Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012209.1

Orthogroup ID

OG0004417

Physical Location & Seq

Genomic Coordinates Reverse (-)

100 .. 435

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012209.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ctggcccggctccgacccgacccttccctcctcctaaactcctacctcgacttcgtccccgtcgagccctccaagtgggcccacccgccattctcagcccaccacacccccgaaggccagatcttcgcccgcagctcccaagacgacaagtgcatcgccatccagtacctcgaggccatccgcaacctcaaagccgcaggcttcaacccaatccgcaccgtccacgtgtcctacgtccccaacgaggagatcggcggcctcgacggcgccgccaagttcaccatctctgacaagttcaaggaactgaaggtcgggtttgttttggatgagggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004046 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0016787 GO:0016810 GO:0016811 GO:0031982 GO:0042802 GO:0043226 GO:0043227 GO:0043230 GO:0044421 GO:0070062 GO:1903561

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

111

Amino Acids

12.32

Weight (kDa)

6.07

Isoelectric Point (pI)

32.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38220 AT4G38220
fragaria_vesca	FvH4_2g16990
malus_domestica	MD05G1143000.v1.1 MD10G1142800.v1.1 MD15G1413100.v1.1
prunus_persica	Prupe.8G181800_v2.0.a1 Prupe.8G181800_v2.0.a1
pyrus_communis	pycom05g13750 pycom10g12270
rosa_chinensis	RchiOBHm_Chr2g0126171 RchiOBHm_Chr6g0281181
rosa_laevigata	RLG00000012987
rosa_multiflora	Rmu_co8196198.1_g000001 Rmu_co8363365.1_g000001 Rmu_sc0001705.1_g000022 Rmu_sc0012209.1_g000001 Rmu_sc0026953.1_g000001 Rmu_sc0034918.1_g000001 Rmu_sc0035650.1_g000001
rosa_rugosa	Rorug06G0139500 Rorug06G0139500
rosa_samantha	Rh2BG327100 Rh6AG251300 Rh6BG182200 Rh6BG254500 Rh6CG253900 Rh6DG246000
rosa_wichuraiana	Rw2G031780 Rw3G017710 Rw6G021830 Rw7G031480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	170
AccB1I	GGYRCC	1 cut(s)	266
AciI	CCGC	7 cut(s)	86, 130, 181, 195, 214, 255, 270
AcuI	CTGAAG	1 cut(s)	326
AcvI	CACGTG	1 cut(s)	226
AcyI	GRCGYC	1 cut(s)	267
AfaI	GTAC	1 cut(s)	167
AfiI	CCNNNNNNNGG	2 cut(s)	75, 244
AflIII	ACRYGT	1 cut(s)	225
AgsI	TTSAA	2 cut(s)	205, 298
AluBI	AGCT	1 cut(s)	135
AluI	AGCT	1 cut(s)	135
Ama87I	CYCGRG	1 cut(s)	170
AoxI	GGCC	5 cut(s)	3, 78, 115, 174, 256
ApaI	GGGCCC	1 cut(s)	82
ApeKI	GCWGC	1 cut(s)	132
AspLEI	GCGC	1 cut(s)	269
AspS9I	GGNCC	3 cut(s)	4, 78, 79
AsuC2I	CCSGG	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	271
AvaI	CYCGRG	1 cut(s)	170
BaeGI	GKGCMC	1 cut(s)	82
BanI	GGYRCC	1 cut(s)	266
BanII	GRGCYC	2 cut(s)	69, 82
BbrPI	CACGTG	1 cut(s)	226
BbvI	GCAGC	1 cut(s)	144
BccI	CCATC	3 cut(s)	167, 185, 290
BceAI	ACGGC	1 cut(s)	280
BcnI	CCSGG	1 cut(s)	7
