Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0016566

Physical Location & Seq

Genomic Coordinates Forward (+)

27237371 .. 27239185

Gene Structure 1815 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1142000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1815 bp

ATGCAAAGAGTAGCGTTCTCCCTTCGTGTTCCCTGTTCTCACTCTGTTCTCAGCATGAGAGCCATCCCTGTCTCCAAGTTGAAATGCAAAGCACTGCAACCATTTTCACGTCCTTGCTCTCACATGCCCAACGTGGCAGAATCACCACCCTCCACTCTGGTCCAACAGTTCACCAAATTCTGCTACCAGAGAGACCTCCCGAGAGCCATGATAGCCATGGAAGCCATGCAAAGGCGCGGACTTTGGGCCGACTCCGTCGTCTACTCCGAGCTCGTCAAGTGCTGCTTGGCTCGGCGAGCTGTTCAGCAGGGTAAGCTCGTCCACAAACACGTTTTCTCAAATGGGTACCAGCCCAAGACCTTCTTAATCAACGTTTTCATCAACATGTACGTTAAATTTGCTCTCTTGGAGGAAGCGCAGGAACTGTTCGACGAAATGCCTGAGCGAAACGTTGTTTCCTGGACGACTATGATATCGGCATACTCGAATGTCAAATTCAACCGCAAGGCCTTGGAGTTTTTGGTTTTGATGCTTAGAGAAGGTGTTTCGCCTAACCGTTTCACGTATTCTTCGGTTTTGAGAGCTTGCAATGGGTTGTCAAATCTCAAGCAGCTTCATTGTTGTATTTTTAAAGCTGGGTTGGAATCTGACGTCTTTGTTCGGAGTGCTCTCATTGACGTTTACTCGAAATTGGGTGAGTTGCATAATGCGCGGGGCGTTTTCAATGAAATGGTGTCCGGAGATTTGGTCGTTTGGAACTCTATCATTGGAGCGTTTGCTCAGAACAGCGATGGTGATGAGGCTCTGAACCTTTTCAAGAGGATGAAAAGGGCTGGTTTTTCAGCTGAAGAGGCCACGCTAACGAGCGTTTTGAGAGCTTGCACGGTGTTGGTGCTTTTAGAATTGGGAAGGCAGGTTCATGTTCATGCTGTGAAGTATGGTCAAGATCTAATTCTGAACAATGCACTTCTAGATATGTATTGCAAGTGTGGGAGTTTGGAAGATGCAAACACTGTTTTTACCAGGATGGAGAAGAAGGATGTAATCTCTTGGAGCACCATGATTGCAGGGCTAGCGCAAAATGGTTTCAGCCAAGAGGCCCTGAGATTGTTCGAGCAGATGAAAGTTTCCGGGGTGAAACCAAATTACATCACACTTCTTGGGGTTCTGTTTGCTTGTAGTCATGCTGGGCTTTTAGAAGATGGGTGGTACTACTTCCAGAATATGAAGCAGCTTTTTGGAATTGATCCTGGAAGAGAGCACTATGGTTGCGTAATTGATCTTCTTGGAAGGGCAGGGAAACTTGATGAGGCAGCAAGGCTAATACAAGAAATGGAAGGTGAACCAGATGCAGTGACATGGAGGACGTTGCTTGGCGCCTGCAGGGTTCACCGGAATGTAGATCTAGCAGCATATGCTGCCAAGCAAATTCTTAAAACGGACCCTGATGATGCCGGAACCTACATTTTACTATCGAACATATATGCCAATTCTCAGAGATGGGAAGATGTGACTGAAGTAAGAAAGAGCATGAAAGCTAGAGGGGTTACTAAAGAACCCGGGTGCAGTTGGATTGAAGTGAACAAACAGATTCATGCTTTTATCTTGGGAGATGACTCACATCCACAAATAGACGAGATCAATAGGCAGCTGAGCTTGTTGATTGATAGACTAATGGCAGTGGGTTACATTCCTGACACGAATTTTGTTTTGCAAGATCTTGAGGGAGAACAGAGGGAAGTTTCACTTCTATCCCACAGCGAGAAATTGGCGATTGTCTTTGGTTTAATGAGCTTGTCAAAGGGGAAGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

605

Amino Acids

67.9

Weight (kDa)

8.23

Isoelectric Point (pI)

