Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026953.1

Orthogroup ID

OG0004417

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1448

Gene Structure 1448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026953.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ctaattgagaagggacccactagagattacacgggtcgccctttaatgacccaaaccgatgattccaatccatggtggtctattttcaagcaagctgtcgcagcagctggagggaaacttgcaaagcctgaaatcttggcttcaaccactgatgcacggttcatgagacagcaaggcattcctactctcggtttctccccaatgacaaatactccaatcttactgcacgaccataatgagttcttaaaagataccatattcttgaaaggcatcaaagtatatgaatctataatcagtgctttgagttccttcgagggaggatcacgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004046 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0016787 GO:0016810 GO:0016811 GO:0031982 GO:0042802 GO:0043226 GO:0043227 GO:0043230 GO:0044421 GO:0070062 GO:1903561

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

109

Amino Acids

12.04

Weight (kDa)

8.26

Isoelectric Point (pI)

24.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38220 AT4G38220
fragaria_vesca	FvH4_2g16990
malus_domestica	MD05G1143000.v1.1 MD10G1142800.v1.1 MD15G1413100.v1.1
prunus_persica	Prupe.8G181800_v2.0.a1 Prupe.8G181800_v2.0.a1
pyrus_communis	pycom05g13750 pycom10g12270
rosa_chinensis	RchiOBHm_Chr2g0126171 RchiOBHm_Chr6g0281181
rosa_laevigata	RLG00000012987
rosa_multiflora	Rmu_co8196198.1_g000001 Rmu_co8363365.1_g000001 Rmu_sc0001705.1_g000022 Rmu_sc0012209.1_g000001 Rmu_sc0026953.1_g000001 Rmu_sc0034918.1_g000001 Rmu_sc0035650.1_g000001
rosa_rugosa	Rorug06G0139500 Rorug06G0139500
rosa_samantha	Rh2BG327100 Rh6AG251300 Rh6BG182200 Rh6BG254500 Rh6CG253900 Rh6DG246000
rosa_wichuraiana	Rw2G031780 Rw3G017710 Rw6G021830 Rw7G031480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	72
AclWI	GGATC	1 cut(s)	328
AfiI	CCNNNNNNNGG	2 cut(s)	72, 188
AgsI	TTSAA	3 cut(s)	88, 144, 265
AluBI	AGCT	2 cut(s)	95, 107
AluI	AGCT	2 cut(s)	95, 107
Alw26I	GTCTC	1 cut(s)	160
AlwI	GGATC	1 cut(s)	328
AlwNI	CAGNNNCTG	1 cut(s)	107
ApeKI	GCWGC	2 cut(s)	101, 104
AspS9I	GGNCC	1 cut(s)	14
AvaII	GGWCC	1 cut(s)	14
BbvI	GCAGC	2 cut(s)	113, 116
BcoDI	GTCTC	1 cut(s)	160
BfaI	CTAG	1 cut(s)	21
BisI	GCNGC	2 cut(s)	102, 105
BlsI	GCNGC	2 cut(s)	103, 106
Bme18I	GGWCC	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	14
BmiI	GGNNCC	2 cut(s)	15, 16
BmsI	GCATC	2 cut(s)	142, 279
BpmI	CTGGAG	1 cut(s)	129
BsaBI	GATNNNNATC	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	71
BsaXI	ACNNNNNCTCC	2 cut(s)	196, 226
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 188
Bse8I	GATNNNNATC	1 cut(s)	66
BseDI	CCNNGG	1 cut(s)	71
BseJI	GATNNNNATC	1 cut(s)	66
BseLI	CCNNNNNNNGG	2 cut(s)	72, 188
BseXI	GCAGC	2 cut(s)	113, 116
BsgI	GTGCAG	1 cut(s)	209
BslFI	GGGAC	1 cut(s)	27
BslI	CCNNNNNNNGG	2 cut(s)	72, 188
BsmAI	GTCTC	1 cut(s)	160
BsmFI	GGGAC	1 cut(s)	27
BsmI	GAATGC	1 cut(s)	177
Bsp143I	GATC	1 cut(s)	320
Bsp19I	CCATGG	1 cut(s)	71
BspHI	TCATGA	1 cut(s)	162
BspLI	GGNNCC	2 cut(s)	15, 16
BspPI	GGATC	1 cut(s)	328
