Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004417

Physical Location & Seq

Genomic Coordinates Reverse (-)

19761961 .. 19766503

Gene Structure 4543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0139500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGAAACCCAACAAGAAGACAAACTATGTTGTTGCAAATCCATCTGTAGTTAGAGTTGGTAGGAACAATGTGGAATATGAGTTTGGTGGGGTAAAACCTAAAATCTTGCGATGCCGTCCAAAACTGTTTAAAGATGTCGTTTCAAGATTTTCAGATGAAAAAAAAGTTGCAGTAGAAGAAATGGGTTTTGGGCTGTTGTTGCAGCTCCAGTGTGAGCACCTGCAGCTTGGTTTGTGTGGTTGGTTGATTGATAGATTTGATCCCAGCAAGTCTTCCATTGAGGTACATGGCAAGAGATTCAATCTTGGTCCGACCGACTTTGAGAACATAATGGGGGTCAAAGATGGAGGACATGATGTTGAAATCCATGGCTCAAAGGCTGACATACAAGAATTAAAGGATATCCACTTTGGCAACAGATATCGAATATGCAATATGAGTGAAATAGCTGAGAAGTTGAAAGAGACGAATAATGTAGATGACACCTTTAGAGTTGGGTTTGTTCTATTTGCATTGGCCACCTTTCTTTGTCCATCTAGTTCAGGTGATTTGACAGCAAAGTATCTGCATCCAGTAAGGGACATCAATGGTATAAAATTCAAAAATTGGGCGACTTTTTCATTCAGTTTTCTTGTTGAAAGCCTCAGTACATTTAAGAAGAAAAATACAACTTCTATCGGTGGGTGTGTACTATTCTTGAAGCTGTTTTACTTTGATCTCGTTGTTCATGGAAGAACGTTTGTAAATAGATCATTGACGCCTATTGTTGCATGGGGGGAAAAGATGGAAACAAAGTTAGTGGAGTGGATCGGACAAAATGGGGGGTTTAATAATTTGGACATTGCTCTTGCTTATGATCGTATTGCCTCAATCCCAATCAGTGCTGATGAAGATGAGGTGGTGGCTGTGAGGAATGATCACACAGAGGTTGCAACAGTTGAACCACAGTCACAACAAAAGACAAATGACATTACTCTTGTTTACAAGCGTAGAGCCTCTGCTAGTTTTGACAACAGTGTGGTGGCCTTAAGGAATGATCTCGCAATGTTACACAAAAAGGTTACCAAATTTAAACGAGCACTACGGCAAAAGACAAATGATGATAAGGCAGCTGAACTGGAAGCTAAACTTGGTAGTGAGATGAGCAAGATTGAAGGCCTTACTTATTGGCAGGTCTTTCAAGCCACTAATATTTTAGCGACCAAATATGATCTGGTAACAATGTTTCTTCCCATGTCTGAGCAAAGCAAAAAGGCATTTGTTCTAAATCTGTTAGAGCATGGCACCCATGGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

432

Amino Acids

48.78

Weight (kDa)

8.79

Isoelectric Point (pI)

