGCYC	1 cut(s)	1122
FalI	AAGNNNNNCTT	2 cut(s)	1659, 1691
FaqI	GGGAC	2 cut(s)	1075, 1445
FbaI	TGATCA	1 cut(s)	306
FblI	GTMKAC	1 cut(s)	488
Fnu4HI	GCNGC	3 cut(s)	1108, 1347, 1495
FokI	GGATG	7 cut(s)	647, 763, 850, 944, 1391, 1503, 1874
FriOI	GRGCYC	1 cut(s)	1122
Fsp4HI	GCNGC	3 cut(s)	1108, 1347, 1495
FspBI	CTAG	2 cut(s)	792, 1334
GluI	GCNGC	3 cut(s)	1108, 1347, 1495
HaeIII	GGCC	1 cut(s)	478
HapII	CCGG	1 cut(s)	629
HincII	GTYRAC	1 cut(s)	789
HindII	GTYRAC	1 cut(s)	789
HindIII	AAGCTT	1 cut(s)	1805
HpaII	CCGG	1 cut(s)	629
HphI	GGTGA	6 cut(s)	338, 635, 680, 1541, 1667, 1892
Hpy166II	GTNNAC	5 cut(s)	489, 789, 901, 1510, 1658
Hpy188III	TCNNGA	6 cut(s)	233, 859, 1373, 1477, 1622, 1649
Hpy8I	GTNNAC	5 cut(s)	489, 789, 901, 1510, 1658
Hpy99I	CGWCG	1 cut(s)	1238
HpyAV	CCTTC	4 cut(s)	134, 230, 952, 1646
HpyCH4III	ACNGT	3 cut(s)	354, 1436, 1688
HpyCH4IV	ACGT	3 cut(s)	47, 52, 785
HpyF10VI	GCNNNNNNNGC	5 cut(s)	140, 182, 779, 838, 1343
HpyF3I	CTNAG	7 cut(s)	89, 195, 414, 708, 1422, 1676, 1760
HpySE526I	ACGT	3 cut(s)	47, 52, 785
Ksp22I	TGATCA	1 cut(s)	306
LmnI	GCTCC	7 cut(s)	71, 442, 736, 775, 829, 981, 1125
Lsp1109I	GCAGC	3 cut(s)	1119, 1358, 1506
MaeI	CTAG	2 cut(s)	792, 1334
MaeII	ACGT	3 cut(s)	47, 52, 785
MaeIII	GTNAC	7 cut(s)	43, 48, 110, 661, 1282, 1844, 1880
MboII	GAAGA	9 cut(s)	74, 77, 489, 766, 1047, 1139, 1168, 1454, 1679
MfeI	CAATTG	1 cut(s)	1586
MflI	RGATCY	3 cut(s)	509, 1645, 1834
MhlI	GDGCHC	2 cut(s)	986, 1122
MluCI	AATT	6 cut(s)	95, 323, 1446, 1533, 1543, 1586
MlyI	GAGTC	4 cut(s)	99, 173, 581, 1593
MmeI	TCCRAC	2 cut(s)	549, 807
MroXI	GAANNNNTTC	1 cut(s)	1446
MseI	TTAA	4 cut(s)	297, 558, 744, 1253
MslI	CAYNNNNRTG	1 cut(s)	1686
MspA1I	CMGCKG	1 cut(s)	1497
MspI	CCGG	1 cut(s)	629
MspR9I	CCNGG	4 cut(s)	1022, 1124, 1488, 1859
MunI	CAATTG	1 cut(s)	1586
Mva1269I	GAATGC	1 cut(s)	543
MvaI	CCWGG	4 cut(s)	1022, 1124, 1488, 1859
MwoI	GCNNNNNNNGC	5 cut(s)	140, 182, 779, 838, 1343
NheI	GCTAGC	1 cut(s)	1333
NlaIV	GGNNCC	1 cut(s)	1121
NmuCI	GTSAC	3 cut(s)	43, 1282, 1880
NspI	RCATGY	1 cut(s)	907
