Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0016566

Physical Location & Seq

Genomic Coordinates Forward (+)

43366320 .. 43368259

Gene Structure 1940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G021820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1911 bp

ATGAGAGCCGTCTCCAAGTTCAAATACAAAGCATGGCCTCCACTATCACTGTCACTCTCACGTTCTTGCTCTCACATGGCCACCGTCACAGAATCACCGACTCTGGTCGAACAGTTCACCCACTTCTGCTACCAGAGAGACCTCCCCAGAGCCATGACGGCCATGGAAGCTATGCAAAGACGTGGACTCTGGGCCGACTCAGTAGTCTACTCGGAGCTCATCAAGTGCTGCCTGGCTCGTCGCGCCGTTCAACAAGGCAGGCTCGTCCACAAGCACGTTTTCTCAAATGGGCACCACCCCCAAACCTTTTTAATCAACATTTTCATAAACATGTACGTCAAGTTTTCTCTATTGGACGAAGCAGAGCAACTGTTCGACAAAATGCCTGAGAGGAATGTGATTTCCTGGACGACTATGATTTCAGCTTATTGTCATGCTAAGATGAACAGCAAGGCATTGGAGTCTTTGATTTTGATGCTTAGAGAGGGTGTGTGGCCGAATAGCTTCACATACTCTTCGGTTTTGAGGGCTTGCGAGGGGTTAGGGAATCTCAAGCAGCTGCATTGTTGTATTGTTAAAGTGGGGTTAGAGTCTGATGTGTTTGTTCGGAGTGCTCTGATTGATGTCTACTCGAAATTGGGTGACTTGCAAAATGCGCTAGGCGTTTTCAATGAGATGGTGACTGGGGATTCAGTTGTTTGGAGCTCTATCATTGGAGCTTTTGCGCAAAATAGTAATGGCGATGAAGCGCTGGATCTTTTCAAGAGGATGAAGAGGGCAGGGTTTGGAGCTGAAGAGGCGACGTTGACAAGTGTCTTGAGAGCCTGTACAGCATTGGCACTTTTGGAATTGGGGAGACAAGTCCATGTTCATGCACTGAAGTATGGTCCGGATTTAATTCTGAACAATGCGCTTCTGGATATGTATTGCAAGTGTGGAAGTTTGGAAGATGCAAATGCTGTTTTTACGAGGATGGTGGAGAAGGATGTAATCTCTTGGAGCACCATGATTGCAGGGTTGGCTCAAAATGGTTTCAGCCAAGAGGCACTGAAGTTGTTCGAGGAAATGAAGGTTTCGCGGACAAAACCAAACTACATCACAGTTCTTGGGGTTCTGTTTGCTTGTAGTCATGCAGGGCTTTTAGAAGAGGGGTGGTACTACTTCCAGAATATGAAGCAGCTCTTCGGGATTGATCCTGGAAGAGAGCACCATGGTTGTGTTATTGATCTTCTTGGAAGGGCCGGGAAGCTTGATGAGGCAGCAAGGTTGATTCAAGAAATGCAATGTGAACCAGATGCAGTGACATGGAGGACTTTGCTCGGCGCATGCAGGGTTCATCGGAATGTTGATCTAGCTACACATGCTGCCAAACAAATTCTGAGAATGGACCCTGATGATGCTGGAACCTACATATTATTATCCAATCTATATGCAATTTCTCAGAGATGGGATGATGTTGCAGAAGTCAGGAAGAGTATGAGAGCCAGAGGAATCACTAAAGAACCAGGGTGTAGCTGGATTGAAGTGAACAAACAGATCCATGCGTTTATTATGGGAGATGACTCGCATCCACAAATTGAAGAGATCAATAAGCAGCTAAGCTTCTTGATTGATAGACTCATGGGAATAGGTTATGTTCCAGATACAAACTTTGTTTTGCAAGATCTTGAGGGAGAACAGAGGGAGGCTTCTCTTCTATCACACAGTGAGAGATTGGCCATTGTATTTGGTATAATGAACTTGCCTAAGGGAATGACTGTTAGGGTCAGGAAAAACCTCAGGATCTGTGGAGACTGTCATGTATTTGCAAAACTTGTAGCAAAGTTGGAGCAGAGAACTATTGTGATAAGAGATCCCATTCGGTACCACCATTTTCAAGATGGAGTATGTTCCTGTGGAGATTATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

636

