Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004417

Physical Location & Seq

Genomic Coordinates Reverse (-)

32825289 .. 32825877

Gene Structure 589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG182200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGAAGTGCGTCGGGCTTCAGTACCTGGAGGCCATTCGACGGCTTAAGGCTTCTGGGTTTAAGCCCACTCGGACTGTTTACTTGTCTTTCGTTCCTGATGAGGAGATTGGTGGTCATGATGGCGCTGAGAAGTTTACTGAATCTGATATTTTCAAAGCCTTGAACGTTGGGATAGTTCTCAATAAAGGGTTGGCCTCGCCGAGTGAGCATTATAGGGCTTTCTATGCGGAGAAGTGCCCGTGGTGGCTGATCATCAAGGCTACTGGGGCTCCTGGTCATAGGGCTAAGCTGTATGACAACACTGCCATGGAGAATATATTGAAGAGCATTGAGAGTGTGAGGAGATTTCGTGCTTCGCAGTTTGATTTGATGAAGGCGGGTTTGAAGGCTGAAGGGGAGGTCGTCTCTGTCAATATGGCATTTTTGAAGGCTGGCACACCCTCTCCGACT

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004046 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0016787 GO:0016810 GO:0016811 GO:0031982 GO:0042802 GO:0043226 GO:0043227 GO:0043230 GO:0044421 GO:0070062 GO:1903561

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

M20_dimer Peptidase_M20

Protein Analysis

150

Amino Acids

16.61

Weight (kDa)

9.25

Isoelectric Point (pI)

45.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M20	PF01546	1 - 56	1.9e-09	Peptidase family M20/M25/M40