BssECI	CCNNGG	1 cut(s)	71
BssMI	GATC	1 cut(s)	320
BssT1I	CCWWGG	1 cut(s)	71
Bst4CI	ACNGT	1 cut(s)	159
BstC8I	GCNNGC	1 cut(s)	93
BstDSI	CCRYGG	1 cut(s)	71
BstKTI	GATC	1 cut(s)	323
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	1 cut(s)	320
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstV1I	GCAGC	2 cut(s)	113, 116
BtgI	CCRYGG	1 cut(s)	71
BtsIMutI	CAGTG	2 cut(s)	147, 301
Cac8I	GCNNGC	1 cut(s)	93
CaiI	CAGNNNCTG	1 cut(s)	107
CciI	TCATGA	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	14
CviAII	CATG	2 cut(s)	72, 163
CviJI	RGCY	4 cut(s)	95, 107, 127, 140
CviKI_1	RGCY	4 cut(s)	95, 107, 127, 140
DpnI	GATC	1 cut(s)	322
DpnII	GATC	1 cut(s)	320
Eco130I	CCWWGG	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	14
EcoO109I	RGGNCCY	1 cut(s)	14
EcoT14I	CCWWGG	1 cut(s)	71
ErhI	CCWWGG	1 cut(s)	71
FaeI	CATG	2 cut(s)	75, 166
FaiI	YATR	7 cut(s)	73, 164, 234, 257, 280, 282, 290
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	2 cut(s)	71, 162
Fnu4HI	GCNGC	2 cut(s)	102, 105
Fsp4HI	GCNGC	2 cut(s)	102, 105
FspBI	CTAG	1 cut(s)	21
GluI	GCNGC	2 cut(s)	102, 105
GsuI	CTGGAG	1 cut(s)	129
Hin1II	CATG	2 cut(s)	75, 166
HinfI	GANTC	2 cut(s)	62, 284
Hpy188III	TCNNGA	2 cut(s)	163, 262
HpyAV	CCTTC	2 cut(s)	4, 319
HpyCH4III	ACNGT	1 cut(s)	159
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	3 cut(s)	122, 155, 226
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
HpySE526I	ACGT	1 cut(s)	325
Hsp92II	CATG	2 cut(s)	75, 166
KflI	GGGWCCC	1 cut(s)	14
Kzo9I	GATC	1 cut(s)	320
LpnPI	CCDG	2 cut(s)	93, 141
Lsp1109I	GCAGC	2 cut(s)	113, 116
LweI	GCATC	2 cut(s)	142, 279
MaeI	CTAG	1 cut(s)	21
MaeII	ACGT	1 cut(s)	325
MalI	GATC	1 cut(s)	322
MboI	GATC	1 cut(s)	320
MluCI	AATT	1 cut(s)	3
MnlI	CCTC	3 cut(s)	104, 307, 311
MseI	TTAA	2 cut(s)	44, 245
MspA1I	CMGCKG	1 cut(s)	107
Mva1269I	GAATGC	1 cut(s)	177
MwoI	GCNNNNNNNGC	1 cut(s)	101
NcoI	CCATGG	1 cut(s)	71
NdeII	GATC	1 cut(s)	320
NlaIII	CATG	2 cut(s)	75, 166
NlaIV	GGNNCC	2 cut(s)	15, 16
PagI	TCATGA	1 cut(s)	162
PctI	GAATGC	1 cut(s)	177
PfeI	GAWTC	2 cut(s)	62, 284
PflMI	CCANNNNNTGG	1 cut(s)	72
PkrI	GCNGC	2 cut(s)	103, 106
PpuMI	RGGWCCY	1 cut(s)	14
Psp5II	RGGWCCY	1 cut(s)	14
PspN4I	GGNNCC	2 cut(s)	15, 16
PspPI	GGNCC	1 cut(s)	14
PspPPI	RGGWCCY	1 cut(s)	14
PstNI	CAGNNNCTG	1 cut(s)	107
PvuII	CAGCTG	1 cut(s)	107
SaqAI	TTAA	2 cut(s)	44, 245
SatI	GCNGC	2 cut(s)	102, 105
Sau3AI	GATC	1 cut(s)	320
Sau96I	GGNCC	1 cut(s)	14
SetI	ASST	3 cut(s)	97, 109, 328
SfaNI	GCATC	2 cut(s)	142, 279
SinI	GGWCC	1 cut(s)	14
Sse9I	AATT	1 cut(s)	3
SspMI	CTAG	1 cut(s)	21
StyI	CCWWGG	1 cut(s)	71
TaaI	ACNGT	1 cut(s)	159
TaiI	ACGT	1 cut(s)	328
TaqI	TCGA	1 cut(s)	312
TasI	AATT	1 cut(s)	3
TfiI	GAWTC	2 cut(s)	62, 284
Tru1I	TTAA	2 cut(s)	44, 245
Tru9I	TTAA	2 cut(s)	44, 245
TscAI	CASTG	2 cut(s)	154, 301
TseI	GCWGC	2 cut(s)	101, 104
TspDTI	ATGAA	2 cut(s)	151, 297
TspRI	CASTG	2 cut(s)	154, 301
Van91I	CCANNNNNTGG	1 cut(s)	72
VpaK11BI	GGWCC	1 cut(s)	14
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.