33.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38220 AT4G38220
fragaria_vesca	FvH4_2g16990
malus_domestica	MD05G1143000.v1.1 MD10G1142800.v1.1 MD15G1413100.v1.1
prunus_persica	Prupe.8G181800_v2.0.a1 Prupe.8G181800_v2.0.a1
pyrus_communis	pycom05g13750 pycom10g12270
rosa_chinensis	RchiOBHm_Chr2g0126171 RchiOBHm_Chr6g0281181
rosa_laevigata	RLG00000012987
rosa_multiflora	Rmu_co8196198.1_g000001 Rmu_co8363365.1_g000001 Rmu_sc0001705.1_g000022 Rmu_sc0012209.1_g000001 Rmu_sc0026953.1_g000001 Rmu_sc0034918.1_g000001 Rmu_sc0035650.1_g000001
rosa_rugosa	Rorug06G0139500 Rorug06G0139500
rosa_samantha	Rh2BG327100 Rh6AG251300 Rh6BG182200 Rh6BG254500 Rh6CG253900 Rh6DG246000
rosa_wichuraiana	Rw2G031780 Rw3G017710 Rw6G021830 Rw7G031480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	228
Acc36I	ACCTGC	2 cut(s)	228, 1162
AccB1I	GGYRCC	1 cut(s)	1283
AclI	AACGTT	1 cut(s)	737
AclWI	GGATC	2 cut(s)	254, 815
AcoI	YGGCCR	1 cut(s)	516
AcsI	RAATTY	2 cut(s)	596, 1067
AcyI	GRCGYC	1 cut(s)	758
AfaI	GTAC	3 cut(s)	285, 649, 690
AflII	CTTAAG	1 cut(s)	1027
AjuI	GAANNNNNNNTTGG	6 cut(s)	66, 98, 171, 203, 1113, 1145
AluBI	AGCT	6 cut(s)	205, 226, 449, 703, 1112, 1124
AluI	AGCT	6 cut(s)	205, 226, 449, 703, 1112, 1124
Alw21I	GWGCWC	2 cut(s)	219, 1081
Alw26I	GTCTC	1 cut(s)	458
AlwI	GGATC	2 cut(s)	254, 815
AoxI	GGCC	3 cut(s)	516, 1023, 1156
ApeKI	GCWGC	3 cut(s)	202, 223, 1109
ApoI	RAATTY	2 cut(s)	596, 1067
AspS9I	GGNCC	1 cut(s)	308
AsuHPI	GGTGA	1 cut(s)	557
AvaII	GGWCC	1 cut(s)	308
BalI	TGGCCA	1 cut(s)	518
BanI	GGYRCC	1 cut(s)	1283
BarI	GAAGNNNNNNTAC	2 cut(s)	692, 724
BbsI	GAAGAC	2 cut(s)	23, 264
Bbv12I	GWGCWC	2 cut(s)	219, 1081
BbvI	GCAGC	3 cut(s)	214, 235, 1121
BccI	CCATC	4 cut(s)	49, 338, 541, 778
BceAI	ACGGC	2 cut(s)	99, 1100
BclI	TGATCA	1 cut(s)	916
BcoDI	GTCTC	1 cut(s)	458
BfaI	CTAG	2 cut(s)	537, 1002
BfmI	CTRYAG	2 cut(s)	45, 221
BfrI	CTTAAG	1 cut(s)	1027
BfuAI	ACCTGC	2 cut(s)	228, 1162
BisI	GCNGC	3 cut(s)	203, 224, 1110
BlsI	GCNGC	3 cut(s)	204, 225, 1111
Bme18I	GGWCC	1 cut(s)	308
BmgT120I	GGNCC	1 cut(s)	308
BmiI	GGNNCC	1 cut(s)	1285
BmsI	GCATC	2 cut(s)	101, 577
BpiI	GAAGAC	2 cut(s)	23, 264
BpmI	CTGGAG	1 cut(s)	191
BsaHI	GRCGYC	1 cut(s)	758
BsaJI	CCNNGG	2 cut(s)	367, 1288
