Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034918.1

Orthogroup ID

OG0004417

Physical Location & Seq

Genomic Coordinates Forward (+)

1107 .. 1659

Gene Structure 553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034918.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

atggccgtggtagaatatcgccgaccgaggagacagagtgccccagatccactttctctctcctccatcaaatggcccggctccgacccgactctctcctccatcctcctcaactccaacaccgacgtcgtcctggcagagcacagaaagtgggcccaccatcctttctcagccctcgtcgacccgagtgggaaaatctacgccagaggctcccaagacatgaagtgcaacgggcttcagtacctggaggccattcgacggcttaaggcttctgggtttaagcagactcggactgtttacttgtctttcgttcctgatgaggagattggtggtcatgatggcgctgagaagtttgctgaatctgatattttcaaagccttgaacgttgggatagttctcgatgaagggttggcctcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004046 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0016787 GO:0016810 GO:0016811 GO:0031982 GO:0042802 GO:0043226 GO:0043227 GO:0043230 GO:0044421 GO:0070062 GO:1903561

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

M20_dimer Peptidase_M20

Protein Analysis

139

Amino Acids

15.34

Weight (kDa)

6.91

Isoelectric Point (pI)

36.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38220 AT4G38220
fragaria_vesca	FvH4_2g16990
malus_domestica	MD05G1143000.v1.1 MD10G1142800.v1.1 MD15G1413100.v1.1
prunus_persica	Prupe.8G181800_v2.0.a1 Prupe.8G181800_v2.0.a1
pyrus_communis	pycom05g13750 pycom10g12270
rosa_chinensis	RchiOBHm_Chr2g0126171 RchiOBHm_Chr6g0281181
rosa_laevigata	RLG00000012987
rosa_multiflora	Rmu_co8196198.1_g000001 Rmu_co8363365.1_g000001 Rmu_sc0001705.1_g000022 Rmu_sc0012209.1_g000001 Rmu_sc0026953.1_g000001 Rmu_sc0034918.1_g000001 Rmu_sc0035650.1_g000001
rosa_rugosa	Rorug06G0139500 Rorug06G0139500
rosa_samantha	Rh2BG327100 Rh6AG251300 Rh6BG182200 Rh6BG254500 Rh6CG253900 Rh6DG246000
rosa_wichuraiana	Rw2G031780 Rw3G017710 Rw6G021830 Rw7G031480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	129
AccB7I	CCANNNNNTGG	1 cut(s)	72
AccI	GTMKAC	1 cut(s)	180
AclI	AACGTT	1 cut(s)	384
AclWI	GGATC	1 cut(s)	41
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	221
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	2 cut(s)	72, 258
AflII	CTTAAG	1 cut(s)	263
AgsI	TTSAA	2 cut(s)	373, 382
AjnI	CCWGG	2 cut(s)	132, 243
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	1 cut(s)	41
AlwNI	CAGNNNCTG	1 cut(s)	244
Ama87I	CYCGRG	1 cut(s)	184
AoxI	GGCC	5 cut(s)	3, 74, 153, 249, 411
ApaI	GGGCCC	1 cut(s)	157
AspLEI	GCGC	1 cut(s)	344
AspS9I	GGNCC	3 cut(s)	75, 153, 154
AsuC2I	CCSGG	1 cut(s)	78
AvaI	CYCGRG	1 cut(s)	184
BaeGI	GKGCMC	2 cut(s)	43, 157
BanII	GRGCYC	1 cut(s)	157
BauI	CACGAG	1 cut(s)	415
Bbv12I	GWGCWC	1 cut(s)	144
BccI	CCATC	4 cut(s)	74, 110, 168, 332
BceAI	ACGGC	1 cut(s)	275
BciT130I	CCWGG	2 cut(s)	134, 245