37.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	149 - 196	4.9e-11	PPR repeat family
PPR_3	PF13812	149 - 196	3.2e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	248 - 294	7.8e-09	PPR repeat family
PPR	PF01535	250 - 280	9.1e-08	PPR repeat
PPR_2	PF13041	346 - 386	4.9e-09	PPR repeat family
PPR	PF01535	349 - 379	8.8e-08	PPR repeat
E_motif	PF20431	464 - 526	1.1e-22	E motif
DYW_deaminase	PF14432	562 - 603	3e-07	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03880
fragaria_vesca	FvH4_2g16980
malus_domestica	MD05G1142000.v1.1 MD05G1142900.v1.1
prunus_persica	Prupe.8G181700_v2.0.a1
pyrus_communis	pycom05g13740
rosa_chinensis	RchiOBHm_Chr6g0281171
rosa_laevigata	RLG00000012988
rosa_multiflora	Rmu_sc0001705.1_g000021 Rmu_sc0035650.1_g000002
rosa_roxburghii	Rroxscaffold_7G00187240
rosa_rugosa	Rorug06G0139500
rosa_samantha	Rh6DG245900
rosa_wichuraiana	Rw6G021820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	257
AatII	GACGTC	1 cut(s)	654
Acc36I	ACCTGC	1 cut(s)	904
Acc65I	GGTACC	1 cut(s)	345
AccB1I	GGYRCC	2 cut(s)	345, 1376
AccI	GTMKAC	1 cut(s)	261
AccII	CGCG	2 cut(s)	237, 712
AccIII	TCCGGA	1 cut(s)	737
AciI	CCGC	3 cut(s)	237, 502, 712
AclI	AACGTT	2 cut(s)	372, 450
AclWI	GGATC	1 cut(s)	1241
AcsI	RAATTY	5 cut(s)	176, 395, 494, 1428, 1702
AcuI	CTGAAG	2 cut(s)	867, 1536
AcyI	GRCGYC	2 cut(s)	651, 1377
AfaI	GTAC	3 cut(s)	347, 389, 1211
AfiI	CCNNNNNNNGG	1 cut(s)	231
AflIII	ACRYGT	2 cut(s)	328, 384
AgsI	TTSAA	5 cut(s)	82, 499, 724, 817, 1577
AjiI	CACGTC	1 cut(s)	110
AjnI	CCWGG	3 cut(s)	458, 1022, 1249
AloI	GAACNNNNNNTCC	2 cut(s)	900, 932
Alw21I	GWGCWC	4 cut(s)	273, 670, 1058, 1263
Alw26I	GTCTC	2 cut(s)	76, 186
AlwI	GGATC	1 cut(s)	1241
AlwNI	CAGNNNCTG	1 cut(s)	424
Ama87I	CYCGRG	2 cut(s)	199, 1559
Aor13HI	TCCGGA	1 cut(s)	737
AoxI	GGCC	4 cut(s)	246, 507, 852, 1098
ApeKI	GCWGC	7 cut(s)	282, 610, 1231, 1313, 1409, 1418, 1648
ApoI	RAATTY	5 cut(s)	176, 395, 494, 1428, 1702
ArsI	GACNNNNNNTTYG	2 cut(s)	1688, 1720
Asp700I	GAANNNNTTC	1 cut(s)	812
Asp718I	GGTACC	1 cut(s)	345
AspLEI	GCGC	5 cut(s)	237, 418, 712, 1078, 1379
AspS9I	GGNCC	4 cut(s)	160, 246, 1099, 1441
AsuC2I	CCSGG	3 cut(s)	1132, 1560, 1561
AsuHPI	GGTGA	7 cut(s)	135, 163, 707, 806, 1147, 1352, 1382
AsuNHI	GCTAGC	1 cut(s)	1072
AvaI	CYCGRG	2 cut(s)	199, 1559
AvaII	GGWCC	2 cut(s)	160, 1441