Bse1I	ACTGG	3 cut(s)	208, 572, 1122
Bse3DI	GCAATG	2 cut(s)	840, 1050
BseDI	CCNNGG	2 cut(s)	367, 1288
BseGI	GGATG	1 cut(s)	568
BseMI	GCAATG	2 cut(s)	840, 1050
BseMII	CTCAG	3 cut(s)	441, 658, 1230
BseNI	ACTGG	3 cut(s)	208, 572, 1122
BseXI	GCAGC	3 cut(s)	214, 235, 1121
BseYI	CCCAGC	1 cut(s)	263
Bsh1285I	CGRYCG	1 cut(s)	315
BshFI	GGCC	3 cut(s)	518, 1025, 1158
BshNI	GGYRCC	1 cut(s)	1283
BsiEI	CGRYCG	1 cut(s)	315
BsiHKAI	GWGCWC	2 cut(s)	219, 1081
BslFI	GGGAC	1 cut(s)	593
BsmAI	GTCTC	1 cut(s)	458
BsmBI	CGTCTC	1 cut(s)	458
BsmFI	GGGAC	1 cut(s)	593
BsnI	GGCC	3 cut(s)	518, 1025, 1158
Bsp1286I	GDGCHC	2 cut(s)	219, 1081
Bsp143I	GATC	8 cut(s)	259, 715, 749, 807, 856, 916, 1036, 1210
Bsp19I	CCATGG	2 cut(s)	367, 1288
BspANI	GGCC	3 cut(s)	518, 1025, 1158
BspCNI	CTCAG	3 cut(s)	442, 657, 1231
BspLI	GGNNCC	1 cut(s)	1285
BspMAI	CTGCAG	1 cut(s)	225
BspMI	ACCTGC	2 cut(s)	228, 1162
BspPI	GGATC	2 cut(s)	254, 815
BspT107I	GGYRCC	1 cut(s)	1283
BspTI	CTTAAG	1 cut(s)	1027
BsrDI	GCAATG	2 cut(s)	840, 1050
BsrI	ACTGG	3 cut(s)	208, 572, 1122
BssECI	CCNNGG	2 cut(s)	367, 1288
BssMI	GATC	8 cut(s)	259, 715, 749, 807, 856, 916, 1036, 1210
BssNI	GRCGYC	1 cut(s)	758
BssT1I	CCWWGG	2 cut(s)	367, 1288
Bst4CI	ACNGT	4 cut(s)	126, 937, 948, 1016
BstACI	GRCGYC	1 cut(s)	758
BstAFI	CTTAAG	1 cut(s)	1027
BstDEI	CTNAG	3 cut(s)	450, 644, 1239
BstDSI	CCRYGG	2 cut(s)	367, 1288
BstEII	GGTNACC	1 cut(s)	1060
BstF5I	GGATG	1 cut(s)	568
BstKTI	GATC	8 cut(s)	262, 718, 752, 810, 859, 919, 1039, 1213
BstMAI	GTCTC	1 cut(s)	458
BstMBI	GATC	8 cut(s)	259, 715, 749, 807, 856, 916, 1036, 1210
BstMCI	CGRYCG	1 cut(s)	315
BstMWI	GCNNNNNNNGC	3 cut(s)	199, 223, 1290
BstPI	GGTNACC	1 cut(s)	1060
BstSFI	CTRYAG	2 cut(s)	45, 221
BstV1I	GCAGC	3 cut(s)	214, 235, 1121
BstV2I	GAAGAC	2 cut(s)	23, 264
BsuRI	GGCC	3 cut(s)	518, 1025, 1158
BtgI	CCRYGG	2 cut(s)	367, 1288
BtgZI	GCGATG	1 cut(s)	124
BtsCI	GGATG	1 cut(s)	568
BtsIMutI	CAGTG	3 cut(s)	215, 886, 1021
BveI	ACCTGC	2 cut(s)	228, 1162
Cfr13I	GGNCC	1 cut(s)	308
CseI	GACGC	1 cut(s)	766
Csp6I	GTAC	3 cut(s)	284, 648, 689
CspCI	CAANNNNNGTGG	2 cut(s)	780, 815
CviAII	CATG	8 cut(s)	287, 353, 368, 728, 771, 1234, 1280, 1289
CviQI	GTAC	3 cut(s)	284, 648, 689
DdeI	CTNAG	3 cut(s)	450, 644, 1239