Amino Acids

71.77

Weight (kDa)

7.27

Isoelectric Point (pI)

37.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	131 - 178	6.2e-11	PPR repeat family
PPR_2	PF13041	230 - 276	7e-07	PPR repeat family
PPR	PF01535	232 - 262	2.8e-07	PPR repeat
PPR_1	PF12854	326 - 357	6.1e-06	PPR repeat
PPR_2	PF13041	328 - 369	2.8e-08	PPR repeat family
PPR	PF01535	331 - 358	1e-07	PPR repeat
E_motif	PF20431	446 - 508	4.8e-22	E motif
DYW_deaminase	PF14432	544 - 636	2e-37	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03880
fragaria_vesca	FvH4_2g16980
malus_domestica	MD05G1142000.v1.1 MD05G1142900.v1.1
prunus_persica	Prupe.8G181700_v2.0.a1
pyrus_communis	pycom05g13740
rosa_chinensis	RchiOBHm_Chr6g0281171
rosa_laevigata	RLG00000012988
rosa_multiflora	Rmu_sc0001705.1_g000021 Rmu_sc0035650.1_g000002
rosa_roxburghii	Rroxscaffold_7G00187240
rosa_rugosa	Rorug06G0139500
rosa_samantha	Rh6DG245900
rosa_wichuraiana	Rw6G021820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	203
Acc16I	TGCGCA	1 cut(s)	726
Acc65I	GGTACC	1 cut(s)	1863
AccB1I	GGYRCC	2 cut(s)	291, 1863
AccI	GTMKAC	2 cut(s)	207, 627
AccII	CGCG	2 cut(s)	243, 1078
AccIII	TCCGGA	1 cut(s)	889
AciI	CCGC	1 cut(s)	1078
AclWI	GGATC	5 cut(s)	762, 1187, 1531, 1790, 1847
AcoI	YGGCCR	4 cut(s)	78, 159, 494, 1716
AcsI	RAATTY	1 cut(s)	1374
AcuI	CTGAAG	3 cut(s)	813, 899, 1070
AdeI	CACNNNGTG	1 cut(s)	1706
AfaI	GTAC	4 cut(s)	335, 829, 1157, 1865
AfeI	AGCGCT	1 cut(s)	750
AflIII	ACRYGT	1 cut(s)	330
AgsI	TTSAA	8 cut(s)	22, 251, 670, 763, 1274, 1523, 1580, 1877
AjiI	CACGTC	1 cut(s)	182
AjnI	CCWGG	4 cut(s)	231, 404, 1195, 1504
Alw21I	GWGCWC	5 cut(s)	219, 616, 707, 1004, 1209
Alw26I	GTCTC	4 cut(s)	16, 132, 850, 1785
AlwI	GGATC	5 cut(s)	762, 1187, 1531, 1790, 1847
AlwNI	CAGNNNCTG	1 cut(s)	1785
Aor13HI	TCCGGA	1 cut(s)	889
Aor51HI	AGCGCT	1 cut(s)	750
AoxI	GGCC	7 cut(s)	35, 78, 159, 192, 494, 1239, 1716
ApeKI	GCWGC	7 cut(s)	228, 556, 559, 1177, 1259, 1364, 1594
ApoI	RAATTY	1 cut(s)	1374
Asp700I	GAANNNNTTC	2 cut(s)	503, 1055
Asp718I	GGTACC	1 cut(s)	1863
AspLEI	GCGC	6 cut(s)	245, 658, 727, 751, 913, 1325
AspS9I	GGNCC	4 cut(s)	192, 887, 1239, 1387
AsuC2I	CCSGG	1 cut(s)	1243
AsuHPI	GGTGA	4 cut(s)	87, 109, 653, 691
AvaII	GGWCC	2 cut(s)	887, 1387
AxyI	CCTNAGG	2 cut(s)	1746, 1778
BaeGI	GKGCMC	1 cut(s)	294