BanI	GGYRCC	2 cut(s)	345, 1376
BanII	GRGCYC	1 cut(s)	273
BarI	GAAGNNNNNNTAC	2 cut(s)	1266, 1298
Bbv12I	GWGCWC	4 cut(s)	273, 670, 1058, 1263
BbvI	GCAGC	7 cut(s)	269, 622, 1243, 1325, 1405, 1421, 1660
BccI	CCATC	5 cut(s)	71, 785, 1021, 1196, 1494
BciT130I	CCWGG	3 cut(s)	460, 1024, 1251
BcnI	CCSGG	3 cut(s)	1132, 1560, 1561
BcoDI	GTCTC	2 cut(s)	76, 186
BfaI	CTAG	4 cut(s)	971, 1073, 1406, 1539
BfmI	CTRYAG	1 cut(s)	1381
BfoI	RGCGCY	1 cut(s)	1380
BfuAI	ACCTGC	1 cut(s)	904
BglII	AGATCT	3 cut(s)	946, 1402, 1717
BisI	GCNGC	7 cut(s)	283, 611, 1232, 1314, 1410, 1419, 1649
BlpI	GCTNAGC	1 cut(s)	1652
BlsI	GCNGC	7 cut(s)	284, 612, 1233, 1315, 1411, 1420, 1650
Bme1390I	CCNGG	6 cut(s)	460, 1024, 1132, 1251, 1560, 1561
Bme18I	GGWCC	2 cut(s)	160, 1441
BmeT110I	CYCGRG	2 cut(s)	199, 1559
BmgBI	CACGTC	1 cut(s)	110
BmgT120I	GGNCC	4 cut(s)	160, 246, 1099, 1441
BmiI	GGNNCC	4 cut(s)	347, 1378, 1443, 1459
BmrFI	CCNGG	6 cut(s)	460, 1024, 1132, 1251, 1560, 1561
BmsI	GCATC	4 cut(s)	519, 994, 1339, 1441
BmtI	GCTAGC	1 cut(s)	1076
Bpu10I	CCTNAGC	1 cut(s)	441
Bpu1102I	GCTNAGC	1 cut(s)	1652
BpuEI	CTTGAG	2 cut(s)	590, 1742
BpuMI	CCSGG	3 cut(s)	1132, 1560, 1561
BsaAI	YACGTR	1 cut(s)	564
BsaHI	GRCGYC	2 cut(s)	651, 1377
BsaI	GGTCTC	1 cut(s)	186
BsaJI	CCNNGG	4 cut(s)	216, 510, 1131, 1559
BsaWI	WCCGGW	2 cut(s)	737, 1392
BsaXI	ACNNNNNCTCC	2 cut(s)	732, 762
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse3DI	GCAATG	1 cut(s)	595
BseAI	TCCGGA	1 cut(s)	737
BseBI	CCWGG	3 cut(s)	460, 1024, 1251
BseDI	CCNNGG	4 cut(s)	216, 510, 1131, 1559
BseGI	GGATG	5 cut(s)	63, 828, 1032, 1045, 1621
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseMI	GCAATG	1 cut(s)	595
BseMII	CTCAG	6 cut(s)	64, 432, 794, 1094, 1508, 1643
BseXI	GCAGC	7 cut(s)	269, 622, 1243, 1325, 1405, 1421, 1660
BseYI	CCCAGC	2 cut(s)	635, 1187
BsgI	GTGCAG	1 cut(s)	1585
Bsh1236I	CGCG	2 cut(s)	237, 712
BshFI	GGCC	4 cut(s)	248, 509, 854, 1100
BshNI	GGYRCC	2 cut(s)	345, 1376
BsiHKAI	GWGCWC	4 cut(s)	273, 670, 1058, 1263
BsiHKCI	CYCGRG	2 cut(s)	199, 1559
BsiSI	CCGG	5 cut(s)	738, 1131, 1393, 1455, 1560
BslI	CCNNNNNNNGG	1 cut(s)	231
BsmAI	GTCTC	2 cut(s)	76, 186
BsnI	GGCC	4 cut(s)	248, 509, 854, 1100
Bso31I	GGTCTC	1 cut(s)	186
BsoBI	CYCGRG	2 cut(s)	199, 1559
Bsp1286I	GDGCHC	4 cut(s)	273, 670, 1058, 1263
