Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0004417

Physical Location & Seq

Genomic Coordinates Forward (+)

52055223 .. 52058401

Gene Structure 3179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G031780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGAAGTACGTCGAGCTTCAGTACCTGGAGGCCATTCGATGGCTTAAGGCTTCCGGGTTTAAGCCGACTCGGACTGTTTACTTGTCTTTCGTTCTTGATGAGGAGATTGGTGGTCATGATGGCGCTGAGAAGTTTGCTGAATCTGATATTTTCAAAGCCTTGAACGTTGGAATAGTTCTCGATGAAGGGTTGGCCTCGCCGAGTGAGCATTATAGGGCCTTCTATGCGGAGAGGTGCCCGTGGTGGCTGATCATCAAGGCTACTGGGGCTCCTGGTCATGGGGCTAAGCTGTATGACAACACTGCCATAGAGAATATATTGAAGAGCATTGAGAGTGTGAGGAGATTGCGTGCTTCGCAGTTTGATTTGGTGAAGGTGGGTTTGAAGGCTGAAGGGGAGGTCGTCTCTGTCAATATGGCATTTTTGAAGGCTGGCACACCCTCTCCGACTATAAAGGTCAAGCTATGGAATGACAAGCGTGAAAGAGAAAGAGTGAAAATTGAATGTCCTCTTAATACAGTTACTGATCTGAAAATCAGGAATGCAACTTTTTTTTTTTTGTGTCCCGTTGTCACTGATTTGAATTACAATTTAGAAACTTCTGAATGGTGCCTAGTTTATGAATATATAATGCTAGTGTATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004046 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0016787 GO:0016810 GO:0016811 GO:0031982 GO:0042802 GO:0043226 GO:0043227 GO:0043230 GO:0044421 GO:0070062 GO:1903561

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

M20_dimer Peptidase_M20

Protein Analysis

215

Amino Acids

24.5

Weight (kDa)

6.34

Isoelectric Point (pI)

42.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M20	PF01546	1 - 58	5.9e-07	Peptidase family M20/M25/M40