BalI	TGGCCA	2 cut(s)	80, 1718
BanI	GGYRCC	2 cut(s)	291, 1863
BanII	GRGCYC	2 cut(s)	219, 707
Bbv12I	GWGCWC	5 cut(s)	219, 616, 707, 1004, 1209
BbvI	GCAGC	7 cut(s)	215, 546, 568, 1189, 1271, 1351, 1606
BccI	CCATC	4 cut(s)	670, 967, 1440, 1874
BceAI	ACGGC	2 cut(s)	174, 230
BciT130I	CCWGG	4 cut(s)	233, 406, 1197, 1506
BcnI	CCSGG	1 cut(s)	1243
BcoDI	GTCTC	4 cut(s)	16, 132, 850, 1785
BfaI	CTAG	2 cut(s)	659, 1352
BfoI	RGCGCY	1 cut(s)	752
BglI	GCCNNNNNGGC	1 cut(s)	158
BglII	AGATCT	1 cut(s)	1663
BisI	GCNGC	7 cut(s)	229, 557, 560, 1178, 1260, 1365, 1595
BlpI	GCTNAGC	1 cut(s)	1598
BlsI	GCNGC	7 cut(s)	230, 558, 561, 1179, 1261, 1366, 1596
Bme1390I	CCNGG	5 cut(s)	233, 406, 1197, 1243, 1506
Bme18I	GGWCC	2 cut(s)	887, 1387
BmgBI	CACGTC	1 cut(s)	182
BmgT120I	GGNCC	4 cut(s)	192, 887, 1239, 1387
BmiI	GGNNCC	4 cut(s)	293, 1389, 1405, 1865
BmrFI	CCNGG	5 cut(s)	233, 406, 1197, 1243, 1506
BmrI	ACTGGG	1 cut(s)	693
BmsI	GCATC	5 cut(s)	465, 940, 1285, 1387, 1576
BmuI	ACTGGG	1 cut(s)	693
BoxI	GACNNNNGTC	2 cut(s)	104, 812
Bpu1102I	GCTNAGC	1 cut(s)	1598
BpuEI	CTTGAG	3 cut(s)	536, 838, 1688
BpuMI	CCSGG	1 cut(s)	1243
BsaI	GGTCTC	1 cut(s)	132
BsaJI	CCNNGG	3 cut(s)	162, 1210, 1505
BsaWI	WCCGGW	1 cut(s)	889
Bse1I	ACTGG	1 cut(s)	688
Bse21I	CCTNAGG	2 cut(s)	1746, 1778
Bse3DI	GCAATG	1 cut(s)	1289
BseAI	TCCGGA	1 cut(s)	889
BseBI	CCWGG	4 cut(s)	233, 406, 1197, 1506
BseDI	CCNNGG	3 cut(s)	162, 1210, 1505
BseGI	GGATG	5 cut(s)	774, 978, 991, 1456, 1567
BseMI	GCAATG	1 cut(s)	1289
BseMII	CTCAG	5 cut(s)	213, 378, 1370, 1454, 1792
BseNI	ACTGG	1 cut(s)	688
BseSI	GKGCMC	1 cut(s)	294
BseXI	GCAGC	7 cut(s)	215, 546, 568, 1189, 1271, 1351, 1606
Bsh1236I	CGCG	2 cut(s)	243, 1078
BshFI	GGCC	7 cut(s)	37, 80, 161, 194, 496, 1241, 1718
BshNI	GGYRCC	2 cut(s)	291, 1863
BsiHKAI	GWGCWC	5 cut(s)	219, 616, 707, 1004, 1209
BsiSI	CCGG	2 cut(s)	890, 1242
BsmAI	GTCTC	4 cut(s)	16, 132, 850, 1785
BsmBI	CGTCTC	1 cut(s)	16
BsnI	GGCC	7 cut(s)	37, 80, 161, 194, 496, 1241, 1718
Bso31I	GGTCTC	1 cut(s)	132
Bsp1286I	GDGCHC	6 cut(s)	219, 294, 616, 707, 1004, 1209
Bsp13I	TCCGGA	1 cut(s)	889
Bsp1407I	TGTACA	1 cut(s)	827
Bsp143I	GATC	9 cut(s)	754, 1192, 1225, 1348, 1536, 1584, 1663, 1782, 1852
Bsp1720I	GCTNAGC	1 cut(s)	1598
Bsp19I	CCATGG	2 cut(s)	162, 1210
BspACI	CCGC	1 cut(s)	1078
