Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8196198.1

Orthogroup ID

OG0004417

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 656

Gene Structure 656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8196198.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

cggcttaaggcttctgggtttaagcccactcggactgtttacttgtctttcgttcctgatgaggagattggtggccatgacggcgctgagaagtttgctgaatctgatgttttcaaggccttgaacgttgggatagttctcgatgaaggtttggcctcgccgagtgagcattacagggctttctatgcggagaggtgcccatggtggctgatcatcaaggctactggggctcctggtcatggggctaagctgtatgacaatactgctatggagaatctattgaagagcattgagagtgtgaggaggttccgtgcttcgcagtttgatttggtgaaggcgggtttgaaggctgaaggggaggttgtctcggtcaatatggcatttttgaaggctggcacacccagtccaactgtaagtttactcattttggtgcttttttgtgcgggattgtggtggtccattgtagttcttggtgtaatggattattgttctttaggatcaaatcatgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004046 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0016787 GO:0016810 GO:0016811 GO:0031982 GO:0042802 GO:0043226 GO:0043227 GO:0043230 GO:0044421 GO:0070062 GO:1903561

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

M20_dimer Peptidase_M20

Protein Analysis

170

Amino Acids

18.55

Weight (kDa)

6.48

Isoelectric Point (pI)

32.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38220 AT4G38220
fragaria_vesca	FvH4_2g16990
malus_domestica	MD05G1143000.v1.1 MD10G1142800.v1.1 MD15G1413100.v1.1
prunus_persica	Prupe.8G181800_v2.0.a1 Prupe.8G181800_v2.0.a1
pyrus_communis	pycom05g13750 pycom10g12270
rosa_chinensis	RchiOBHm_Chr2g0126171 RchiOBHm_Chr6g0281181
rosa_laevigata	RLG00000012987
rosa_multiflora	Rmu_co8196198.1_g000001 Rmu_co8363365.1_g000001 Rmu_sc0001705.1_g000022 Rmu_sc0012209.1_g000001 Rmu_sc0026953.1_g000001 Rmu_sc0034918.1_g000001 Rmu_sc0035650.1_g000001
rosa_rugosa	Rorug06G0139500 Rorug06G0139500
rosa_samantha	Rh2BG327100 Rh6AG251300 Rh6BG182200 Rh6BG254500 Rh6CG253900 Rh6DG246000
rosa_wichuraiana	Rw2G031780 Rw3G017710 Rw6G021830 Rw7G031480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	195
AciI	CCGC	3 cut(s)	188, 338, 443
AclI	AACGTT	1 cut(s)	126
AclWI	GGATC	1 cut(s)	505
AcoI	YGGCCR	1 cut(s)	73
AcuI	CTGAAG	1 cut(s)	372
AfiI	CCNNNNNNNGG	1 cut(s)	239
AflII	CTTAAG	1 cut(s)	5
AgsI	TTSAA	5 cut(s)	115, 124, 283, 346, 388
AjnI	CCWGG	1 cut(s)	232
AluBI	AGCT	1 cut(s)	250
AluI	AGCT	1 cut(s)	250
Alw26I	GTCTC	1 cut(s)	370
AlwI	GGATC	1 cut(s)	505
AoxI	GGCC	3 cut(s)	73, 117, 153
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	1 cut(s)	456
AsuHPI	GGTGA	1 cut(s)	343
AvaII	GGWCC	1 cut(s)	456
BaeGI	GKGCMC	1 cut(s)	200
BalI	TGGCCA	1 cut(s)	75
BanI	GGYRCC	1 cut(s)	195
BanII	GRGCYC	1 cut(s)	232
BceAI	ACGGC	1 cut(s)	97
BciT130I	CCWGG	1 cut(s)	234