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38220 AT4G38220
fragaria_vesca	FvH4_2g16990
malus_domestica	MD05G1143000.v1.1 MD10G1142800.v1.1 MD15G1413100.v1.1
prunus_persica	Prupe.8G181800_v2.0.a1 Prupe.8G181800_v2.0.a1
pyrus_communis	pycom05g13750 pycom10g12270
rosa_chinensis	RchiOBHm_Chr2g0126171 RchiOBHm_Chr6g0281181
rosa_laevigata	RLG00000012987
rosa_multiflora	Rmu_co8196198.1_g000001 Rmu_co8363365.1_g000001 Rmu_sc0001705.1_g000022 Rmu_sc0012209.1_g000001 Rmu_sc0026953.1_g000001 Rmu_sc0034918.1_g000001 Rmu_sc0035650.1_g000001
rosa_rugosa	Rorug06G0139500 Rorug06G0139500
rosa_samantha	Rh2BG327100 Rh6AG251300 Rh6BG182200 Rh6BG254500 Rh6CG253900 Rh6DG246000
rosa_wichuraiana	Rw2G031780 Rw3G017710 Rw6G021830 Rw7G031480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	227, 377
AclI	AACGTT	1 cut(s)	165
AcuI	CTGAAG	1 cut(s)	411
AfaI	GTAC	1 cut(s)	23
AfiI	CCNNNNNNNGG	1 cut(s)	39
AflII	CTTAAG	1 cut(s)	44
AgsI	TTSAA	5 cut(s)	154, 163, 322, 385, 427
AjnI	CCWGG	2 cut(s)	24, 271
AluBI	AGCT	1 cut(s)	289
AluI	AGCT	1 cut(s)	289
Alw26I	GTCTC	1 cut(s)	409
AlwNI	CAGNNNCTG	1 cut(s)	25
AoxI	GGCC	2 cut(s)	30, 192
AspLEI	GCGC	1 cut(s)	125
BaeGI	GKGCMC	1 cut(s)	239
BanII	GRGCYC	1 cut(s)	271
BccI	CCATC	1 cut(s)	113
BceAI	ACGGC	1 cut(s)	56
BciT130I	CCWGG	2 cut(s)	26, 273
BclI	TGATCA	1 cut(s)	249
BcoDI	GTCTC	1 cut(s)	409
BfoI	RGCGCY	1 cut(s)	126
BfrI	CTTAAG	1 cut(s)	44
BlpI	GCTNAGC	1 cut(s)	285
Bme1390I	CCNGG	2 cut(s)	26, 273
BmiI	GGNNCC	1 cut(s)	270
BmrFI	CCNGG	2 cut(s)	26, 273
BmrI	ACTGGG	1 cut(s)	273
BmuI	ACTGGG	1 cut(s)	273
BplI	GAGNNNNNCTC	2 cut(s)	389, 421
BpmI	CTGGAG	1 cut(s)	47
Bpu1102I	GCTNAGC	1 cut(s)	285
BsaJI	CCNNGG	2 cut(s)	239, 306
BsaXI	ACNNNNNCTCC	5 cut(s)	253, 283, 334, 364, 427
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
Bse1I	ACTGG	1 cut(s)	268
BseBI	CCWGG	2 cut(s)	26, 273
BseDI	CCNNGG	2 cut(s)	239, 306
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	1 cut(s)	268
BseRI	GAGGAG	2 cut(s)	116, 355
BseSI	GKGCMC	1 cut(s)	239
BshFI	GGCC	2 cut(s)	32, 194
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmAI	GTCTC	1 cut(s)	409
BsmBI	CGTCTC	1 cut(s)	409
BsnI	GGCC	2 cut(s)	32, 194
Bsp1286I	GDGCHC	2 cut(s)	239, 271
Bsp143I	GATC	1 cut(s)	249
Bsp1720I	GCTNAGC	1 cut(s)	285
Bsp19I	CCATGG	1 cut(s)	306
BspACI	CCGC	2 cut(s)	227, 377
BspANI	GGCC	2 cut(s)	32, 194
BspCNI	CTCAG	1 cut(s)	118
BspHI	TCATGA	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	270
BspQI	GCTCTTC	1 cut(s)	317
BspTI	CTTAAG	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	268
BssECI	CCNNGG	2 cut(s)	239, 306
BssMI	GATC	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	306
Bst2UI	CCWGG	2 cut(s)	26, 273
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	1 cut(s)	317
BstAFI	CTTAAG	1 cut(s)	44
BstC8I	GCNNGC	1 cut(s)	433
BstDEI	CTNAG	2 cut(s)	126, 285
BstDSI	CCRYGG	2 cut(s)	239, 306
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	1 cut(s)	252
BstMAI	GTCTC	1 cut(s)	409
BstMBI	GATC	1 cut(s)	249
BstMWI	GCNNNNNNNGC	3 cut(s)	205, 224, 266
BstNI	CCWGG	2 cut(s)	26, 273
BstSCI	CCNGG	2 cut(s)	24, 271
BstSLI	GKGCMC	1 cut(s)	239
BsuRI	GGCC	2 cut(s)	32, 194
BtgI	CCRYGG	2 cut(s)	239, 306