BspANI	GGCC	7 cut(s)	37, 80, 161, 194, 496, 1241, 1718
BspCNI	CTCAG	5 cut(s)	212, 379, 1371, 1453, 1791
BspEI	TCCGGA	1 cut(s)	889
BspFNI	CGCG	2 cut(s)	243, 1078
BspLI	GGNNCC	4 cut(s)	293, 1389, 1405, 1865
BspPI	GGATC	5 cut(s)	762, 1187, 1531, 1790, 1847
BspQI	GCTCTTC	1 cut(s)	1187
BspT107I	GGYRCC	2 cut(s)	291, 1863
BspTNI	GGTCTC	1 cut(s)	132
BsrDI	GCAATG	1 cut(s)	1289
BsrGI	TGTACA	1 cut(s)	827
BsrI	ACTGG	1 cut(s)	688
BssECI	CCNNGG	3 cut(s)	162, 1210, 1505
BssMI	GATC	9 cut(s)	754, 1192, 1225, 1348, 1536, 1584, 1663, 1782, 1852
BssT1I	CCWWGG	2 cut(s)	162, 1210
Bst2UI	CCWGG	4 cut(s)	233, 406, 1197, 1506
Bst4CI	ACNGT	8 cut(s)	51, 85, 114, 372, 1102, 1706, 1759, 1796
Bst6I	CTCTTC	9 cut(s)	520, 767, 789, 1140, 1187, 1195, 1466, 1575, 1698
BstAUI	TGTACA	1 cut(s)	827
BstC8I	GCNNGC	3 cut(s)	260, 532, 1327
BstDEI	CTNAG	9 cut(s)	199, 387, 438, 479, 1379, 1440, 1598, 1746, 1778
BstDSI	CCRYGG	2 cut(s)	162, 1210
BstF5I	GGATG	5 cut(s)	774, 978, 991, 1456, 1567
BstFNI	CGCG	2 cut(s)	243, 1078
BstH2I	RGCGCY	1 cut(s)	752
BstHHI	GCGC	6 cut(s)	245, 658, 727, 751, 913, 1325
BstKTI	GATC	9 cut(s)	757, 1195, 1228, 1351, 1539, 1587, 1666, 1785, 1855
BstMAI	GTCTC	4 cut(s)	16, 132, 850, 1785
BstMBI	GATC	9 cut(s)	754, 1192, 1225, 1348, 1536, 1584, 1663, 1782, 1852
BstMWI	GCNNNNNNNGC	8 cut(s)	158, 167, 242, 655, 797, 830, 1019, 1361
BstNI	CCWGG	4 cut(s)	233, 406, 1197, 1506
BstNSI	RCATGY	3 cut(s)	334, 1329, 1364
BstPAI	GACNNNNGTC	2 cut(s)	104, 812
BstSCI	CCNGG	5 cut(s)	231, 404, 1195, 1241, 1504
BstSLI	GKGCMC	1 cut(s)	294
BstUI	CGCG	2 cut(s)	243, 1078
BstV1I	GCAGC	7 cut(s)	215, 546, 568, 1189, 1271, 1351, 1606
BstX2I	RGATCY	5 cut(s)	754, 1536, 1663, 1782, 1852
BstYI	RGATCY	5 cut(s)	754, 1536, 1663, 1782, 1852
Bsu36I	CCTNAGG	2 cut(s)	1746, 1778
BsuRI	GGCC	7 cut(s)	37, 80, 161, 194, 496, 1241, 1718
BtgI	CCRYGG	2 cut(s)	162, 1210
BtgZI	GCGATG	1 cut(s)	756
BtrI	CACGTC	1 cut(s)	182
BtsCI	GGATG	5 cut(s)	774, 978, 991, 1456, 1567
BtsI	GCAGTG	1 cut(s)	1305
BtsIMutI	CAGTG	5 cut(s)	47, 875, 1046, 1305, 1711
Cac8I	GCNNGC	3 cut(s)	260, 532, 1327
CaiI	CAGNNNCTG	1 cut(s)	1785
CfoI	GCGC	6 cut(s)	245, 658, 727, 751, 913, 1325
Cfr13I	GGNCC	4 cut(s)	192, 887, 1239, 1387
Csp6I	GTAC	4 cut(s)	334, 828, 1156, 1864
CviQI	GTAC	4 cut(s)	334, 828, 1156, 1864