DpnI	GATC	8 cut(s)	261, 717, 751, 809, 858, 918, 1038, 1212
DpnII	GATC	8 cut(s)	259, 715, 749, 807, 856, 916, 1036, 1210
DraI	TTTAAA	2 cut(s)	130, 1072
EaeI	YGGCCR	1 cut(s)	516
Eco130I	CCWWGG	2 cut(s)	367, 1288
Eco147I	AGGCCT	1 cut(s)	1158
Eco32I	GATATC	2 cut(s)	403, 422
Eco47I	GGWCC	1 cut(s)	308
Eco91I	GGTNACC	1 cut(s)	1060
EcoO65I	GGTNACC	1 cut(s)	1060
EcoRV	GATATC	2 cut(s)	403, 422
EcoT14I	CCWWGG	2 cut(s)	367, 1288
ErhI	CCWWGG	2 cut(s)	367, 1288
Esp3I	CGTCTC	1 cut(s)	458
FaeI	CATG	8 cut(s)	290, 356, 371, 731, 774, 1237, 1283, 1292
FalI	AAGNNNNNCTT	2 cut(s)	1113, 1145
FaqI	GGGAC	1 cut(s)	593
FatI	CATG	8 cut(s)	286, 352, 367, 727, 770, 1233, 1279, 1288
FbaI	TGATCA	1 cut(s)	916
Fnu4HI	GCNGC	3 cut(s)	203, 224, 1110
FokI	GGATG	1 cut(s)	555
Fsp4HI	GCNGC	3 cut(s)	203, 224, 1110
FspBI	CTAG	2 cut(s)	537, 1002
GluI	GCNGC	3 cut(s)	203, 224, 1110
GsaI	CCCAGC	1 cut(s)	267
GsuI	CTGGAG	1 cut(s)	191
HaeIII	GGCC	3 cut(s)	518, 1025, 1158
HgaI	GACGC	1 cut(s)	766
Hin1I	GRCGYC	1 cut(s)	758
Hin1II	CATG	8 cut(s)	290, 356, 371, 731, 774, 1237, 1283, 1292
HinfI	GANTC	1 cut(s)	297
HphI	GGTGA	1 cut(s)	557
Hpy166II	GTNNAC	2 cut(s)	689, 982
Hpy188I	TCNGA	4 cut(s)	154, 312, 812, 1240
Hpy188III	TCNNGA	2 cut(s)	144, 697
Hpy8I	GTNNAC	2 cut(s)	689, 982
HpyAV	CCTTC	1 cut(s)	1148
HpyCH4III	ACNGT	4 cut(s)	126, 937, 948, 1016
HpyCH4IV	ACGT	1 cut(s)	737
HpyCH4V	TGCA	9 cut(s)	35, 170, 202, 223, 432, 512, 568, 770, 932
HpyF10VI	GCNNNNNNNGC	3 cut(s)	199, 223, 1290
HpyF3I	CTNAG	3 cut(s)	450, 644, 1239
HpySE526I	ACGT	1 cut(s)	737
Hsp92I	GRCGYC	1 cut(s)	758
Hsp92II	CATG	8 cut(s)	290, 356, 371, 731, 774, 1237, 1283, 1292
Ksp22I	TGATCA	1 cut(s)	916
Kzo9I	GATC	8 cut(s)	259, 715, 749, 807, 856, 916, 1036, 1210
LmnI	GCTCC	1 cut(s)	210
LpnPI	CCDG	8 cut(s)	221, 233, 277, 528, 585, 1103, 1157, 1199
Lsp1109I	GCAGC	3 cut(s)	214, 235, 1121
LweI	GCATC	2 cut(s)	101, 577
MaeI	CTAG	2 cut(s)	537, 1002
MaeII	ACGT	1 cut(s)	737
MaeIII	GTNAC	4 cut(s)	948, 1047, 1060, 1216
MalI	GATC	8 cut(s)	261, 717, 751, 809, 858, 918, 1038, 1212
MboI	GATC	8 cut(s)	259, 715, 749, 807, 856, 916, 1036, 1210
MboII	GAAGA	7 cut(s)	28, 188, 264, 670, 744, 902, 1220
MhlI	GDGCHC	2 cut(s)	219, 1081
MlsI	TGGCCA	1 cut(s)	518
MluCI	AATT	5 cut(s)	392, 596, 604, 832, 1067
