Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004417

Physical Location & Seq

Genomic Coordinates Forward (+)

40330919 .. 40332271

Gene Structure 1353 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49818

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCCGTGGTAGAATATCGCCGACCGAGGAGACAGAGTGCCCCAGATCCACTTTCTCTCTCCTCCATCAAATGGCCCGACTCCGACCCGACTCTCTCCTCCATCCTCCTCAACTCCTACACCGACGTCGTCCTGGCCGAGCACAGAAAGTGGCCCCACCATCCTTTCTCGGCCCTCGTCGACCCGAGTGGGAAAATCTACGCCAGAGGCTCCCAGGACATGAAGTGCAACGGGCTTCAGTACCTAGAGGCCATTCGACGGCTTAAGGCTTCTGGGTTTAAGCAGACTCGGACTGTTTACTTGTCTTTCGTTCCTGATGAGGAGATTGGTGGTCATGATGGCGCTGAGAAGTTTGCTGAATCTGATATTTTCAAAGCCTTGAACGTTGGGATAGTTCTCGATGAAGGGTTGGCCTCGCCGAGCGAGCATTATAGGGCTTTCTATGCGGAGAGGTGCCCATGGTGGCTGATCATCAAGGCTACTGGGGCTCCTGGTCATGGGGCTAAGCTGTATGACAACACTGCCATGGAGAATATATTGAAGAGCATTGAGAGTGTGAGGAGATTTCGTGCTTCACAGTTTGATTTGGTGAAGGCGGGTTTGAAGGCTGAAGGGGAGGTCGTCTCTGTCAATATGGCATTTTTGAAGGCTGGCACACCCTGTCCGACTGGTTCAATTGGGCTTCTGTTCAGTTCAAATCGTTTGAGATTTCTGGTGTTGTTGCTAGGCAGCTTCTTGATTGTTAGATTTGTTTTTTTTTTTTTTGCTCAGTTCATATTGCTCAGTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004046 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0016787 GO:0016810 GO:0016811 GO:0031982 GO:0042802 GO:0043226 GO:0043227 GO:0043230 GO:0044421 GO:0070062 GO:1903561

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

M20_dimer Peptidase_M20

Protein Analysis

263

Amino Acids

29.37

Weight (kDa)

9.08

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M20	PF01546	37 - 131	3.1e-19	Peptidase family M20/M25/M40