DdeI	CTNAG	9 cut(s)	199, 387, 438, 479, 1379, 1440, 1598, 1746, 1778
DpnI	GATC	9 cut(s)	756, 1194, 1227, 1350, 1538, 1586, 1665, 1784, 1854
DpnII	GATC	9 cut(s)	754, 1192, 1225, 1348, 1536, 1584, 1663, 1782, 1852
DraIII	CACNNNGTG	1 cut(s)	1706
DrdI	GACNNNNNNGTC	1 cut(s)	203
DseDI	GACNNNNNNGTC	1 cut(s)	203
EaeI	YGGCCR	4 cut(s)	78, 159, 494, 1716
Eam1104I	CTCTTC	9 cut(s)	520, 767, 789, 1140, 1187, 1195, 1466, 1575, 1698
EarI	CTCTTC	9 cut(s)	520, 767, 789, 1140, 1187, 1195, 1466, 1575, 1698
Ecl136II	GAGCTC	2 cut(s)	217, 705
Eco130I	CCWWGG	2 cut(s)	162, 1210
Eco24I	GRGCYC	2 cut(s)	219, 707
Eco31I	GGTCTC	1 cut(s)	132
Eco47I	GGWCC	2 cut(s)	887, 1387
Eco47III	AGCGCT	1 cut(s)	750
Eco53kI	GAGCTC	2 cut(s)	217, 705
Eco57I	CTGAAG	3 cut(s)	813, 899, 1070
Eco81I	CCTNAGG	2 cut(s)	1746, 1778
EcoICRI	GAGCTC	2 cut(s)	217, 705
EcoRII	CCWGG	4 cut(s)	231, 404, 1195, 1504
EcoT14I	CCWWGG	2 cut(s)	162, 1210
EcoT38I	GRGCYC	2 cut(s)	219, 707
ErhI	CCWWGG	2 cut(s)	162, 1210
Esp3I	CGTCTC	1 cut(s)	16
FalI	AAGNNNNNCTT	2 cut(s)	1166, 1198
FblI	GTMKAC	2 cut(s)	207, 627
Fnu4HI	GCNGC	7 cut(s)	229, 557, 560, 1178, 1260, 1365, 1595
FokI	GGATG	5 cut(s)	781, 985, 998, 1463, 1554
FriOI	GRGCYC	2 cut(s)	219, 707
Fsp4HI	GCNGC	7 cut(s)	229, 557, 560, 1178, 1260, 1365, 1595
FspBI	CTAG	2 cut(s)	659, 1352
FspI	TGCGCA	1 cut(s)	726
GlaI	GCGC	6 cut(s)	244, 657, 726, 750, 912, 1324
GluI	GCNGC	7 cut(s)	229, 557, 560, 1178, 1260, 1365, 1595
HaeII	RGCGCY	1 cut(s)	752
HaeIII	GGCC	7 cut(s)	37, 80, 161, 194, 496, 1241, 1718
HapII	CCGG	2 cut(s)	890, 1242
HhaI	GCGC	6 cut(s)	245, 658, 727, 751, 913, 1325
Hin6I	GCGC	6 cut(s)	243, 656, 725, 749, 911, 1323
HinP1I	GCGC	6 cut(s)	243, 656, 725, 749, 911, 1323
HincII	GTYRAC	1 cut(s)	807
HindII	GTYRAC	1 cut(s)	807
HindIII	AAGCTT	2 cut(s)	1247, 1600
HpaII	CCGG	2 cut(s)	890, 1242
HphI	GGTGA	4 cut(s)	87, 109, 653, 691
Hpy166II	GTNNAC	8 cut(s)	117, 185, 208, 268, 628, 807, 1289, 1528
Hpy188I	TCNGA	8 cut(s)	214, 595, 609, 618, 903, 1341, 1380, 1443
Hpy8I	GTNNAC	8 cut(s)	117, 185, 208, 268, 628, 807, 1289, 1528
Hpy99I	CGWCG	2 cut(s)	243, 805
HpyAV	CCTTC	3 cut(s)	976, 1063, 1230
HpyCH4III	ACNGT	8 cut(s)	51, 85, 114, 372, 1102, 1706, 1759, 1796
HpyCH4IV	ACGT	5 cut(s)	61, 181, 276, 336, 803
HpyF10VI	GCNNNNNNNGC	8 cut(s)	158, 167, 242, 655, 797, 830, 1019, 1361