MluNI	TGGCCA	1 cut(s)	518
MmeI	TCCRAC	1 cut(s)	335
MnlI	CCTC	8 cut(s)	274, 341, 653, 877, 889, 903, 919, 1006
Mox20I	TGGCCA	1 cut(s)	518
MscI	TGGCCA	1 cut(s)	518
MseI	TTAA	6 cut(s)	129, 395, 654, 828, 1028, 1071
Msp20I	TGGCCA	1 cut(s)	518
MspA1I	CMGCKG	1 cut(s)	1112
MspCI	CTTAAG	1 cut(s)	1027
MwoI	GCNNNNNNNGC	3 cut(s)	199, 223, 1290
NcoI	CCATGG	2 cut(s)	367, 1288
NdeII	GATC	8 cut(s)	259, 715, 749, 807, 856, 916, 1036, 1210
NlaIII	CATG	8 cut(s)	290, 356, 371, 731, 774, 1237, 1283, 1292
NlaIV	GGNNCC	1 cut(s)	1285
NmuCI	GTSAC	1 cut(s)	948
PaqCI	CACCTGC	1 cut(s)	228
PceI	AGGCCT	1 cut(s)	1158
PfeI	GAWTC	1 cut(s)	297
PkrI	GCNGC	3 cut(s)	204, 225, 1111
Psp1406I	AACGTT	1 cut(s)	737
PspEI	GGTNACC	1 cut(s)	1060
PspFI	CCCAGC	1 cut(s)	263
PspN4I	GGNNCC	1 cut(s)	1285
PspPI	GGNCC	1 cut(s)	308
PstI	CTGCAG	1 cut(s)	225
PvuII	CAGCTG	1 cut(s)	1112
RsaI	GTAC	3 cut(s)	285, 649, 690
RsaNI	GTAC	3 cut(s)	284, 648, 689
SaqAI	TTAA	6 cut(s)	129, 395, 654, 828, 1028, 1071
SatI	GCNGC	3 cut(s)	203, 224, 1110
Sau3AI	GATC	8 cut(s)	259, 715, 749, 807, 856, 916, 1036, 1210
Sau96I	GGNCC	1 cut(s)	308
SduI	GDGCHC	2 cut(s)	219, 1081
SfaNI	GCATC	2 cut(s)	101, 577
SfcI	CTRYAG	2 cut(s)	45, 221
SinI	GGWCC	1 cut(s)	308
SmlI	CTYRAG	1 cut(s)	1027
SmoI	CTYRAG	1 cut(s)	1027
Sse9I	AATT	5 cut(s)	392, 596, 604, 832, 1067
SseBI	AGGCCT	1 cut(s)	1158
SspI	AATATT	1 cut(s)	1192
SspMI	CTAG	2 cut(s)	537, 1002
StuI	AGGCCT	1 cut(s)	1158
StyI	CCWWGG	2 cut(s)	367, 1288
TaaI	ACNGT	4 cut(s)	126, 937, 948, 1016
TaiI	ACGT	1 cut(s)	740
TaqI	TCGA	1 cut(s)	424
TaqII	GACCGA	1 cut(s)	329
TasI	AATT	5 cut(s)	392, 596, 604, 832, 1067
TatI	WGTACW	2 cut(s)	647, 688
TfiI	GAWTC	1 cut(s)	297
Tru1I	TTAA	6 cut(s)	129, 395, 654, 828, 1028, 1071
Tru9I	TTAA	6 cut(s)	129, 395, 654, 828, 1028, 1071
TscAI	CASTG	3 cut(s)	215, 886, 1021
TseFI	GTSAC	1 cut(s)	948
TseI	GCWGC	3 cut(s)	202, 223, 1109
Tsp45I	GTSAC	1 cut(s)	948
TspDTI	ATGAA	5 cut(s)	17, 171, 609, 716, 903
TspRI	CASTG	3 cut(s)	215, 886, 1021
Vha464I	CTTAAG	1 cut(s)	1027
VpaK11BI	GGWCC	1 cut(s)	308
XapI	RAATTY	2 cut(s)	596, 1067
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1210
XspI	CTAG	2 cut(s)	537, 1002

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.