BcnI	CCSGG	1 cut(s)	78
BcoDI	GTCTC	1 cut(s)	25
BfoI	RGCGCY	1 cut(s)	345
BfrI	CTTAAG	1 cut(s)	263
Bme1390I	CCNGG	3 cut(s)	78, 134, 245
BmeT110I	CYCGRG	1 cut(s)	184
BmgT120I	GGNCC	3 cut(s)	75, 153, 154
BmiI	GGNNCC	3 cut(s)	82, 155, 211
BmrFI	CCNGG	3 cut(s)	78, 134, 245
BpmI	CTGGAG	1 cut(s)	266
BpuMI	CCSGG	1 cut(s)	78
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	6, 26
BsaXI	ACNNNNNCTCC	2 cut(s)	22, 52
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 258
BseBI	CCWGG	2 cut(s)	134, 245
BseDI	CCNNGG	2 cut(s)	6, 26
BseGI	GGATG	2 cut(s)	102, 160
BseLI	CCNNNNNNNGG	2 cut(s)	72, 258
BseMII	CTCAG	2 cut(s)	183, 336
BseRI	GAGGAG	5 cut(s)	43, 52, 88, 98, 335
BseSI	GKGCMC	2 cut(s)	43, 157
Bsh1285I	CGRYCG	1 cut(s)	26
BshFI	GGCC	5 cut(s)	5, 76, 155, 251, 413
BsiEI	CGRYCG	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	144
BsiHKCI	CYCGRG	1 cut(s)	184
BsiSI	CCGG	1 cut(s)	78
BslI	CCNNNNNNNGG	2 cut(s)	72, 258
BsmAI	GTCTC	1 cut(s)	25
BsnI	GGCC	5 cut(s)	5, 76, 155, 251, 413
BsoBI	CYCGRG	1 cut(s)	184
Bsp120I	GGGCCC	1 cut(s)	153
Bsp1286I	GDGCHC	3 cut(s)	43, 144, 157
Bsp143I	GATC	1 cut(s)	46
BspANI	GGCC	5 cut(s)	5, 76, 155, 251, 413
BspCNI	CTCAG	2 cut(s)	182, 337
BspHI	TCATGA	1 cut(s)	334
BspLI	GGNNCC	3 cut(s)	82, 155, 211
BspPI	GGATC	1 cut(s)	41
BspTI	CTTAAG	1 cut(s)	263
BssECI	CCNNGG	2 cut(s)	6, 26
BssMI	GATC	1 cut(s)	46
BssNI	GRCGYC	1 cut(s)	126
BssSI	CACGAG	1 cut(s)	415
Bst2BI	CACGAG	1 cut(s)	415
Bst2UI	CCWGG	2 cut(s)	134, 245
Bst4CI	ACNGT	1 cut(s)	295
BstACI	GRCGYC	1 cut(s)	126
BstAFI	CTTAAG	1 cut(s)	263
BstDEI	CTNAG	2 cut(s)	169, 345
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	2 cut(s)	102, 160
BstH2I	RGCGCY	1 cut(s)	345
BstHHI	GCGC	1 cut(s)	344
BstKTI	GATC	1 cut(s)	49
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	1 cut(s)	46
BstMCI	CGRYCG	1 cut(s)	26
BstNI	CCWGG	2 cut(s)	134, 245
BstSCI	CCNGG	3 cut(s)	76, 132, 243
BstSLI	GKGCMC	2 cut(s)	43, 157
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BsuRI	GGCC	5 cut(s)	5, 76, 155, 251, 413
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	2 cut(s)	102, 160
CaiI	CAGNNNCTG	1 cut(s)	244
CciI	TCATGA	1 cut(s)	334
CfoI	GCGC	1 cut(s)	344
Cfr13I	GGNCC	3 cut(s)	75, 153, 154
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	2 cut(s)	220, 335
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	2 cut(s)	169, 345
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
EaeI	YGGCCR	1 cut(s)	3
Eco24I	GRGCYC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	221
Eco88I	CYCGRG	1 cut(s)	184
EcoRII	CCWGG	2 cut(s)	132, 243
EcoT38I	GRGCYC	1 cut(s)	157
FaeI	CATG	2 cut(s)	223, 338
FaiI	YATR	2 cut(s)	221, 336
FatI	CATG	2 cut(s)	219, 334
FblI	GTMKAC	1 cut(s)	180
FokI	GGATG	2 cut(s)	89, 147
FriOI	GRGCYC	1 cut(s)	157