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	1 cut(s)	300
Cac8I	GCNNGC	1 cut(s)	433
CaiI	CAGNNNCTG	1 cut(s)	25
CciI	TCATGA	1 cut(s)	115
CfoI	GCGC	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	22
CviAII	CATG	2 cut(s)	116, 307
CviQI	GTAC	1 cut(s)	22
DdeI	CTNAG	2 cut(s)	126, 285
DpnI	GATC	1 cut(s)	251
DpnII	GATC	1 cut(s)	249
Eam1104I	CTCTTC	1 cut(s)	317
EarI	CTCTTC	1 cut(s)	317
Eco130I	CCWWGG	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	271
Eco57I	CTGAAG	1 cut(s)	411
EcoRII	CCWGG	2 cut(s)	24, 271
EcoT14I	CCWWGG	1 cut(s)	306
EcoT38I	GRGCYC	1 cut(s)	271
ErhI	CCWWGG	1 cut(s)	306
Esp3I	CGTCTC	1 cut(s)	409
FaeI	CATG	2 cut(s)	119, 310
FaiI	YATR	8 cut(s)	117, 213, 225, 279, 294, 308, 317, 416
FatI	CATG	2 cut(s)	115, 306
FauI	CCCGC	1 cut(s)	370
FbaI	TGATCA	1 cut(s)	249
FriOI	GRGCYC	1 cut(s)	271
GlaI	GCGC	1 cut(s)	124
GsuI	CTGGAG	1 cut(s)	47
HaeII	RGCGCY	1 cut(s)	126
HaeIII	GGCC	2 cut(s)	32, 194
HhaI	GCGC	1 cut(s)	125
Hin1II	CATG	2 cut(s)	119, 310
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HinfI	GANTC	1 cut(s)	140
Hpy166II	GTNNAC	2 cut(s)	79, 135
Hpy188I	TCNGA	3 cut(s)	72, 145, 447
Hpy188III	TCNNGA	2 cut(s)	95, 116
Hpy8I	GTNNAC	2 cut(s)	79, 135
Hpy99I	CGWCG	2 cut(s)	14, 42
HpyAV	CCTTC	4 cut(s)	367, 379, 386, 421
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4IV	ACGT	1 cut(s)	165
HpyF10VI	GCNNNNNNNGC	3 cut(s)	205, 224, 266
HpyF3I	CTNAG	2 cut(s)	126, 285
HpySE526I	ACGT	1 cut(s)	165
Hsp92II	CATG	2 cut(s)	119, 310
HspAI	GCGC	1 cut(s)	123
Ksp22I	TGATCA	1 cut(s)	249
Kzo9I	GATC	1 cut(s)	249
LguI	GCTCTTC	1 cut(s)	317
LmnI	GCTCC	1 cut(s)	274
LpnPI	CCDG	8 cut(s)	11, 38, 39, 108, 249, 258, 285, 417
MaeII	ACGT	1 cut(s)	165
MalI	GATC	1 cut(s)	251
MboI	GATC	1 cut(s)	249
MboII	GAAGA	1 cut(s)	334
MhlI	GDGCHC	2 cut(s)	239, 271
MnlI	CCTC	5 cut(s)	22, 94, 205, 333, 391
MseI	TTAA	2 cut(s)	45, 60
MslI	CAYNNNNRTG	1 cut(s)	305
MspCI	CTTAAG	1 cut(s)	44
MspR9I	CCNGG	2 cut(s)	26, 273
MvaI	CCWGG	2 cut(s)	26, 273
MwoI	GCNNNNNNNGC	3 cut(s)	205, 224, 266
NcoI	CCATGG	1 cut(s)	306
NdeII	GATC	1 cut(s)	249
NlaIII	CATG	2 cut(s)	119, 310
NlaIV	GGNNCC	1 cut(s)	270
NmeAIII	GCCGAG	1 cut(s)	225
PagI	TCATGA	1 cut(s)	115
PciSI	GCTCTTC	1 cut(s)	317
PfeI	GAWTC	1 cut(s)	140
Psp1406I	AACGTT	1 cut(s)	165
Psp6I	CCWGG	2 cut(s)	24, 271
PspGI	CCWGG	2 cut(s)	24, 271
PspN4I	GGNNCC	1 cut(s)	270
PstNI	CAGNNNCTG	1 cut(s)	25
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
RseI	CAYNNNNRTG	1 cut(s)	305
SapI	GCTCTTC	1 cut(s)	317
SaqAI	TTAA	2 cut(s)	45, 60
Sau3AI	GATC	1 cut(s)	249
ScrFI	CCNGG	2 cut(s)	26, 273
SduI	GDGCHC	2 cut(s)	239, 271
SetI	ASST	4 cut(s)	27, 168, 291, 402
SmiMI	CAYNNNNRTG	1 cut(s)	305
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
SsiI	CCGC	2 cut(s)	227, 377
StyD4I	CCNGG	2 cut(s)	24, 271
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	1 cut(s)	76
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	1 cut(s)	37
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	2 cut(s)	45, 60
Tru9I	TTAA	2 cut(s)	45, 60
TscAI	CASTG	1 cut(s)	307
TspDTI	ATGAA	2 cut(s)	17, 386
TspRI	CASTG	1 cut(s)	307
Vha464I	CTTAAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.