AT4G38220

N-acyl-L-amino-acid amidohydrolase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
17925180 .. 17927188
2009 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G38220.1

Sequence Viewer

Length: 1293 bp
ATGAGTCTTCTTCGTCTTCTCCTCGTTGTTGTTGTTCTTCATCTTTCTGCGGTGGCCGGCGACGACGCCATCGTCTCCAGATTCCAGGAGTACCTCCGAATCAACACGGTTCAGCCCAACCCGGAATACTACAAAGCCGTTGACTTTATAATATCTCAGGCGAAACCACTGTCCCTCGAATCTCAGACGATCGAATTTGTAAAAGGAAAGCCGCTTCTCCTCCTCAAATGGGTTGGCTCCGACCCAACCCTACCTGCCTTTCTCCTCAACTCCCACACCGATGTCGTTCCCTTCGAGGACTCCAAGTGGACTCACCATCCGCTCCAAGCTCACATGGACCACCATGGCGACATCTATGCCAGGGGTTCCCAGGACATGAAGTGCGTCGGGATGCAGTACCTCGAGGCCATACGCAAGCTCCAGGCTTCTGGCTTCAAGCCACTCCGATCCGTCTATCTCTCCTTCGTCCCCGATGAAGAGATTGGCGGCCACGATGGCGCAGAGAAGTTTGCTGAATCCCAATTATTCAAGAGCTTGAACATCGCAATCGTGCTCGACGAAGGCCTGCCATCGCCTACTGAGAGTTACAGAGTATTCTATGGAGAGAGGAGTCCCTGGTGGCTGGTGATTAAGGCTAAAGGTCCACCTGGCCACGGTGCCAAGCTCTATGACAACTCTGCCATGGAGAATCTGCTCAAAAGCATTGAGAGTATTCGCAGATTCAGAGCTTCTCAGTTCGATCTTCTCAAAGCTGGTGGGATAGCTGAAGGCGATGTTGTCTCTGTGAACATGGCCTTCCTCAAGGCTGGCACACCTTCTCCAACTGGTTTCGTAATGAATCTGCAACCATCTGAGGCAGAAGCTGGTTTCGACATTCGTGTTCCACCCAGCGTTGATGCTGAAGCACTCGAAAGACGTTTAGTGGAGGAATGGGCTCCAGCAGCACGAAACATGTCCTTTGAGTTCAAGCAGAAGCTTACGGGGAAGCAATTCCTTACAGCAGCAGATGATTCAAATCCTTGGTGGGGGCTCTTGGAAAATGCTGTTAAGGAAGCCGGAGGTAGGACCAGTAAGCCTGAGATTTTCCCTGCATCAACGGATGCTCGCTACTTTCGCAAGGCTGGCGTGCCTGCCTTTGGGTTCTCTCCCATATCAAACACCCCGAGTCTGCTTCATGACCACAATGAGTATTTGGGTAAAGCTGAGTACTTGAAAGGCATTGAGGTGTATGTTTCAATCATCAAAGCTTATGCATCATATGAAAGCAAAAGTGGTTCACGAGATGAGTTATGA

Protein Analysis

430

Amino Acids

47.74

Weight (kDa)

5.93

Isoelectric Point (pI)