Bsp13I	TCCGGA	1 cut(s)	737
Bsp143I	GATC	6 cut(s)	946, 1246, 1279, 1402, 1638, 1717
Bsp1720I	GCTNAGC	1 cut(s)	1652
Bsp19I	CCATGG	1 cut(s)	216
BspACI	CCGC	3 cut(s)	237, 502, 712
BspANI	GGCC	4 cut(s)	248, 509, 854, 1100
BspCNI	CTCAG	6 cut(s)	63, 433, 793, 1095, 1507, 1644
BspEI	TCCGGA	1 cut(s)	737
BspFNI	CGCG	2 cut(s)	237, 712
BspLI	GGNNCC	4 cut(s)	347, 1378, 1443, 1459
BspMAI	CTGCAG	1 cut(s)	1385
BspMI	ACCTGC	1 cut(s)	904
BspOI	GCTAGC	1 cut(s)	1076
BspPI	GGATC	1 cut(s)	1241
BspT107I	GGYRCC	2 cut(s)	345, 1376
BspTNI	GGTCTC	1 cut(s)	186
BsrDI	GCAATG	1 cut(s)	595
BssECI	CCNNGG	4 cut(s)	216, 510, 1131, 1559
BssMI	GATC	6 cut(s)	946, 1246, 1279, 1402, 1638, 1717
BssNI	GRCGYC	2 cut(s)	651, 1377
BssT1I	CCWWGG	2 cut(s)	216, 510
Bst2UI	CCWGG	3 cut(s)	460, 1024, 1251
Bst4CI	ACNGT	5 cut(s)	168, 426, 557, 886, 1015
Bst6I	CTCTTC	2 cut(s)	843, 1249
BstACI	GRCGYC	2 cut(s)	651, 1377
BstAPI	GCANNNNNTGC	2 cut(s)	1415, 1418
BstBAI	YACGTR	1 cut(s)	564
BstC8I	GCNNGC	5 cut(s)	297, 586, 880, 1074, 1381
BstDEI	CTNAG	8 cut(s)	50, 441, 533, 780, 1103, 1494, 1652, 1812
BstDSI	CCRYGG	1 cut(s)	216
BstF5I	GGATG	5 cut(s)	63, 828, 1032, 1045, 1621
BstFNI	CGCG	2 cut(s)	237, 712
BstH2I	RGCGCY	1 cut(s)	1380
BstHHI	GCGC	5 cut(s)	237, 418, 712, 1078, 1379
BstKTI	GATC	6 cut(s)	949, 1249, 1282, 1405, 1641, 1720
BstMAI	GTCTC	2 cut(s)	76, 186
BstMBI	GATC	6 cut(s)	946, 1246, 1279, 1402, 1638, 1717
BstMWI	GCNNNNNNNGC	9 cut(s)	212, 221, 296, 313, 709, 851, 1073, 1415, 1418
BstNI	CCWGG	3 cut(s)	460, 1024, 1251
BstNSI	RCATGY	2 cut(s)	127, 388
BstSCI	CCNGG	6 cut(s)	458, 1022, 1130, 1249, 1558, 1559
BstSFI	CTRYAG	1 cut(s)	1381
BstUI	CGCG	2 cut(s)	237, 712
BstV1I	GCAGC	7 cut(s)	269, 622, 1243, 1325, 1405, 1421, 1660
BstX2I	RGATCY	3 cut(s)	946, 1402, 1717
BstYI	RGATCY	3 cut(s)	946, 1402, 1717
BsuRI	GGCC	4 cut(s)	248, 509, 854, 1100
BtgI	CCRYGG	1 cut(s)	216
BtgZI	GCGATG	1 cut(s)	804
BtrI	CACGTC	1 cut(s)	110
BtsCI	GGATG	5 cut(s)	63, 828, 1032, 1045, 1621
BtsI	GCAGTG	3 cut(s)	92, 1359, 1686
BtsIMutI	CAGTG	4 cut(s)	92, 1011, 1359, 1686
BveI	ACCTGC	1 cut(s)	904
Cac8I	GCNNGC	5 cut(s)	297, 586, 880, 1074, 1381
CaiI	CAGNNNCTG	1 cut(s)	424
CfoI	GCGC	5 cut(s)	237, 418, 712, 1078, 1379
Cfr13I	GGNCC	4 cut(s)	160, 246, 1099, 1441
Cfr9I	CCCGGG	1 cut(s)	1559