HpyF3I	CTNAG	9 cut(s)	199, 387, 438, 479, 1379, 1440, 1598, 1746, 1778
HpySE526I	ACGT	5 cut(s)	61, 181, 276, 336, 803
HspAI	GCGC	6 cut(s)	243, 656, 725, 749, 911, 1323
Kpn2I	TCCGGA	1 cut(s)	889
KpnI	GGTACC	1 cut(s)	1867
Kzo9I	GATC	9 cut(s)	754, 1192, 1225, 1348, 1536, 1584, 1663, 1782, 1852
LguI	GCTCTTC	1 cut(s)	1187
LmnI	GCTCC	6 cut(s)	214, 702, 716, 788, 999, 1828
Lsp1109I	GCAGC	7 cut(s)	215, 546, 568, 1189, 1271, 1351, 1606
LweI	GCATC	5 cut(s)	465, 940, 1285, 1387, 1576
MaeI	CTAG	2 cut(s)	659, 1352
MaeII	ACGT	5 cut(s)	61, 181, 276, 336, 803
MaeIII	GTNAC	5 cut(s)	51, 85, 641, 679, 1300
MalI	GATC	9 cut(s)	756, 1194, 1227, 1350, 1538, 1586, 1665, 1784, 1854
MboI	GATC	9 cut(s)	754, 1192, 1225, 1348, 1536, 1584, 1663, 1782, 1852
MflI	RGATCY	5 cut(s)	754, 1536, 1663, 1782, 1852
MhlI	GDGCHC	6 cut(s)	219, 294, 616, 707, 1004, 1209
MlsI	TGGCCA	2 cut(s)	80, 1718
MluCI	AATT	6 cut(s)	635, 848, 897, 1374, 1434, 1575
MluNI	TGGCCA	2 cut(s)	80, 1718
MlyI	GAGTC	7 cut(s)	94, 180, 191, 470, 599, 1556, 1611
MmeI	TCCRAC	1 cut(s)	1806
Mox20I	TGGCCA	2 cut(s)	80, 1718
MroI	TCCGGA	1 cut(s)	889
MroXI	GAANNNNTTC	2 cut(s)	503, 1055
MscI	TGGCCA	2 cut(s)	80, 1718
MseI	TTAA	3 cut(s)	311, 576, 896
MslI	CAYNNNNRTG	4 cut(s)	329, 870, 1215, 1341
Msp20I	TGGCCA	2 cut(s)	80, 1718
MspA1I	CMGCKG	1 cut(s)	559
MspI	CCGG	2 cut(s)	890, 1242
MspR9I	CCNGG	5 cut(s)	233, 406, 1197, 1243, 1506
MvaI	CCWGG	4 cut(s)	233, 406, 1197, 1506
MvnI	CGCG	2 cut(s)	243, 1078
MwoI	GCNNNNNNNGC	8 cut(s)	158, 167, 242, 655, 797, 830, 1019, 1361
NciI	CCSGG	1 cut(s)	1243
NcoI	CCATGG	2 cut(s)	162, 1210
NdeII	GATC	9 cut(s)	754, 1192, 1225, 1348, 1536, 1584, 1663, 1782, 1852
NlaIV	GGNNCC	4 cut(s)	293, 1389, 1405, 1865
NmeAIII	GCCGAG	1 cut(s)	1299
NmuCI	GTSAC	5 cut(s)	51, 85, 641, 679, 1300
NsbI	TGCGCA	1 cut(s)	726
NspI	RCATGY	3 cut(s)	334, 1329, 1364
PaeI	GCATGC	1 cut(s)	1329
PciI	ACATGT	1 cut(s)	330
PciSI	GCTCTTC	1 cut(s)	1187
PdmI	GAANNNNTTC	2 cut(s)	503, 1055
PfeI	GAWTC	5 cut(s)	92, 547, 689, 1270, 1491
PfoI	TCCNGGA	2 cut(s)	404, 1195
PkrI	GCNGC	7 cut(s)	230, 558, 561, 1179, 1261, 1366, 1596
PleI	GAGTC	7 cut(s)	94, 180, 191, 469, 598, 1556, 1611
PpsI	GAGTC	7 cut(s)	94, 180, 191, 469, 598, 1556, 1611
PscI	ACATGT	1 cut(s)	330