PagI	TCATGA	1 cut(s)	232
PceI	AGGCCT	1 cut(s)	478
PciI	ACATGT	1 cut(s)	903
PctI	GAATGC	1 cut(s)	543
PdmI	GAANNNNTTC	1 cut(s)	1446
PfeI	GAWTC	8 cut(s)	149, 241, 424, 1170, 1473, 1519, 1670, 1756
PfoI	TCCNGGA	2 cut(s)	1122, 1857
PkrI	GCNGC	3 cut(s)	1109, 1348, 1496
PleI	GAGTC	4 cut(s)	99, 173, 580, 1593
PpsI	GAGTC	4 cut(s)	99, 173, 580, 1593
PscI	ACATGT	1 cut(s)	903
PsiI	TTATAA	1 cut(s)	1532
Psp6I	CCWGG	4 cut(s)	1020, 1122, 1486, 1857
PspGI	CCWGG	4 cut(s)	1020, 1122, 1486, 1857
PspN4I	GGNNCC	1 cut(s)	1121
PstNI	CAGNNNCTG	3 cut(s)	108, 182, 1280
PsuI	RGATCY	3 cut(s)	509, 1645, 1834
PvuII	CAGCTG	1 cut(s)	1497
RsaI	GTAC	2 cut(s)	811, 1139
RsaNI	GTAC	2 cut(s)	810, 1138
RseI	CAYNNNNRTG	1 cut(s)	1686
SaqAI	TTAA	4 cut(s)	297, 558, 744, 1253
SatI	GCNGC	3 cut(s)	1108, 1347, 1495
SchI	GAGTC	4 cut(s)	99, 173, 581, 1593
ScrFI	CCNGG	4 cut(s)	1022, 1124, 1488, 1859
SduI	GDGCHC	2 cut(s)	986, 1122
SmiMI	CAYNNNNRTG	1 cut(s)	1686
Sse9I	AATT	6 cut(s)	95, 323, 1446, 1533, 1543, 1586
SseBI	AGGCCT	1 cut(s)	478
SsiI	CCGC	3 cut(s)	773, 1337, 1816
SspMI	CTAG	2 cut(s)	792, 1334
StuI	AGGCCT	1 cut(s)	478
StyD4I	CCNGG	4 cut(s)	1020, 1122, 1486, 1857
TaaI	ACNGT	3 cut(s)	354, 1436, 1688
TaiI	ACGT	3 cut(s)	50, 55, 788
TaqI	TCGA	9 cut(s)	277, 357, 651, 689, 1173, 1233, 1368, 1503, 1802
TasI	AATT	6 cut(s)	95, 323, 1446, 1533, 1543, 1586
TatI	WGTACW	1 cut(s)	809
TfiI	GAWTC	8 cut(s)	149, 241, 424, 1170, 1473, 1519, 1670, 1756
Tru1I	TTAA	4 cut(s)	297, 558, 744, 1253
Tru9I	TTAA	4 cut(s)	297, 558, 744, 1253
TscAI	CASTG	6 cut(s)	1035, 1185, 1248, 1441, 1609, 1693
TseFI	GTSAC	3 cut(s)	43, 1282, 1880
TseI	GCWGC	3 cut(s)	1107, 1346, 1494
Tsp45I	GTSAC	3 cut(s)	43, 1282, 1880
TspGWI	ACGGA	2 cut(s)	929, 1832
TspRI	CASTG	6 cut(s)	1035, 1185, 1248, 1441, 1609, 1693
XapI	RAATTY	3 cut(s)	95, 323, 1446
XceI	RCATGY	1 cut(s)	907
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1601
XmiI	GTMKAC	1 cut(s)	488
XmnI	GAANNNNTTC	1 cut(s)	1446
XspI	CTAG	2 cut(s)	792, 1334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.