BclI	TGATCA	1 cut(s)	210
BcoDI	GTCTC	1 cut(s)	370
BfoI	RGCGCY	1 cut(s)	87
BfrI	CTTAAG	1 cut(s)	5
BglI	GCCNNNNNGGC	1 cut(s)	81
BlpI	GCTNAGC	1 cut(s)	246
Bme1390I	CCNGG	1 cut(s)	234
Bme18I	GGWCC	1 cut(s)	456
BmgT120I	GGNCC	1 cut(s)	456
BmiI	GGNNCC	3 cut(s)	197, 231, 308
BmrFI	CCNGG	1 cut(s)	234
BmrI	ACTGGG	2 cut(s)	234, 396
BmuI	ACTGGG	2 cut(s)	234, 396
BplI	GAGNNNNNCTC	2 cut(s)	350, 382
Bpu1102I	GCTNAGC	1 cut(s)	246
BsaJI	CCNNGG	1 cut(s)	200
BsaXI	ACNNNNNCTCC	4 cut(s)	214, 244, 295, 325
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse1I	ACTGG	2 cut(s)	229, 402
BseBI	CCWGG	1 cut(s)	234
BseDI	CCNNGG	1 cut(s)	200
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseMII	CTCAG	1 cut(s)	78
BseNI	ACTGG	2 cut(s)	229, 402
BseRI	GAGGAG	2 cut(s)	77, 316
BseSI	GKGCMC	1 cut(s)	200
BshFI	GGCC	3 cut(s)	75, 119, 155
BshNI	GGYRCC	1 cut(s)	195
BslI	CCNNNNNNNGG	1 cut(s)	239
BsmAI	GTCTC	1 cut(s)	370
BsnI	GGCC	3 cut(s)	75, 119, 155
Bsp1286I	GDGCHC	2 cut(s)	200, 232
Bsp143I	GATC	2 cut(s)	210, 497
Bsp1720I	GCTNAGC	1 cut(s)	246
Bsp19I	CCATGG	1 cut(s)	200
BspACI	CCGC	3 cut(s)	188, 338, 443
BspANI	GGCC	3 cut(s)	75, 119, 155
BspCNI	CTCAG	1 cut(s)	79
BspLI	GGNNCC	3 cut(s)	197, 231, 308
BspPI	GGATC	1 cut(s)	505
BspQI	GCTCTTC	1 cut(s)	278
BspT107I	GGYRCC	1 cut(s)	195
BspTI	CTTAAG	1 cut(s)	5
BsrI	ACTGG	2 cut(s)	229, 402
BssECI	CCNNGG	1 cut(s)	200
BssMI	GATC	2 cut(s)	210, 497
BssT1I	CCWWGG	1 cut(s)	200
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	2 cut(s)	37, 412
Bst6I	CTCTTC	1 cut(s)	278
BstAFI	CTTAAG	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	394
BstDEI	CTNAG	2 cut(s)	87, 246
BstDSI	CCRYGG	1 cut(s)	200
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	2 cut(s)	213, 500
BstMAI	GTCTC	1 cut(s)	370
BstMBI	GATC	2 cut(s)	210, 497
BstMWI	GCNNNNNNNGC	4 cut(s)	81, 166, 185, 227
BstNI	CCWGG	1 cut(s)	234
BstSCI	CCNGG	1 cut(s)	232
BstSLI	GKGCMC	1 cut(s)	200
BsuRI	GGCC	3 cut(s)	75, 119, 155
BtgI	CCRYGG	1 cut(s)	200
Cac8I	GCNNGC	1 cut(s)	394
CfoI	GCGC	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	456
CviAII	CATG	4 cut(s)	77, 201, 239, 506
DdeI	CTNAG	2 cut(s)	87, 246
DpnI	GATC	2 cut(s)	212, 499
DpnII	GATC	2 cut(s)	210, 497
EaeI	YGGCCR	1 cut(s)	73
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
Eco130I	CCWWGG	1 cut(s)	200
Eco147I	AGGCCT	1 cut(s)	119
Eco24I	GRGCYC	1 cut(s)	232
Eco47I	GGWCC	1 cut(s)	456
Eco57I	CTGAAG	1 cut(s)	372
EcoRII	CCWGG	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	200
EcoT38I	GRGCYC	1 cut(s)	232
ErhI	CCWWGG	1 cut(s)	200
FaeI	CATG	4 cut(s)	80, 204, 242, 509
FaiI	YATR	8 cut(s)	78, 186, 202, 240, 255, 269, 377, 507
FatI	CATG	4 cut(s)	76, 200, 238, 505