42.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M20 PF01546 88 - 415 2.8e-36 Peptidase family M20/M25/M40
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 149
AasI GACNNNNNNGTC 1 cut(s) 71
AbsI CCTCGAGG 1 cut(s) 401
Acc36I ACCTGC 1 cut(s) 262
AccB1I GGYRCC 1 cut(s) 656
AccBSI CCGCTC 1 cut(s) 322
AciI CCGC 4 cut(s) 50, 212, 320, 486
AclWI GGATC 1 cut(s) 441
AcoI YGGCCR 3 cut(s) 54, 487, 649
AcsI RAATTY 1 cut(s) 194
AcuI CTGAAG 2 cut(s) 786, 921
AcyI GRCGYC 1 cut(s) 66
AfaI GTAC 3 cut(s) 92, 398, 1208
AfiI CCNNNNNNNGG 5 cut(s) 229, 653, 1025, 1062, 1136
AflIII ACRYGT 1 cut(s) 951
AgsI TTSAA 7 cut(s) 436, 529, 538, 967, 1014, 1213, 1236
AjnI CCWGG 6 cut(s) 84, 359, 369, 420, 614, 646
Alw21I GWGCWC 1 cut(s) 555
Alw26I GTCTC 2 cut(s) 79, 784
AlwI GGATC 1 cut(s) 441
AlwNI CAGNNNCTG 1 cut(s) 863
Ama87I CYCGRG 2 cut(s) 401, 1162
AoxI GGCC 6 cut(s) 54, 405, 487, 562, 649, 792
ApeKI GCWGC 2 cut(s) 941, 1001
ApoI RAATTY 1 cut(s) 194
ArsI GACNNNNNNTTYG 2 cut(s) 155, 187
Asp700I GAANNNNTTC 1 cut(s) 989
AspLEI GCGC 1 cut(s) 500
AspS9I GGNCC 3 cut(s) 337, 641, 1065
AsuC2I CCSGG 1 cut(s) 122
AsuHPI GGTGA 2 cut(s) 305, 637
AvaI CYCGRG 2 cut(s) 401, 1162
AvaII GGWCC 3 cut(s) 337, 641, 1065
BalI TGGCCA 1 cut(s) 651
BanI GGYRCC 1 cut(s) 656
BanII GRGCYC 2 cut(s) 937, 1032
BauI CACGAG 1 cut(s) 1278
BbsI GAAGAC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 555
BbvI GCAGC 2 cut(s) 953, 1013
BccI CCATC 5 cut(s) 77, 324, 488, 577, 856
BceAI ACGGC 1 cut(s) 122
BcgI CGANNNNNNTGC 2 cut(s) 338, 372
BciT130I CCWGG 6 cut(s) 86, 361, 371, 422, 616, 648
BcnI CCSGG 1 cut(s) 122
BcoDI GTCTC 2 cut(s) 79, 784
BfuAI ACCTGC 1 cut(s) 262
BglI GCCNNNNNGGC 1 cut(s) 495
BisI GCNGC 4 cut(s) 212, 487, 942, 1002
BlsI GCNGC 4 cut(s) 213, 488, 943, 1003
BmcAI AGTACT 1 cut(s) 1208
Bme1390I CCNGG 7 cut(s) 86, 122, 361, 371, 422, 616, 648
Bme18I GGWCC 3 cut(s) 337, 641, 1065
BmeT110I CYCGRG 2 cut(s) 401, 1162
BmgT120I GGNCC 3 cut(s) 337, 641, 1065
BmiI GGNNCC 4 cut(s) 238, 367, 658, 936
BmrFI CCNGG 7 cut(s) 86, 122, 361, 371, 422, 616, 648
BmsI GCATC 5 cut(s) 381, 886, 1090, 1100, 1262
BpiI GAAGAC 1 cut(s) 8
BpmI CTGGAG 3 cut(s) 61, 404, 921
BpuEI CTTGAG 1 cut(s) 785
BpuMI CCSGG 1 cut(s) 122
BsaBI GATNNNNATC 1 cut(s) 1014
BsaHI GRCGYC 1 cut(s) 66