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38220 AT4G38220
fragaria_vesca	FvH4_2g16990
malus_domestica	MD05G1143000.v1.1 MD10G1142800.v1.1 MD15G1413100.v1.1
prunus_persica	Prupe.8G181800_v2.0.a1 Prupe.8G181800_v2.0.a1
pyrus_communis	pycom05g13750 pycom10g12270
rosa_chinensis	RchiOBHm_Chr2g0126171 RchiOBHm_Chr6g0281181
rosa_laevigata	RLG00000012987
rosa_multiflora	Rmu_co8196198.1_g000001 Rmu_co8363365.1_g000001 Rmu_sc0001705.1_g000022 Rmu_sc0012209.1_g000001 Rmu_sc0026953.1_g000001 Rmu_sc0034918.1_g000001 Rmu_sc0035650.1_g000001
rosa_rugosa	Rorug06G0139500 Rorug06G0139500
rosa_samantha	Rh2BG327100 Rh6AG251300 Rh6BG182200 Rh6BG254500 Rh6CG253900 Rh6DG246000
rosa_wichuraiana	Rw2G031780 Rw3G017710 Rw6G021830 Rw7G031480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	234, 609
AccB7I	CCANNNNNTGG	1 cut(s)	39
AciI	CCGC	1 cut(s)	227
AclI	AACGTT	1 cut(s)	165
AcuI	CTGAAG	1 cut(s)	411
AfaI	GTAC	2 cut(s)	8, 23
AfiI	CCNNNNNNNGG	2 cut(s)	39, 278
AflII	CTTAAG	1 cut(s)	44
AgsI	TTSAA	7 cut(s)	154, 163, 322, 385, 427, 503, 583
AjnI	CCWGG	2 cut(s)	24, 271
AluBI	AGCT	3 cut(s)	16, 289, 463
AluI	AGCT	3 cut(s)	16, 289, 463
Alw26I	GTCTC	1 cut(s)	409
AlwNI	CAGNNNCTG	2 cut(s)	25, 524
AoxI	GGCC	3 cut(s)	30, 192, 216
AspLEI	GCGC	1 cut(s)	125
AspS9I	GGNCC	1 cut(s)	216
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	382
BaeGI	GKGCMC	1 cut(s)	239
BanI	GGYRCC	2 cut(s)	234, 609
BanII	GRGCYC	1 cut(s)	271
BccI	CCATC	2 cut(s)	33, 113
BciT130I	CCWGG	2 cut(s)	26, 273
BclI	TGATCA	1 cut(s)	249
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	409
BfaI	CTAG	2 cut(s)	614, 635
BfoI	RGCGCY	1 cut(s)	126
BfrI	CTTAAG	1 cut(s)	44
BlpI	GCTNAGC	1 cut(s)	285
Bme1390I	CCNGG	3 cut(s)	26, 55, 273
BmgT120I	GGNCC	1 cut(s)	216
BmiI	GGNNCC	3 cut(s)	236, 270, 611
BmrFI	CCNGG	3 cut(s)	26, 55, 273
BmrI	ACTGGG	1 cut(s)	273
BmuI	ACTGGG	1 cut(s)	273
BplI	GAGNNNNNCTC	2 cut(s)	389, 421
BpmI	CTGGAG	1 cut(s)	47
Bpu1102I	GCTNAGC	1 cut(s)	285
BpuMI	CCSGG	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	239
BsaXI	ACNNNNNCTCC	6 cut(s)	253, 283, 334, 364, 427, 457
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 278
Bse1I	ACTGG	1 cut(s)	268
BseBI	CCWGG	2 cut(s)	26, 273
BseDI	CCNNGG	1 cut(s)	239
BseLI	CCNNNNNNNGG	2 cut(s)	39, 278
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	1 cut(s)	268
BseRI	GAGGAG	2 cut(s)	116, 355
BseSI	GKGCMC	1 cut(s)	239
BshFI	GGCC	3 cut(s)	32, 194, 218
BshNI	GGYRCC	2 cut(s)	234, 609
BsiSI	CCGG	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	549
BslI	CCNNNNNNNGG	2 cut(s)	39, 278
BsmAI	GTCTC	1 cut(s)	409
BsmBI	CGTCTC	1 cut(s)	409
BsmFI	GGGAC	1 cut(s)	549
BsmI	GAATGC	1 cut(s)	547
BsnI	GGCC	3 cut(s)	32, 194, 218
Bsp1286I	GDGCHC	2 cut(s)	239, 271
Bsp143I	GATC	2 cut(s)	249, 526
Bsp1720I	GCTNAGC	1 cut(s)	285
BspACI	CCGC	1 cut(s)	227
BspANI	GGCC	3 cut(s)	32, 194, 218
BspCNI	CTCAG	1 cut(s)	118
BspHI	TCATGA	1 cut(s)	115
BspLI	GGNNCC	3 cut(s)	236, 270, 611
BspQI	GCTCTTC	1 cut(s)	317
BspT107I	GGYRCC	2 cut(s)	234, 609
BspTI	CTTAAG	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	268
BssECI	CCNNGG	1 cut(s)	239
BssMI	GATC	2 cut(s)	249, 526
Bst2UI	CCWGG	2 cut(s)	26, 273
Bst4CI	ACNGT	2 cut(s)	76, 520
Bst6I	CTCTTC	1 cut(s)	317
BstAFI	CTTAAG	1 cut(s)	44
BstC8I	GCNNGC	2 cut(s)	351, 433
BstDEI	CTNAG	3 cut(s)	126, 285, 645
BstDSI	CCRYGG	1 cut(s)	239
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	2 cut(s)	252, 529
BstMAI	GTCTC	1 cut(s)	409
BstMBI	GATC	2 cut(s)	249, 526
BstMWI	GCNNNNNNNGC	4 cut(s)	205, 224, 266, 355
BstNI	CCWGG	2 cut(s)	26, 273
BstSCI	CCNGG	3 cut(s)	24, 53, 271
BstSLI	GKGCMC	1 cut(s)	239
BsuRI	GGCC	3 cut(s)	32, 194, 218
BtgI	CCRYGG	1 cut(s)	239
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	2 cut(s)	300, 573
Cac8I	GCNNGC	2 cut(s)	351, 433