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38220 AT4G38220
fragaria_vesca	FvH4_2g16990
malus_domestica	MD05G1143000.v1.1 MD10G1142800.v1.1 MD15G1413100.v1.1
prunus_persica	Prupe.8G181800_v2.0.a1 Prupe.8G181800_v2.0.a1
pyrus_communis	pycom05g13750 pycom10g12270
rosa_chinensis	RchiOBHm_Chr2g0126171 RchiOBHm_Chr6g0281181
rosa_laevigata	RLG00000012987
rosa_multiflora	Rmu_co8196198.1_g000001 Rmu_co8363365.1_g000001 Rmu_sc0001705.1_g000022 Rmu_sc0012209.1_g000001 Rmu_sc0026953.1_g000001 Rmu_sc0034918.1_g000001 Rmu_sc0035650.1_g000001
rosa_rugosa	Rorug06G0139500 Rorug06G0139500
rosa_samantha	Rh2BG327100 Rh6AG251300 Rh6BG182200 Rh6BG254500 Rh6CG253900 Rh6DG246000
rosa_wichuraiana	Rw2G031780 Rw3G017710 Rw6G021830 Rw7G031480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	129
AccB1I	GGYRCC	1 cut(s)	453
AccB7I	CCANNNNNTGG	1 cut(s)	72
AccI	GTMKAC	1 cut(s)	180
AciI	CCGC	2 cut(s)	446, 596
AclI	AACGTT	1 cut(s)	384
AclWI	GGATC	1 cut(s)	41
AcoI	YGGCCR	2 cut(s)	3, 135
AcuI	CTGAAG	2 cut(s)	221, 630
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	3 cut(s)	72, 258, 497
AflII	CTTAAG	1 cut(s)	263
AgsI	TTSAA	7 cut(s)	373, 382, 541, 604, 646, 675, 696
AjnI	CCWGG	3 cut(s)	132, 213, 490
AluBI	AGCT	2 cut(s)	508, 732
AluI	AGCT	2 cut(s)	508, 732
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	2 cut(s)	25, 628
AlwI	GGATC	1 cut(s)	41
Ama87I	CYCGRG	1 cut(s)	184
AoxI	GGCC	7 cut(s)	3, 74, 135, 152, 171, 249, 411
ApeKI	GCWGC	1 cut(s)	729
AspLEI	GCGC	1 cut(s)	344
AspS9I	GGNCC	3 cut(s)	75, 153, 172
AsuHPI	GGTGA	1 cut(s)	601
AvaI	CYCGRG	1 cut(s)	184
BaeGI	GKGCMC	2 cut(s)	43, 458
BanI	GGYRCC	1 cut(s)	453
BanII	GRGCYC	1 cut(s)	490
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	741
BccI	CCATC	4 cut(s)	74, 110, 168, 332
BceAI	ACGGC	1 cut(s)	275
BciT130I	CCWGG	3 cut(s)	134, 215, 492
BclI	TGATCA	1 cut(s)	468
BcoDI	GTCTC	2 cut(s)	25, 628
BfaI	CTAG	2 cut(s)	245, 725
BfoI	RGCGCY	1 cut(s)	345
BfrI	CTTAAG	1 cut(s)	263
BisI	GCNGC	1 cut(s)	730
BlpI	GCTNAGC	1 cut(s)	504
BlsI	GCNGC	1 cut(s)	731
Bme1390I	CCNGG	3 cut(s)	134, 215, 492
BmeT110I	CYCGRG	1 cut(s)	184
BmgT120I	GGNCC	3 cut(s)	75, 153, 172
BmiI	GGNNCC	4 cut(s)	155, 211, 455, 489
BmrFI	CCNGG	3 cut(s)	134, 215, 492
BmrI	ACTGGG	1 cut(s)	492
BmuI	ACTGGG	1 cut(s)	492
BplI	GAGNNNNNCTC	2 cut(s)	608, 640
Bpu1102I	GCTNAGC	1 cut(s)	504
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	5 cut(s)	6, 26, 213, 458, 525
BsaXI	ACNNNNNCTCC	6 cut(s)	22, 52, 472, 502, 553, 583
Bsc4I	CCNNNNNNNGG	3 cut(s)	72, 258, 497
Bse1I	ACTGG	2 cut(s)	487, 673
BseBI	CCWGG	3 cut(s)	134, 215, 492
BseDI	CCNNGG	5 cut(s)	6, 26, 213, 458, 525
BseGI	GGATG	2 cut(s)	102, 160
BseLI	CCNNNNNNNGG	3 cut(s)	72, 258, 497
BseMII	CTCAG	2 cut(s)	336, 782
BseNI	ACTGG	2 cut(s)	487, 673
BseRI	GAGGAG	6 cut(s)	43, 52, 88, 98, 335, 574
BseSI	GKGCMC	2 cut(s)	43, 458
BseXI	GCAGC	1 cut(s)	741
Bsh1285I	CGRYCG	1 cut(s)	26
BshFI	GGCC	7 cut(s)	5, 76, 137, 154, 173, 251, 413
BshNI	GGYRCC	1 cut(s)	453
BsiEI	CGRYCG	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	144
BsiHKCI	CYCGRG	1 cut(s)	184