BfoI	RGCGCY	1 cut(s)	270
BglI	GCCNNNNNGGC	1 cut(s)	264
BglII	AGATCT	1 cut(s)	120
BisI	GCNGC	4 cut(s)	133, 195, 256, 270
BlsI	GCNGC	4 cut(s)	134, 196, 257, 271
Bme1390I	CCNGG	1 cut(s)	7
BmeT110I	CYCGRG	1 cut(s)	170
BmgT120I	GGNCC	3 cut(s)	4, 78, 79
BmiI	GGNNCC	3 cut(s)	11, 80, 268
BmrFI	CCNGG	1 cut(s)	7
BmsI	GCATC	1 cut(s)	162
BpuMI	CCSGG	1 cut(s)	7
BsaAI	YACGTR	1 cut(s)	226
BsaHI	GRCGYC	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 244
Bse1I	ACTGG	1 cut(s)	163
BseGI	GGATG	3 cut(s)	159, 177, 331
BseLI	CCNNNNNNNGG	2 cut(s)	75, 244
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	1 cut(s)	163
BseRI	GAGGAG	2 cut(s)	20, 260
BseSI	GKGCMC	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	144
BshFI	GGCC	5 cut(s)	5, 80, 117, 176, 258
BshNI	GGYRCC	1 cut(s)	266
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	7
BslFI	GGGAC	2 cut(s)	41, 221
BslI	CCNNNNNNNGG	2 cut(s)	75, 244
BsmFI	GGGAC	2 cut(s)	41, 221
BsnI	GGCC	5 cut(s)	5, 80, 117, 176, 258
BsoBI	CYCGRG	1 cut(s)	170
Bsp120I	GGGCCC	1 cut(s)	78
Bsp1286I	GDGCHC	2 cut(s)	69, 82
Bsp143I	GATC	2 cut(s)	120, 249
BspACI	CCGC	7 cut(s)	86, 130, 181, 195, 214, 255, 270
BspANI	GGCC	5 cut(s)	5, 80, 117, 176, 258
BspCNI	CTCAG	1 cut(s)	107
BspLI	GGNNCC	3 cut(s)	11, 80, 268
BspT107I	GGYRCC	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	163
BssMI	GATC	2 cut(s)	120, 249
BssNI	GRCGYC	1 cut(s)	267
Bst4CI	ACNGT	1 cut(s)	220
BstACI	GRCGYC	1 cut(s)	267
BstBAI	YACGTR	1 cut(s)	226
BstC8I	GCNNGC	2 cut(s)	130, 199
BstDEI	CTNAG	1 cut(s)	94
BstF5I	GGATG	3 cut(s)	159, 177, 331
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	2 cut(s)	123, 252
BstMBI	GATC	2 cut(s)	120, 249
BstMWI	GCNNNNNNNGC	1 cut(s)	264
BstSCI	CCNGG	1 cut(s)	5
BstSLI	GKGCMC	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	144
BstX2I	RGATCY	1 cut(s)	120
BstYI	RGATCY	1 cut(s)	120
BsuRI	GGCC	5 cut(s)	5, 80, 117, 176, 258
BtgZI	GCGATG	1 cut(s)	139
BtsCI	GGATG	3 cut(s)	159, 177, 331
Cac8I	GCNNGC	2 cut(s)	130, 199
CfoI	GCGC	1 cut(s)	269
Cfr13I	GGNCC	3 cut(s)	4, 78, 79
Csp6I	GTAC	1 cut(s)	166
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	1 cut(s)	94
DinI	GGCGCC	1 cut(s)	268
DpnI	GATC	2 cut(s)	122, 251
DpnII	GATC	2 cut(s)	120, 249
Eco24I	GRGCYC	2 cut(s)	69, 82
Eco57I	CTGAAG	1 cut(s)	326
Eco72I	CACGTG	1 cut(s)	226
Eco88I	CYCGRG	1 cut(s)	170
EcoT38I	GRGCYC	2 cut(s)	69, 82
EgeI	GGCGCC	1 cut(s)	268
EheI	GGCGCC	1 cut(s)	268
FaqI	GGGAC	2 cut(s)	41, 221
FauI	CCCGC	2 cut(s)	93, 137
Fnu4HI	GCNGC	4 cut(s)	133, 195, 256, 270
FokI	GGATG	2 cut(s)	146, 164
FriOI	GRGCYC	2 cut(s)	69, 82