Csp6I	GTAC	3 cut(s)	346, 388, 1210
CviQI	GTAC	3 cut(s)	346, 388, 1210
DdeI	CTNAG	8 cut(s)	50, 441, 533, 780, 1103, 1494, 1652, 1812
DinI	GGCGCC	1 cut(s)	1378
DpnI	GATC	6 cut(s)	948, 1248, 1281, 1404, 1640, 1719
DpnII	GATC	6 cut(s)	946, 1246, 1279, 1402, 1638, 1717
DraI	TTTAAA	1 cut(s)	631
DrdI	GACNNNNNNGTC	1 cut(s)	257
DseDI	GACNNNNNNGTC	1 cut(s)	257
Eam1104I	CTCTTC	2 cut(s)	843, 1249
EarI	CTCTTC	2 cut(s)	843, 1249
Ecl136II	GAGCTC	1 cut(s)	271
Eco130I	CCWWGG	2 cut(s)	216, 510
Eco147I	AGGCCT	1 cut(s)	509
Eco24I	GRGCYC	1 cut(s)	273
Eco31I	GGTCTC	1 cut(s)	186
Eco32I	GATATC	1 cut(s)	474
Eco47I	GGWCC	2 cut(s)	160, 1441
Eco53kI	GAGCTC	1 cut(s)	271
Eco57I	CTGAAG	2 cut(s)	867, 1536
Eco88I	CYCGRG	2 cut(s)	199, 1559
EcoICRI	GAGCTC	1 cut(s)	271
EcoO109I	RGGNCCY	1 cut(s)	1099
EcoRII	CCWGG	3 cut(s)	458, 1022, 1249
EcoRV	GATATC	1 cut(s)	474
EcoT14I	CCWWGG	2 cut(s)	216, 510
EcoT38I	GRGCYC	1 cut(s)	273
EgeI	GGCGCC	1 cut(s)	1378
EheI	GGCGCC	1 cut(s)	1378
ErhI	CCWWGG	2 cut(s)	216, 510
FalI	AAGNNNNNCTT	6 cut(s)	269, 301, 347, 379, 1731, 1763
FauI	CCCGC	1 cut(s)	705
FauNDI	CATATG	1 cut(s)	1414
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	7 cut(s)	283, 611, 1232, 1314, 1410, 1419, 1649
FokI	GGATG	5 cut(s)	50, 835, 1039, 1052, 1608
FriOI	GRGCYC	1 cut(s)	273
Fsp4HI	GCNGC	7 cut(s)	283, 611, 1232, 1314, 1410, 1419, 1649
FspBI	CTAG	4 cut(s)	971, 1073, 1406, 1539
GlaI	GCGC	5 cut(s)	236, 417, 711, 1077, 1378
GluI	GCNGC	7 cut(s)	283, 611, 1232, 1314, 1410, 1419, 1649
GsaI	CCCAGC	2 cut(s)	639, 1191
HaeII	RGCGCY	1 cut(s)	1380
HaeIII	GGCC	4 cut(s)	248, 509, 854, 1100
HapII	CCGG	5 cut(s)	738, 1131, 1393, 1455, 1560
HhaI	GCGC	5 cut(s)	237, 418, 712, 1078, 1379
Hin1I	GRCGYC	2 cut(s)	651, 1377
Hin6I	GCGC	5 cut(s)	235, 416, 710, 1076, 1377
HinP1I	GCGC	5 cut(s)	235, 416, 710, 1076, 1377
HinfI	GANTC	5 cut(s)	140, 251, 644, 1591, 1616
HpaII	CCGG	5 cut(s)	738, 1131, 1393, 1455, 1560
HphI	GGTGA	7 cut(s)	135, 163, 707, 806, 1147, 1352, 1382
Hpy166II	GTNNAC	7 cut(s)	171, 262, 322, 682, 1343, 1390, 1582
Hpy188I	TCNGA	7 cut(s)	268, 649, 663, 783, 807, 957, 1497
Hpy188III	TCNNGA	8 cut(s)	199, 738, 817, 944, 971, 1219, 1694, 1721
Hpy8I	GTNNAC	7 cut(s)	171, 262, 322, 682, 1343, 1390, 1582
Hpy99I	CGWCG	2 cut(s)	260, 434
HpyAV	CCTTC	7 cut(s)	32, 370, 533, 903, 1030, 1284, 1331