BsaJI CCNNGG 7 cut(s) 343, 360, 369, 614, 652, 681, 1019
BsaXI ACNNNNNCTCC 4 cut(s) 402, 432, 802, 832
Bsc4I CCNNNNNNNGG 5 cut(s) 229, 653, 1025, 1062, 1136
Bse118I RCCGGY 1 cut(s) 56
Bse1I ACTGG 2 cut(s) 829, 1068
Bse8I GATNNNNATC 1 cut(s) 1014
BseBI CCWGG 6 cut(s) 86, 361, 371, 422, 616, 648
BseDI CCNNGG 7 cut(s) 343, 360, 369, 614, 652, 681, 1019
BseGI GGATG 3 cut(s) 316, 396, 1105
BseJI GATNNNNATC 1 cut(s) 1014
BseLI CCNNNNNNNGG 5 cut(s) 229, 653, 1025, 1062, 1136
BseMII CTCAG 7 cut(s) 170, 197, 570, 746, 843, 1068, 1194
BseNI ACTGG 2 cut(s) 829, 1068
BseRI GAGGAG 5 cut(s) 11, 209, 212, 254, 622
BseXI GCAGC 2 cut(s) 953, 1013
BseYI CCCAGC 1 cut(s) 887
Bsh1285I CGRYCG 1 cut(s) 192
BshFI GGCC 6 cut(s) 56, 407, 489, 564, 651, 794
BshNI GGYRCC 1 cut(s) 656
BsiEI CGRYCG 1 cut(s) 192
BsiHKAI GWGCWC 1 cut(s) 555
BsiHKCI CYCGRG 2 cut(s) 401, 1162
BsiSI CCGG 3 cut(s) 57, 122, 1056
BslFI GGGAC 3 cut(s) 157, 452, 597
BslI CCNNNNNNNGG 5 cut(s) 229, 653, 1025, 1062, 1136
BsmAI GTCTC 2 cut(s) 79, 784
BsmBI CGTCTC 1 cut(s) 79
BsmFI GGGAC 3 cut(s) 157, 452, 597
BsnI GGCC 6 cut(s) 56, 407, 489, 564, 651, 794
BsoBI CYCGRG 2 cut(s) 401, 1162
Bsp1286I GDGCHC 3 cut(s) 555, 937, 1032
Bsp143I GATC 3 cut(s) 189, 446, 739
Bsp19I CCATGG 2 cut(s) 343, 681
BspACI CCGC 4 cut(s) 50, 212, 320, 486
BspANI GGCC 6 cut(s) 56, 407, 489, 564, 651, 794
BspCNI CTCAG 7 cut(s) 169, 196, 571, 745, 844, 1069, 1195
BspHI TCATGA 1 cut(s) 1174
BspLI GGNNCC 4 cut(s) 238, 367, 658, 936
BspMI ACCTGC 1 cut(s) 262
BspPI GGATC 1 cut(s) 441
BspT107I GGYRCC 1 cut(s) 656
BsrBI CCGCTC 1 cut(s) 322
BsrFI RCCGGY 1 cut(s) 56
BsrI ACTGG 2 cut(s) 829, 1068
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 7 cut(s) 343, 360, 369, 614, 652, 681, 1019
BssMI GATC 3 cut(s) 189, 446, 739
BssNI GRCGYC 1 cut(s) 66
BssSI CACGAG 1 cut(s) 1278
BssT1I CCWWGG 3 cut(s) 343, 681, 1019
Bst2BI CACGAG 1 cut(s) 1278
Bst2UI CCWGG 6 cut(s) 86, 361, 371, 422, 616, 648
Bst4CI ACNGT 3 cut(s) 109, 171, 656
Bst6I CTCTTC 1 cut(s) 471
BstACI GRCGYC 1 cut(s) 66
BstC8I GCNNGC 8 cut(s) 58, 416, 566, 808, 1105, 1123, 1127, 1131
BstDEI CTNAG 7 cut(s) 156, 183, 579, 732, 852, 1077, 1203
BstDSI CCRYGG 3 cut(s) 343, 652, 681
BstF5I GGATG 3 cut(s) 316, 396, 1105
BstHHI GCGC 1 cut(s) 500
BstKTI GATC 3 cut(s) 192, 449, 742
BstMAI GTCTC 2 cut(s) 79, 784