PshAI	GACNNNNGTC	2 cut(s)	104, 812
Psp124BI	GAGCTC	2 cut(s)	219, 707
Psp6I	CCWGG	4 cut(s)	231, 404, 1195, 1504
PspGI	CCWGG	4 cut(s)	231, 404, 1195, 1504
PspN4I	GGNNCC	4 cut(s)	293, 1389, 1405, 1865
PspPI	GGNCC	4 cut(s)	192, 887, 1239, 1387
PstNI	CAGNNNCTG	1 cut(s)	1785
PsuI	RGATCY	5 cut(s)	754, 1536, 1663, 1782, 1852
PvuII	CAGCTG	1 cut(s)	559
RsaI	GTAC	4 cut(s)	335, 829, 1157, 1865
RsaNI	GTAC	4 cut(s)	334, 828, 1156, 1864
RseI	CAYNNNNRTG	4 cut(s)	329, 870, 1215, 1341
SacI	GAGCTC	2 cut(s)	219, 707
SapI	GCTCTTC	1 cut(s)	1187
SaqAI	TTAA	3 cut(s)	311, 576, 896
SatI	GCNGC	7 cut(s)	229, 557, 560, 1178, 1260, 1365, 1595
Sau3AI	GATC	9 cut(s)	754, 1192, 1225, 1348, 1536, 1584, 1663, 1782, 1852
Sau96I	GGNCC	4 cut(s)	192, 887, 1239, 1387
SchI	GAGTC	7 cut(s)	94, 180, 191, 470, 599, 1556, 1611
ScrFI	CCNGG	5 cut(s)	233, 406, 1197, 1243, 1506
SduI	GDGCHC	6 cut(s)	219, 294, 616, 707, 1004, 1209
SfaNI	GCATC	5 cut(s)	465, 940, 1285, 1387, 1576
SinI	GGWCC	2 cut(s)	887, 1387
SmiMI	CAYNNNNRTG	4 cut(s)	329, 870, 1215, 1341
SmlI	CTYRAG	3 cut(s)	551, 817, 1667
SmoI	CTYRAG	3 cut(s)	551, 817, 1667
SphI	GCATGC	1 cut(s)	1329
Sse9I	AATT	6 cut(s)	635, 848, 897, 1374, 1434, 1575
SsiI	CCGC	1 cut(s)	1078
SspMI	CTAG	2 cut(s)	659, 1352
SstI	GAGCTC	2 cut(s)	219, 707
StyD4I	CCNGG	5 cut(s)	231, 404, 1195, 1241, 1504
StyI	CCWWGG	2 cut(s)	162, 1210
TaaI	ACNGT	8 cut(s)	51, 85, 114, 372, 1102, 1706, 1759, 1796
TaiI	ACGT	5 cut(s)	64, 184, 279, 339, 806
TaqI	TCGA	4 cut(s)	108, 375, 632, 1059
TasI	AATT	6 cut(s)	635, 848, 897, 1374, 1434, 1575
TatI	WGTACW	1 cut(s)	827
TfiI	GAWTC	5 cut(s)	92, 547, 689, 1270, 1491
Tru1I	TTAA	3 cut(s)	311, 576, 896
Tru9I	TTAA	3 cut(s)	311, 576, 896
TscAI	CASTG	5 cut(s)	54, 882, 1053, 1305, 1711
TseFI	GTSAC	5 cut(s)	51, 85, 641, 679, 1300
TseI	GCWGC	7 cut(s)	228, 556, 559, 1177, 1259, 1364, 1594
Tsp45I	GTSAC	5 cut(s)	51, 85, 641, 679, 1300
TspDTI	ATGAA	9 cut(s)	313, 458, 759, 785, 860, 1082, 1187, 1325, 1751
TspRI	CASTG	5 cut(s)	54, 882, 1053, 1305, 1711
VpaK11BI	GGWCC	2 cut(s)	887, 1387
XapI	RAATTY	1 cut(s)	1374
XceI	RCATGY	3 cut(s)	334, 1329, 1364
XcmI	CCANNNNNNNNNTGG	3 cut(s)	160, 1512, 1877
XmiI	GTMKAC	2 cut(s)	207, 627
XmnI	GAANNNNTTC	2 cut(s)	503, 1055
XspI	CTAG	2 cut(s)	659, 1352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.