HpyCH4III	ACNGT	5 cut(s)	168, 426, 557, 886, 1015
HpyF10VI	GCNNNNNNNGC	9 cut(s)	212, 221, 296, 313, 709, 851, 1073, 1415, 1418
HpyF3I	CTNAG	8 cut(s)	50, 441, 533, 780, 1103, 1494, 1652, 1812
Hsp92I	GRCGYC	2 cut(s)	651, 1377
HspAI	GCGC	5 cut(s)	235, 416, 710, 1076, 1377
KasI	GGCGCC	1 cut(s)	1376
Kpn2I	TCCGGA	1 cut(s)	737
KpnI	GGTACC	1 cut(s)	349
Kzo9I	GATC	6 cut(s)	946, 1246, 1279, 1402, 1638, 1717
LmnI	GCTCC	2 cut(s)	770, 1053
Lsp1109I	GCAGC	7 cut(s)	269, 622, 1243, 1325, 1405, 1421, 1660
LweI	GCATC	4 cut(s)	519, 994, 1339, 1441
MaeI	CTAG	4 cut(s)	971, 1073, 1406, 1539
MaeIII	GTNAC	4 cut(s)	1354, 1510, 1546, 1685
MalI	GATC	6 cut(s)	948, 1248, 1281, 1404, 1640, 1719
MboI	GATC	6 cut(s)	946, 1246, 1279, 1402, 1638, 1717
MboII	GAAGA	8 cut(s)	561, 860, 1013, 1045, 1211, 1266, 1274, 1517
MflI	RGATCY	3 cut(s)	946, 1402, 1717
MhlI	GDGCHC	4 cut(s)	273, 670, 1058, 1263
Mly113I	GGCGCC	1 cut(s)	1377
MlyI	GAGTC	2 cut(s)	245, 1610
MmeI	TCCRAC	3 cut(s)	187, 621, 1550
MroI	TCCGGA	1 cut(s)	737
MroXI	GAANNNNTTC	1 cut(s)	812
MseI	TTAA	5 cut(s)	365, 393, 630, 1434, 1787
MslI	CAYNNNNRTG	3 cut(s)	383, 924, 1395
MspA1I	CMGCKG	2 cut(s)	845, 1651
MspI	CCGG	5 cut(s)	738, 1131, 1393, 1455, 1560
MspR9I	CCNGG	6 cut(s)	460, 1024, 1132, 1251, 1560, 1561
MvaI	CCWGG	3 cut(s)	460, 1024, 1251
MvnI	CGCG	2 cut(s)	237, 712
MwoI	GCNNNNNNNGC	9 cut(s)	212, 221, 296, 313, 709, 851, 1073, 1415, 1418
NarI	GGCGCC	1 cut(s)	1377
NciI	CCSGG	3 cut(s)	1132, 1560, 1561
NcoI	CCATGG	1 cut(s)	216
NdeI	CATATG	1 cut(s)	1414
NdeII	GATC	6 cut(s)	946, 1246, 1279, 1402, 1638, 1717
NheI	GCTAGC	1 cut(s)	1072
NlaIV	GGNNCC	4 cut(s)	347, 1378, 1443, 1459
NmeAIII	GCCGAG	1 cut(s)	271
NmuCI	GTSAC	2 cut(s)	1354, 1510
NspI	RCATGY	2 cut(s)	127, 388
PceI	AGGCCT	1 cut(s)	509
PciI	ACATGT	1 cut(s)	384
PcsI	WCGNNNNNNNCGW	2 cut(s)	264, 482
PdmI	GAANNNNTTC	1 cut(s)	812
PfeI	GAWTC	3 cut(s)	140, 644, 1591
PflFI	GACNNNGTC	1 cut(s)	254
PfoI	TCCNGGA	2 cut(s)	458, 1249
PkrI	GCNGC	7 cut(s)	284, 612, 1233, 1315, 1411, 1420, 1650
PleI	GAGTC	2 cut(s)	245, 1610
PluTI	GGCGCC	1 cut(s)	1380
PpsI	GAGTC	2 cut(s)	245, 1610
Ppu21I	YACGTR	1 cut(s)	564
PscI	ACATGT	1 cut(s)	384
Psp124BI	GAGCTC	1 cut(s)	273
Psp1406I	AACGTT	2 cut(s)	372, 450
Psp6I	CCWGG	3 cut(s)	458, 1022, 1249