BstMBI GATC 3 cut(s) 189, 446, 739
BstMCI CGRYCG 1 cut(s) 192
BstMWI GCNNNNNNNGC 4 cut(s) 495, 941, 1113, 1122
BstNI CCWGG 6 cut(s) 86, 361, 371, 422, 616, 648
BstNSI RCATGY 1 cut(s) 955
BstSCI CCNGG 7 cut(s) 84, 120, 359, 369, 420, 614, 646
BstV1I GCAGC 2 cut(s) 953, 1013
BstV2I GAAGAC 1 cut(s) 8
BstXI CCANNNNNNTGG 1 cut(s) 428
BsuRI GGCC 6 cut(s) 56, 407, 489, 564, 651, 794
BtgI CCRYGG 3 cut(s) 343, 652, 681
BtgZI GCGATG 3 cut(s) 526, 555, 786
BtsCI GGATG 3 cut(s) 316, 396, 1105
BtsIMutI CAGTG 1 cut(s) 167
BveI ACCTGC 1 cut(s) 262
Cac8I GCNNGC 8 cut(s) 58, 416, 566, 808, 1105, 1123, 1127, 1131
CaiI CAGNNNCTG 1 cut(s) 863
CciI TCATGA 1 cut(s) 1174
CfoI GCGC 1 cut(s) 500
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 3 cut(s) 337, 641, 1065
CseI GACGC 2 cut(s) 74, 373
Csp6I GTAC 3 cut(s) 91, 397, 1207
CspCI CAANNNNNGTGG 2 cut(s) 736, 771
CviAII CATG 7 cut(s) 334, 344, 376, 682, 790, 952, 1175
CviQI GTAC 3 cut(s) 91, 397, 1207
DdeI CTNAG 7 cut(s) 156, 183, 579, 732, 852, 1077, 1203
DpnI GATC 3 cut(s) 191, 448, 741
DpnII GATC 3 cut(s) 189, 446, 739
DrdI GACNNNNNNGTC 1 cut(s) 71
DseDI GACNNNNNNGTC 1 cut(s) 71
EaeI YGGCCR 3 cut(s) 54, 487, 649
Eam1104I CTCTTC 1 cut(s) 471
EarI CTCTTC 1 cut(s) 471
Eco130I CCWWGG 3 cut(s) 343, 681, 1019
Eco147I AGGCCT 1 cut(s) 564
Eco24I GRGCYC 2 cut(s) 937, 1032
Eco47I GGWCC 3 cut(s) 337, 641, 1065
Eco57I CTGAAG 2 cut(s) 786, 921
Eco88I CYCGRG 2 cut(s) 401, 1162
EcoRII CCWGG 6 cut(s) 84, 359, 369, 420, 614, 646
EcoT14I CCWWGG 3 cut(s) 343, 681, 1019
EcoT22I ATGCAT 1 cut(s) 1255
EcoT38I GRGCYC 2 cut(s) 937, 1032
ErhI CCWWGG 3 cut(s) 343, 681, 1019
Esp3I CGTCTC 1 cut(s) 79
FaeI CATG 7 cut(s) 337, 347, 379, 685, 793, 955, 1178
FaqI GGGAC 3 cut(s) 157, 452, 597
FatI CATG 7 cut(s) 333, 343, 375, 681, 789, 951, 1174
FauNDI CATATG 1 cut(s) 1258
Fnu4HI GCNGC 4 cut(s) 212, 487, 942, 1002
FokI GGATG 3 cut(s) 303, 403, 1112
FriOI GRGCYC 2 cut(s) 937, 1032
Fsp4HI GCNGC 4 cut(s) 212, 487, 942, 1002
GlaI GCGC 1 cut(s) 499
GluI GCNGC 4 cut(s) 212, 487, 942, 1002
GsaI CCCAGC 1 cut(s) 891
GsuI CTGGAG 3 cut(s) 61, 404, 921
HaeIII GGCC 6 cut(s) 56, 407, 489, 564, 651, 794
HapII CCGG 3 cut(s) 57, 122, 1056
HgaI GACGC 2 cut(s) 74, 373
HhaI GCGC 1 cut(s) 500
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 7 cut(s) 337, 347, 379, 685, 793, 955, 1178