FauI	CCCGC	2 cut(s)	331, 436
FbaI	TGATCA	1 cut(s)	210
FriOI	GRGCYC	1 cut(s)	232
GlaI	GCGC	1 cut(s)	85
HaeII	RGCGCY	1 cut(s)	87
HaeIII	GGCC	3 cut(s)	75, 119, 155
HhaI	GCGC	1 cut(s)	86
Hin1II	CATG	4 cut(s)	80, 204, 242, 509
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HinfI	GANTC	2 cut(s)	101, 274
HphI	GGTGA	1 cut(s)	343
Hpy166II	GTNNAC	2 cut(s)	40, 419
Hpy188I	TCNGA	2 cut(s)	33, 106
Hpy188III	TCNNGA	2 cut(s)	56, 140
Hpy8I	GTNNAC	2 cut(s)	40, 419
HpyAV	CCTTC	5 cut(s)	140, 328, 340, 347, 382
HpyCH4III	ACNGT	2 cut(s)	37, 412
HpyCH4IV	ACGT	1 cut(s)	126
HpyF10VI	GCNNNNNNNGC	4 cut(s)	81, 166, 185, 227
HpyF3I	CTNAG	2 cut(s)	87, 246
HpySE526I	ACGT	1 cut(s)	126
Hsp92II	CATG	4 cut(s)	80, 204, 242, 509
HspAI	GCGC	1 cut(s)	84
Ksp22I	TGATCA	1 cut(s)	210
Kzo9I	GATC	2 cut(s)	210, 497
LguI	GCTCTTC	1 cut(s)	278
LmnI	GCTCC	1 cut(s)	235
LpnPI	CCDG	7 cut(s)	69, 160, 210, 219, 246, 378, 415
MaeII	ACGT	1 cut(s)	126
MalI	GATC	2 cut(s)	212, 499
MboI	GATC	2 cut(s)	210, 497
MboII	GAAGA	1 cut(s)	295
MhlI	GDGCHC	2 cut(s)	200, 232
MlsI	TGGCCA	1 cut(s)	75
MluNI	TGGCCA	1 cut(s)	75
MmeI	TCCRAC	1 cut(s)	431
MnlI	CCTC	6 cut(s)	55, 166, 186, 294, 297, 352
Mox20I	TGGCCA	1 cut(s)	75
MscI	TGGCCA	1 cut(s)	75
MseI	TTAA	3 cut(s)	6, 21, 511
MslI	CAYNNNNRTG	1 cut(s)	428
Msp20I	TGGCCA	1 cut(s)	75
MspCI	CTTAAG	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	234
MvaI	CCWGG	1 cut(s)	234
MwoI	GCNNNNNNNGC	4 cut(s)	81, 166, 185, 227
NcoI	CCATGG	1 cut(s)	200
NdeII	GATC	2 cut(s)	210, 497
NlaIII	CATG	4 cut(s)	80, 204, 242, 509
NlaIV	GGNNCC	3 cut(s)	197, 231, 308
NmeAIII	GCCGAG	1 cut(s)	186
PceI	AGGCCT	1 cut(s)	119
PciSI	GCTCTTC	1 cut(s)	278
PfeI	GAWTC	2 cut(s)	101, 274
Psp1406I	AACGTT	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	232
PspN4I	GGNNCC	3 cut(s)	197, 231, 308
PspPI	GGNCC	1 cut(s)	456
RseI	CAYNNNNRTG	1 cut(s)	428
SapI	GCTCTTC	1 cut(s)	278
SaqAI	TTAA	3 cut(s)	6, 21, 511
Sau3AI	GATC	2 cut(s)	210, 497
Sau96I	GGNCC	1 cut(s)	456
ScrFI	CCNGG	1 cut(s)	234
SduI	GDGCHC	2 cut(s)	200, 232
SetI	ASST	6 cut(s)	129, 151, 197, 252, 308, 363
SinI	GGWCC	1 cut(s)	456
SmiMI	CAYNNNNRTG	1 cut(s)	428
SmlI	CTYRAG	1 cut(s)	5
SmoI	CTYRAG	1 cut(s)	5
SseBI	AGGCCT	1 cut(s)	119
SsiI	CCGC	3 cut(s)	188, 338, 443
StuI	AGGCCT	1 cut(s)	119
StyD4I	CCNGG	1 cut(s)	232
StyI	CCWWGG	1 cut(s)	200
TaaI	ACNGT	2 cut(s)	37, 412
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	1 cut(s)	141
TaqII	GACCGA	1 cut(s)	358
TfiI	GAWTC	2 cut(s)	101, 274
Tru1I	TTAA	3 cut(s)	6, 21, 511
Tru9I	TTAA	3 cut(s)	6, 21, 511
TspDTI	ATGAA	1 cut(s)	159
TspGWI	ACGGA	1 cut(s)	299
Vha464I	CTTAAG	1 cut(s)	5
VpaK11BI	GGWCC	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.