Fsp4HI	GCNGC	4 cut(s)	133, 195, 256, 270
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	4 cut(s)	133, 195, 256, 270
HaeII	RGCGCY	1 cut(s)	270
HaeIII	GGCC	5 cut(s)	5, 80, 117, 176, 258
HapII	CCGG	1 cut(s)	7
HhaI	GCGC	1 cut(s)	269
Hin1I	GRCGYC	1 cut(s)	267
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HpaII	CCGG	1 cut(s)	7
HphI	GGTGA	1 cut(s)	271
Hpy166II	GTNNAC	2 cut(s)	223, 279
Hpy188I	TCNGA	2 cut(s)	14, 289
Hpy8I	GTNNAC	2 cut(s)	223, 279
Hpy99I	CGWCG	2 cut(s)	65, 266
HpyAV	CCTTC	3 cut(s)	33, 107, 301
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4IV	ACGT	2 cut(s)	225, 234
HpyCH4V	TGCA	1 cut(s)	153
HpyF10VI	GCNNNNNNNGC	1 cut(s)	264
HpyF3I	CTNAG	1 cut(s)	94
HpySE526I	ACGT	2 cut(s)	225, 234
Hsp92I	GRCGYC	1 cut(s)	267
HspAI	GCGC	1 cut(s)	267
KasI	GGCGCC	1 cut(s)	266
Kzo9I	GATC	2 cut(s)	120, 249
LmnI	GCTCC	2 cut(s)	15, 140
LpnPI	CCDG	4 cut(s)	20, 131, 176, 183
Lsp1109I	GCAGC	1 cut(s)	144
LweI	GCATC	1 cut(s)	162
MaeII	ACGT	2 cut(s)	225, 234
MalI	GATC	2 cut(s)	122, 251
MboI	GATC	2 cut(s)	120, 249
MboII	GAAGA	1 cut(s)	115
MflI	RGATCY	1 cut(s)	120
MhlI	GDGCHC	2 cut(s)	69, 82
Mly113I	GGCGCC	1 cut(s)	267
MmeI	TCCRAC	1 cut(s)	37
MspI	CCGG	1 cut(s)	7
MspR9I	CCNGG	1 cut(s)	7
MwoI	GCNNNNNNNGC	1 cut(s)	264
NarI	GGCGCC	1 cut(s)	267
NciI	CCSGG	1 cut(s)	7
NdeII	GATC	2 cut(s)	120, 249
NlaIV	GGNNCC	3 cut(s)	11, 80, 268
PaeR7I	CTCGAG	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	4 cut(s)	60, 231, 240, 258
PflFI	GACNNNGTC	1 cut(s)	53
PkrI	GCNGC	4 cut(s)	134, 196, 257, 271
PluTI	GGCGCC	1 cut(s)	270
PmaCI	CACGTG	1 cut(s)	226
PmlI	CACGTG	1 cut(s)	226
Ppu21I	YACGTR	1 cut(s)	226
PspCI	CACGTG	1 cut(s)	226
PspN4I	GGNNCC	3 cut(s)	11, 80, 268
PspOMI	GGGCCC	1 cut(s)	78
PspPI	GGNCC	3 cut(s)	4, 78, 79
PspXI	VCTCGAGB	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	120
PsyI	GACNNNGTC	1 cut(s)	53
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
SatI	GCNGC	4 cut(s)	133, 195, 256, 270
Sau3AI	GATC	2 cut(s)	120, 249
Sau96I	GGNCC	3 cut(s)	4, 78, 79
ScrFI	CCNGG	1 cut(s)	7
SduI	GDGCHC	2 cut(s)	69, 82
SetI	ASST	7 cut(s)	48, 137, 171, 189, 228, 237, 312
SfaNI	GCATC	1 cut(s)	162
SfoI	GGCGCC	1 cut(s)	268
Sfr274I	CTCGAG	1 cut(s)	170
SlaI	CTCGAG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
SsiI	CCGC	7 cut(s)	86, 130, 181, 195, 214, 255, 270
SspDI	GGCGCC	1 cut(s)	266
StyD4I	CCNGG	1 cut(s)	5
TaaI	ACNGT	1 cut(s)	220
TaiI	ACGT	2 cut(s)	228, 237
TaqI	TCGA	4 cut(s)	48, 63, 171, 261
TauI	GCSGC	3 cut(s)	197, 258, 272
TseI	GCWGC	1 cut(s)	132
Tth111I	GACNNNGTC	1 cut(s)	53
XhoI	CTCGAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.