Hin6I GCGC 1 cut(s) 498
HinP1I GCGC 1 cut(s) 498
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HindIII AAGCTT 2 cut(s) 974, 1245
HpaII CCGG 3 cut(s) 57, 122, 1056
HphI GGTGA 2 cut(s) 305, 637
Hpy166II GTNNAC 5 cut(s) 142, 309, 644, 787, 1277
Hpy188I TCNGA 6 cut(s) 98, 186, 241, 446, 725, 853
Hpy188III TCNNGA 5 cut(s) 78, 388, 529, 1175, 1278
Hpy8I GTNNAC 5 cut(s) 142, 309, 644, 787, 1277
Hpy99I CGWCG 4 cut(s) 65, 68, 389, 560
HpyAV CCTTC 6 cut(s) 301, 472, 554, 761, 805, 825
HpyCH4III ACNGT 3 cut(s) 109, 171, 656
HpyCH4IV ACGT 1 cut(s) 916
HpyCH4V TGCA 4 cut(s) 394, 844, 1091, 1253
HpyF10VI GCNNNNNNNGC 4 cut(s) 495, 941, 1113, 1122
HpyF3I CTNAG 7 cut(s) 156, 183, 579, 732, 852, 1077, 1203
HpySE526I ACGT 1 cut(s) 916
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 7 cut(s) 337, 347, 379, 685, 793, 955, 1178
HspAI GCGC 1 cut(s) 498
KroI GCCGGC 1 cut(s) 56
KroNI GCCGGC 1 cut(s) 58
Kzo9I GATC 3 cut(s) 189, 446, 739
LmnI GCTCC 4 cut(s) 242, 327, 423, 940
Lsp1109I GCAGC 2 cut(s) 953, 1013
LweI GCATC 5 cut(s) 381, 886, 1090, 1100, 1262
MaeII ACGT 1 cut(s) 916
MaeIII GTNAC 1 cut(s) 584
MalI GATC 3 cut(s) 191, 448, 741
MbiI CCGCTC 1 cut(s) 322
MboI GATC 3 cut(s) 189, 446, 739
MboII GAAGA 4 cut(s) 8, 29, 488, 734
MhlI GDGCHC 3 cut(s) 555, 937, 1032
MlsI TGGCCA 1 cut(s) 651
MluCI AATT 3 cut(s) 194, 521, 989
MluNI TGGCCA 1 cut(s) 651
MlyI GAGTC 5 cut(s) 13, 293, 304, 619, 1174
MmeI TCCRAC 2 cut(s) 264, 845
Mox20I TGGCCA 1 cut(s) 651
Mph1103I ATGCAT 1 cut(s) 1255
MroNI GCCGGC 1 cut(s) 56
MroXI GAANNNNTTC 1 cut(s) 989
MscI TGGCCA 1 cut(s) 651
MseI TTAA 2 cut(s) 630, 1047
MslI CAYNNNNRTG 2 cut(s) 279, 1223
Msp20I TGGCCA 1 cut(s) 651
MspI CCGG 3 cut(s) 57, 122, 1056
MspR9I CCNGG 7 cut(s) 86, 122, 361, 371, 422, 616, 648
MvaI CCWGG 6 cut(s) 86, 361, 371, 422, 616, 648
MwoI GCNNNNNNNGC 4 cut(s) 495, 941, 1113, 1122
NaeI GCCGGC 1 cut(s) 58
NciI CCSGG 1 cut(s) 122
NcoI CCATGG 2 cut(s) 343, 681
NdeI CATATG 1 cut(s) 1258
NdeII GATC 3 cut(s) 189, 446, 739
NgoMIV GCCGGC 1 cut(s) 56
NlaIII CATG 7 cut(s) 337, 347, 379, 685, 793, 955, 1178
NlaIV GGNNCC 4 cut(s) 238, 367, 658, 936
NsiI ATGCAT 1 cut(s) 1255
NspI RCATGY 1 cut(s) 955
PaeR7I CTCGAG 1 cut(s) 401
PagI TCATGA 1 cut(s) 1174
PceI AGGCCT 1 cut(s) 564