CaiI	CAGNNNCTG	2 cut(s)	25, 524
CciI	TCATGA	1 cut(s)	115
CfoI	GCGC	1 cut(s)	125
Cfr13I	GGNCC	1 cut(s)	216
Csp6I	GTAC	2 cut(s)	7, 22
CviAII	CATG	2 cut(s)	116, 278
CviQI	GTAC	2 cut(s)	7, 22
DdeI	CTNAG	3 cut(s)	126, 285, 645
DpnI	GATC	2 cut(s)	251, 528
DpnII	GATC	2 cut(s)	249, 526
Eam1104I	CTCTTC	1 cut(s)	317
EarI	CTCTTC	1 cut(s)	317
Eco24I	GRGCYC	1 cut(s)	271
Eco57I	CTGAAG	1 cut(s)	411
EcoO109I	RGGNCCY	1 cut(s)	216
EcoRII	CCWGG	2 cut(s)	24, 271
EcoT38I	GRGCYC	1 cut(s)	271
Esp3I	CGTCTC	1 cut(s)	409
FaeI	CATG	2 cut(s)	119, 281
FaqI	GGGAC	1 cut(s)	549
FatI	CATG	2 cut(s)	115, 277
FbaI	TGATCA	1 cut(s)	249
FriOI	GRGCYC	1 cut(s)	271
FspBI	CTAG	2 cut(s)	614, 635
GlaI	GCGC	1 cut(s)	124
GsuI	CTGGAG	1 cut(s)	47
HaeII	RGCGCY	1 cut(s)	126
HaeIII	GGCC	3 cut(s)	32, 194, 218
HapII	CCGG	1 cut(s)	54
HhaI	GCGC	1 cut(s)	125
Hin1II	CATG	2 cut(s)	119, 281
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HinfI	GANTC	2 cut(s)	67, 140
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	1 cut(s)	382
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	5 cut(s)	72, 145, 447, 531, 604
Hpy188III	TCNNGA	4 cut(s)	95, 116, 179, 538
Hpy8I	GTNNAC	1 cut(s)	79
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	6 cut(s)	179, 229, 367, 379, 386, 421
HpyCH4III	ACNGT	2 cut(s)	76, 520
HpyCH4IV	ACGT	2 cut(s)	9, 165
HpyCH4V	TGCA	1 cut(s)	545
HpyF10VI	GCNNNNNNNGC	4 cut(s)	205, 224, 266, 355
HpyF3I	CTNAG	3 cut(s)	126, 285, 645
HpySE526I	ACGT	2 cut(s)	9, 165
Hsp92II	CATG	2 cut(s)	119, 281
HspAI	GCGC	1 cut(s)	123
Ksp22I	TGATCA	1 cut(s)	249
Kzo9I	GATC	2 cut(s)	249, 526
LguI	GCTCTTC	1 cut(s)	317
LmnI	GCTCC	1 cut(s)	274
LpnPI	CCDG	8 cut(s)	11, 38, 67, 249, 258, 285, 417, 523
MaeI	CTAG	2 cut(s)	614, 635
MaeII	ACGT	2 cut(s)	9, 165
MaeIII	GTNAC	2 cut(s)	520, 571
MalI	GATC	2 cut(s)	251, 528
MboI	GATC	2 cut(s)	249, 526
MboII	GAAGA	1 cut(s)	334
MhlI	GDGCHC	2 cut(s)	239, 271
MluCI	AATT	3 cut(s)	498, 583, 589
MlyI	GAGTC	1 cut(s)	61
MmeI	TCCRAC	2 cut(s)	148, 470
MnlI	CCTC	8 cut(s)	22, 94, 205, 225, 333, 391, 451, 519
MseI	TTAA	3 cut(s)	45, 60, 513
MspCI	CTTAAG	1 cut(s)	44
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	3 cut(s)	26, 55, 273
Mva1269I	GAATGC	1 cut(s)	547
MvaI	CCWGG	2 cut(s)	26, 273
MwoI	GCNNNNNNNGC	4 cut(s)	205, 224, 266, 355
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	2 cut(s)	249, 526
NlaIII	CATG	2 cut(s)	119, 281
NlaIV	GGNNCC	3 cut(s)	236, 270, 611
NmeAIII	GCCGAG	1 cut(s)	225
NmuCI	GTSAC	1 cut(s)	571
PagI	TCATGA	1 cut(s)	115
PciSI	GCTCTTC	1 cut(s)	317
PctI	GAATGC	1 cut(s)	547
PfeI	GAWTC	1 cut(s)	140
PflMI	CCANNNNNTGG	1 cut(s)	39
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
Psp1406I	AACGTT	1 cut(s)	165
Psp6I	CCWGG	2 cut(s)	24, 271
PspGI	CCWGG	2 cut(s)	24, 271
PspN4I	GGNNCC	3 cut(s)	236, 270, 611
PspPI	GGNCC	1 cut(s)	216
PstNI	CAGNNNCTG	2 cut(s)	25, 524
RsaI	GTAC	2 cut(s)	8, 23
RsaNI	GTAC	2 cut(s)	7, 22
SapI	GCTCTTC	1 cut(s)	317
SaqAI	TTAA	3 cut(s)	45, 60, 513
Sau3AI	GATC	2 cut(s)	249, 526
Sau96I	GGNCC	1 cut(s)	216
SchI	GAGTC	1 cut(s)	61
ScrFI	CCNGG	3 cut(s)	26, 55, 273
SduI	GDGCHC	2 cut(s)	239, 271
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	3 cut(s)	498, 583, 589
SsiI	CCGC	1 cut(s)	227
SspMI	CTAG	2 cut(s)	614, 635
StyD4I	CCNGG	3 cut(s)	24, 53, 271
TaaI	ACNGT	2 cut(s)	76, 520
TaiI	ACGT	2 cut(s)	12, 168
TaqI	TCGA	3 cut(s)	12, 37, 180
TasI	AATT	3 cut(s)	498, 583, 589
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	3 cut(s)	45, 60, 513
Tru9I	TTAA	3 cut(s)	45, 60, 513
TscAI	CASTG	2 cut(s)	307, 580
TseFI	GTSAC	1 cut(s)	571
Tsp45I	GTSAC	1 cut(s)	571
TspDTI	ATGAA	3 cut(s)	17, 198, 636
TspRI	CASTG	2 cut(s)	307, 580
Van91I	CCANNNNNTGG	1 cut(s)	39
Vha464I	CTTAAG	1 cut(s)	44
XspI	CTAG	2 cut(s)	614, 635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.