BslI	CCNNNNNNNGG	3 cut(s)	72, 258, 497
BsmAI	GTCTC	2 cut(s)	25, 628
BsmBI	CGTCTC	1 cut(s)	628
BsnI	GGCC	7 cut(s)	5, 76, 137, 154, 173, 251, 413
BsoBI	CYCGRG	1 cut(s)	184
Bsp1286I	GDGCHC	4 cut(s)	43, 144, 458, 490
Bsp143I	GATC	2 cut(s)	46, 468
Bsp1720I	GCTNAGC	1 cut(s)	504
Bsp19I	CCATGG	2 cut(s)	458, 525
BspACI	CCGC	2 cut(s)	446, 596
BspANI	GGCC	7 cut(s)	5, 76, 137, 154, 173, 251, 413
BspCNI	CTCAG	2 cut(s)	337, 781
BspHI	TCATGA	1 cut(s)	334
BspLI	GGNNCC	4 cut(s)	155, 211, 455, 489
BspPI	GGATC	1 cut(s)	41
BspQI	GCTCTTC	1 cut(s)	536
BspT107I	GGYRCC	1 cut(s)	453
BspTI	CTTAAG	1 cut(s)	263
BsrI	ACTGG	2 cut(s)	487, 673
BssECI	CCNNGG	5 cut(s)	6, 26, 213, 458, 525
BssMI	GATC	2 cut(s)	46, 468
BssNI	GRCGYC	1 cut(s)	126
BssT1I	CCWWGG	2 cut(s)	458, 525
Bst2UI	CCWGG	3 cut(s)	134, 215, 492
Bst4CI	ACNGT	2 cut(s)	295, 579
Bst6I	CTCTTC	1 cut(s)	536
BstACI	GRCGYC	1 cut(s)	126
BstAFI	CTTAAG	1 cut(s)	263
BstC8I	GCNNGC	2 cut(s)	425, 652
BstDEI	CTNAG	4 cut(s)	345, 504, 768, 782
BstDSI	CCRYGG	3 cut(s)	6, 458, 525
BstF5I	GGATG	2 cut(s)	102, 160
BstH2I	RGCGCY	1 cut(s)	345
BstHHI	GCGC	1 cut(s)	344
BstKTI	GATC	2 cut(s)	49, 471
BstMAI	GTCTC	2 cut(s)	25, 628
BstMBI	GATC	2 cut(s)	46, 468
BstMCI	CGRYCG	1 cut(s)	26
BstMWI	GCNNNNNNNGC	3 cut(s)	424, 443, 485
BstNI	CCWGG	3 cut(s)	134, 215, 492
BstSCI	CCNGG	3 cut(s)	132, 213, 490
BstSLI	GKGCMC	2 cut(s)	43, 458
BstV1I	GCAGC	1 cut(s)	741
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BsuRI	GGCC	7 cut(s)	5, 76, 137, 154, 173, 251, 413
BtgI	CCRYGG	3 cut(s)	6, 458, 525
BtsCI	GGATG	2 cut(s)	102, 160
BtsI	GCAGTG	1 cut(s)	519
BtsIMutI	CAGTG	1 cut(s)	519
Cac8I	GCNNGC	2 cut(s)	425, 652
CciI	TCATGA	1 cut(s)	334
CfoI	GCGC	1 cut(s)	344
Cfr13I	GGNCC	3 cut(s)	75, 153, 172
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	5 cut(s)	220, 335, 459, 497, 526
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	4 cut(s)	345, 504, 768, 782
DpnI	GATC	2 cut(s)	48, 470
DpnII	GATC	2 cut(s)	46, 468
EaeI	YGGCCR	2 cut(s)	3, 135
Eam1104I	CTCTTC	1 cut(s)	536
EarI	CTCTTC	1 cut(s)	536
Eco130I	CCWWGG	2 cut(s)	458, 525
Eco24I	GRGCYC	1 cut(s)	490
Eco57I	CTGAAG	2 cut(s)	221, 630
Eco88I	CYCGRG	1 cut(s)	184
EcoRII	CCWGG	3 cut(s)	132, 213, 490
EcoT14I	CCWWGG	2 cut(s)	458, 525
EcoT38I	GRGCYC	1 cut(s)	490
ErhI	CCWWGG	2 cut(s)	458, 525
Esp3I	CGTCTC	1 cut(s)	628
FaeI	CATG	5 cut(s)	223, 338, 462, 500, 529
FatI	CATG	5 cut(s)	219, 334, 458, 496, 525
FauI	CCCGC	1 cut(s)	589
FbaI	TGATCA	1 cut(s)	468
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	1 cut(s)	730
FokI	GGATG	2 cut(s)	89, 147
FriOI	GRGCYC	1 cut(s)	490
Fsp4HI	GCNGC	1 cut(s)	730
FspBI	CTAG	2 cut(s)	245, 725
GlaI	GCGC	1 cut(s)	343
GluI	GCNGC	1 cut(s)	730
HaeII	RGCGCY	1 cut(s)	345
HaeIII	GGCC	7 cut(s)	5, 76, 137, 154, 173, 251, 413
HhaI	GCGC	1 cut(s)	344
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	5 cut(s)	223, 338, 462, 500, 529
Hin6I	GCGC	1 cut(s)	342
HinP1I	GCGC	1 cut(s)	342
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	4 cut(s)	80, 91, 286, 359
HphI	GGTGA	1 cut(s)	601
Hpy166II	GTNNAC	2 cut(s)	181, 298