PciI ACATGT 1 cut(s) 951
PcsI WCGNNNNNNNCGW 3 cut(s) 69, 291, 555
PdiI GCCGGC 1 cut(s) 58
PdmI GAANNNNTTC 1 cut(s) 989
PfeI GAWTC 8 cut(s) 81, 99, 179, 515, 688, 720, 838, 1010
PfoI TCCNGGA 1 cut(s) 84
PkrI GCNGC 4 cut(s) 213, 488, 943, 1003
Ple19I CGATCG 1 cut(s) 192
PleI GAGTC 5 cut(s) 12, 293, 304, 618, 1173
PpsI GAGTC 5 cut(s) 12, 293, 304, 618, 1173
PscI ACATGT 1 cut(s) 951
PsiI TTATAA 1 cut(s) 149
Psp6I CCWGG 6 cut(s) 84, 359, 369, 420, 614, 646
PspFI CCCAGC 1 cut(s) 887
PspGI CCWGG 6 cut(s) 84, 359, 369, 420, 614, 646
PspN4I GGNNCC 4 cut(s) 238, 367, 658, 936
PspPI GGNCC 3 cut(s) 337, 641, 1065
PspXI VCTCGAGB 1 cut(s) 401
PstNI CAGNNNCTG 1 cut(s) 863
PvuI CGATCG 1 cut(s) 192
RsaI GTAC 3 cut(s) 92, 398, 1208
RsaNI GTAC 3 cut(s) 91, 397, 1207
RseI CAYNNNNRTG 2 cut(s) 279, 1223
SaqAI TTAA 2 cut(s) 630, 1047
SatI GCNGC 4 cut(s) 212, 487, 942, 1002
Sau3AI GATC 3 cut(s) 189, 446, 739
Sau96I GGNCC 3 cut(s) 337, 641, 1065
ScaI AGTACT 1 cut(s) 1208
SchI GAGTC 5 cut(s) 13, 293, 304, 619, 1174
ScrFI CCNGG 7 cut(s) 86, 122, 361, 371, 422, 616, 648
SduI GDGCHC 3 cut(s) 555, 937, 1032
SfaNI GCATC 5 cut(s) 381, 886, 1090, 1100, 1262
Sfr274I CTCGAG 1 cut(s) 401
SinI GGWCC 3 cut(s) 337, 641, 1065
SlaI CTCGAG 1 cut(s) 401
SmiMI CAYNNNNRTG 2 cut(s) 279, 1223
SmlI CTYRAG 2 cut(s) 401, 800
SmoI CTYRAG 2 cut(s) 401, 800
Sse9I AATT 3 cut(s) 194, 521, 989
SseBI AGGCCT 1 cut(s) 564
SsiI CCGC 4 cut(s) 50, 212, 320, 486
StuI AGGCCT 1 cut(s) 564
StyD4I CCNGG 7 cut(s) 84, 120, 359, 369, 420, 614, 646
StyI CCWWGG 3 cut(s) 343, 681, 1019
TaaI ACNGT 3 cut(s) 109, 171, 656
TaiI ACGT 1 cut(s) 919
TaqI TCGA 8 cut(s) 177, 192, 294, 402, 555, 738, 870, 909
TasI AATT 3 cut(s) 194, 521, 989
TatI WGTACW 1 cut(s) 1206
TauI GCSGC 2 cut(s) 214, 489
TfiI GAWTC 8 cut(s) 81, 99, 179, 515, 688, 720, 838, 1010
Tru1I TTAA 2 cut(s) 630, 1047
Tru9I TTAA 2 cut(s) 630, 1047
TscAI CASTG 1 cut(s) 174
TseI GCWGC 2 cut(s) 941, 1001
TspDTI ATGAA 6 cut(s) 29, 392, 489, 851, 1163, 1275
TspGWI ACGGA 2 cut(s) 439, 1112
TspRI CASTG 1 cut(s) 174
VpaK11BI GGWCC 3 cut(s) 337, 641, 1065
XapI RAATTY 1 cut(s) 194
XceI RCATGY 1 cut(s) 955
XhoI CTCGAG 1 cut(s) 401
XmnI GAANNNNTTC 1 cut(s) 989
ZrmI AGTACT 1 cut(s) 1208
Zsp2I ATGCAT 1 cut(s) 1255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.