PspFI	CCCAGC	2 cut(s)	635, 1187
PspGI	CCWGG	3 cut(s)	458, 1022, 1249
PspN4I	GGNNCC	4 cut(s)	347, 1378, 1443, 1459
PspPI	GGNCC	4 cut(s)	160, 246, 1099, 1441
PstI	CTGCAG	1 cut(s)	1385
PstNI	CAGNNNCTG	1 cut(s)	424
PsuI	RGATCY	3 cut(s)	946, 1402, 1717
PsyI	GACNNNGTC	1 cut(s)	254
PvuII	CAGCTG	2 cut(s)	845, 1651
RsaI	GTAC	3 cut(s)	347, 389, 1211
RsaNI	GTAC	3 cut(s)	346, 388, 1210
RseI	CAYNNNNRTG	3 cut(s)	383, 924, 1395
SacI	GAGCTC	1 cut(s)	273
SaqAI	TTAA	5 cut(s)	365, 393, 630, 1434, 1787
SatI	GCNGC	7 cut(s)	283, 611, 1232, 1314, 1410, 1419, 1649
Sau3AI	GATC	6 cut(s)	946, 1246, 1279, 1402, 1638, 1717
Sau96I	GGNCC	4 cut(s)	160, 246, 1099, 1441
SbfI	CCTGCAGG	1 cut(s)	1385
SchI	GAGTC	2 cut(s)	245, 1610
ScrFI	CCNGG	6 cut(s)	460, 1024, 1132, 1251, 1560, 1561
SdaI	CCTGCAGG	1 cut(s)	1385
SduI	GDGCHC	4 cut(s)	273, 670, 1058, 1263
SfaNI	GCATC	4 cut(s)	519, 994, 1339, 1441
SfcI	CTRYAG	1 cut(s)	1381
SfoI	GGCGCC	1 cut(s)	1378
SinI	GGWCC	2 cut(s)	160, 1441
SmaI	CCCGGG	1 cut(s)	1561
SmiMI	CAYNNNNRTG	3 cut(s)	383, 924, 1395
SmlI	CTYRAG	2 cut(s)	605, 1721
SmoI	CTYRAG	2 cut(s)	605, 1721
Sse8387I	CCTGCAGG	1 cut(s)	1385
SseBI	AGGCCT	1 cut(s)	509
SsiI	CCGC	3 cut(s)	237, 502, 712
SspDI	GGCGCC	1 cut(s)	1376
SspMI	CTAG	4 cut(s)	971, 1073, 1406, 1539
SstI	GAGCTC	1 cut(s)	273
StuI	AGGCCT	1 cut(s)	509
StyD4I	CCNGG	6 cut(s)	458, 1022, 1130, 1249, 1558, 1559
StyI	CCWWGG	2 cut(s)	216, 510
TaaI	ACNGT	5 cut(s)	168, 426, 557, 886, 1015
TaqI	TCGA	5 cut(s)	429, 485, 686, 1113, 1475
TfiI	GAWTC	3 cut(s)	140, 644, 1591
Tru1I	TTAA	5 cut(s)	365, 393, 630, 1434, 1787
Tru9I	TTAA	5 cut(s)	365, 393, 630, 1434, 1787
TscAI	CASTG	4 cut(s)	99, 1018, 1359, 1686
TseFI	GTSAC	2 cut(s)	1354, 1510
TseI	GCWGC	7 cut(s)	282, 610, 1231, 1313, 1409, 1418, 1648
Tsp45I	GTSAC	2 cut(s)	1354, 1510
TspGWI	ACGGA	2 cut(s)	244, 1454
TspMI	CCCGGG	1 cut(s)	1559
TspRI	CASTG	4 cut(s)	99, 1018, 1359, 1686
Tth111I	GACNNNGTC	1 cut(s)	254
VpaK11BI	GGWCC	2 cut(s)	160, 1441
XapI	RAATTY	5 cut(s)	176, 395, 494, 1428, 1702
XbaI	TCTAGA	1 cut(s)	970
XceI	RCATGY	2 cut(s)	127, 388
XcmI	CCANNNNNNNNNTGG	1 cut(s)	214
XmaI	CCCGGG	1 cut(s)	1559
XmiI	GTMKAC	1 cut(s)	261
XmnI	GAANNNNTTC	1 cut(s)	812
XspI	CTAG	4 cut(s)	971, 1073, 1406, 1539
ZraI	GACGTC	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.