Hpy188I	TCNGA	4 cut(s)	85, 291, 364, 666
Hpy188III	TCNNGA	4 cut(s)	314, 335, 398, 736
Hpy8I	GTNNAC	2 cut(s)	181, 298
Hpy99I	CGWCG	4 cut(s)	128, 131, 182, 261
HpyAV	CCTTC	5 cut(s)	398, 586, 598, 605, 640
HpyCH4III	ACNGT	2 cut(s)	295, 579
HpyCH4IV	ACGT	2 cut(s)	126, 384
HpyCH4V	TGCA	1 cut(s)	228
HpyF10VI	GCNNNNNNNGC	3 cut(s)	424, 443, 485
HpyF3I	CTNAG	4 cut(s)	345, 504, 768, 782
HpySE526I	ACGT	2 cut(s)	126, 384
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	5 cut(s)	223, 338, 462, 500, 529
HspAI	GCGC	1 cut(s)	342
Ksp22I	TGATCA	1 cut(s)	468
Kzo9I	GATC	2 cut(s)	46, 468
LguI	GCTCTTC	1 cut(s)	536
LmnI	GCTCC	2 cut(s)	215, 493
Lsp1109I	GCAGC	1 cut(s)	741
MaeI	CTAG	2 cut(s)	245, 725
MaeII	ACGT	2 cut(s)	126, 384
MaeIII	GTNAC	1 cut(s)	785
MalI	GATC	2 cut(s)	48, 470
MboI	GATC	2 cut(s)	46, 468
MboII	GAAGA	1 cut(s)	553
MfeI	CAATTG	1 cut(s)	675
MflI	RGATCY	1 cut(s)	46
MhlI	GDGCHC	4 cut(s)	43, 144, 458, 490
MluCI	AATT	1 cut(s)	675
MlyI	GAGTC	3 cut(s)	74, 85, 280
MmeI	TCCRAC	2 cut(s)	108, 689
MseI	TTAA	2 cut(s)	264, 279
MslI	CAYNNNNRTG	1 cut(s)	524
MspCI	CTTAAG	1 cut(s)	263
MspR9I	CCNGG	3 cut(s)	134, 215, 492
MunI	CAATTG	1 cut(s)	675
MvaI	CCWGG	3 cut(s)	134, 215, 492
MwoI	GCNNNNNNNGC	3 cut(s)	424, 443, 485
NcoI	CCATGG	2 cut(s)	458, 525
NdeII	GATC	2 cut(s)	46, 468
NlaIII	CATG	5 cut(s)	223, 338, 462, 500, 529
NlaIV	GGNNCC	4 cut(s)	155, 211, 455, 489
NmeAIII	GCCGAG	3 cut(s)	149, 163, 444
PagI	TCATGA	1 cut(s)	334
PciSI	GCTCTTC	1 cut(s)	536
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	359
PflFI	GACNNNGTC	1 cut(s)	128
PflMI	CCANNNNNTGG	1 cut(s)	72
PkrI	GCNGC	1 cut(s)	731
PleI	GAGTC	3 cut(s)	74, 85, 280
PpsI	GAGTC	3 cut(s)	74, 85, 280
Psp1406I	AACGTT	1 cut(s)	384
Psp6I	CCWGG	3 cut(s)	132, 213, 490
PspGI	CCWGG	3 cut(s)	132, 213, 490
PspN4I	GGNNCC	4 cut(s)	155, 211, 455, 489
PspPI	GGNCC	3 cut(s)	75, 153, 172
PsuI	RGATCY	1 cut(s)	46
PsyI	GACNNNGTC	1 cut(s)	128
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
RseI	CAYNNNNRTG	1 cut(s)	524
SalI	GTCGAC	1 cut(s)	179
SapI	GCTCTTC	1 cut(s)	536
SaqAI	TTAA	2 cut(s)	264, 279
SatI	GCNGC	1 cut(s)	730
Sau3AI	GATC	2 cut(s)	46, 468
Sau96I	GGNCC	3 cut(s)	75, 153, 172
SchI	GAGTC	3 cut(s)	74, 85, 280
ScrFI	CCNGG	3 cut(s)	134, 215, 492
SduI	GDGCHC	4 cut(s)	43, 144, 458, 490
SetI	ASST	7 cut(s)	129, 246, 387, 455, 510, 621, 734
SmiMI	CAYNNNNRTG	1 cut(s)	524
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	1 cut(s)	675
SsiI	CCGC	2 cut(s)	446, 596
SspMI	CTAG	2 cut(s)	245, 725
StyD4I	CCNGG	3 cut(s)	132, 213, 490
StyI	CCWWGG	2 cut(s)	458, 525
TaaI	ACNGT	2 cut(s)	295, 579
TaiI	ACGT	2 cut(s)	129, 387
TaqI	TCGA	3 cut(s)	180, 256, 399
TaqII	GACCGA	1 cut(s)	40
TasI	AATT	1 cut(s)	675
TfiI	GAWTC	1 cut(s)	359
Tru1I	TTAA	2 cut(s)	264, 279
Tru9I	TTAA	2 cut(s)	264, 279
TscAI	CASTG	1 cut(s)	526
TseI	GCWGC	1 cut(s)	729
TspDTI	ATGAA	3 cut(s)	236, 417, 763
TspRI	CASTG	1 cut(s)	526
Tth111I	GACNNNGTC	1 cut(s)	128
Van91I	CCANNNNNTGG	1 cut(s)	72
Vha464I	CTTAAG	1 cut(s)	263
XmiI	GTMKAC	1 cut(s)	180
XspI	CTAG	2 cut(s)	245, 725
ZraI	GACGTC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.