GlaI	GCGC	1 cut(s)	343
GsuI	CTGGAG	1 cut(s)	266
HaeII	RGCGCY	1 cut(s)	345
HaeIII	GGCC	5 cut(s)	5, 76, 155, 251, 413
HapII	CCGG	1 cut(s)	78
HhaI	GCGC	1 cut(s)	344
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	2 cut(s)	223, 338
Hin6I	GCGC	1 cut(s)	342
HinP1I	GCGC	1 cut(s)	342
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	3 cut(s)	91, 286, 359
HpaII	CCGG	1 cut(s)	78
Hpy166II	GTNNAC	2 cut(s)	181, 298
Hpy188I	TCNGA	3 cut(s)	85, 291, 364
Hpy188III	TCNNGA	4 cut(s)	314, 335, 398, 417
Hpy8I	GTNNAC	2 cut(s)	181, 298
Hpy99I	CGWCG	4 cut(s)	128, 131, 182, 261
HpyAV	CCTTC	1 cut(s)	398
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4IV	ACGT	2 cut(s)	126, 384
HpyCH4V	TGCA	1 cut(s)	228
HpyF3I	CTNAG	2 cut(s)	169, 345
HpySE526I	ACGT	2 cut(s)	126, 384
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	2 cut(s)	223, 338
HspAI	GCGC	1 cut(s)	342
Kzo9I	GATC	1 cut(s)	46
LmnI	GCTCC	2 cut(s)	86, 215
LpnPI	CCDG	9 cut(s)	57, 91, 119, 146, 217, 230, 257, 258, 327
MaeII	ACGT	2 cut(s)	126, 384
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MflI	RGATCY	1 cut(s)	46
MhlI	GDGCHC	3 cut(s)	43, 144, 157
MlyI	GAGTC	2 cut(s)	85, 280
MmeI	TCCRAC	2 cut(s)	108, 141
MnlI	CCTC	9 cut(s)	21, 73, 109, 116, 119, 185, 200, 241, 313
MseI	TTAA	2 cut(s)	264, 279
MspCI	CTTAAG	1 cut(s)	263
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	3 cut(s)	78, 134, 245
MvaI	CCWGG	2 cut(s)	134, 245
NciI	CCSGG	1 cut(s)	78
NdeII	GATC	1 cut(s)	46
NlaIII	CATG	2 cut(s)	223, 338
NlaIV	GGNNCC	3 cut(s)	82, 155, 211
PagI	TCATGA	1 cut(s)	334
PfeI	GAWTC	1 cut(s)	359
PflFI	GACNNNGTC	1 cut(s)	128
PflMI	CCANNNNNTGG	1 cut(s)	72
PleI	GAGTC	2 cut(s)	85, 280
PpsI	GAGTC	2 cut(s)	85, 280
Psp1406I	AACGTT	1 cut(s)	384
Psp6I	CCWGG	2 cut(s)	132, 243
PspGI	CCWGG	2 cut(s)	132, 243
PspN4I	GGNNCC	3 cut(s)	82, 155, 211
PspOMI	GGGCCC	1 cut(s)	153
PspPI	GGNCC	3 cut(s)	75, 153, 154
PstNI	CAGNNNCTG	1 cut(s)	244
PsuI	RGATCY	1 cut(s)	46
PsyI	GACNNNGTC	1 cut(s)	128
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
SalI	GTCGAC	1 cut(s)	179
SaqAI	TTAA	2 cut(s)	264, 279
Sau3AI	GATC	1 cut(s)	46
Sau96I	GGNCC	3 cut(s)	75, 153, 154
SchI	GAGTC	2 cut(s)	85, 280
ScrFI	CCNGG	3 cut(s)	78, 134, 245
SduI	GDGCHC	3 cut(s)	43, 144, 157
SetI	ASST	3 cut(s)	129, 246, 387
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
StyD4I	CCNGG	3 cut(s)	76, 132, 243
TaaI	ACNGT	1 cut(s)	295
TaiI	ACGT	2 cut(s)	129, 387
TaqI	TCGA	3 cut(s)	180, 256, 399
TaqII	GACCGA	1 cut(s)	40
TfiI	GAWTC	1 cut(s)	359
Tru1I	TTAA	2 cut(s)	264, 279
Tru9I	TTAA	2 cut(s)	264, 279
TspDTI	ATGAA	2 cut(s)	236, 417
Tth111I	GACNNNGTC	1 cut(s)	128
Van91I	CCANNNNNTGG	1 cut(s)	72
Vha464I	CTTAAG	1 cut(s)	263
XmiI	GTMKAC	1 cut(s)	180
ZraI	GACGTC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.