Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013411

Physical Location & Seq

Genomic Coordinates Reverse (-)

1461548 .. 1462944

Gene Structure 1397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G04240.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGGTCTATCAAGTCTTCCTGGTCCATCAGAAGGAATGTTATGTGTGATATTAGTTAATACAGCATTATCGATCTCCATTGTCAAAGGCATTGTAAGATCATTCCTTGGCATAGTAGGAATCAGTCTCTCGCCGTCTTCATCCTCGCCTTCTTCGGTGACGGTATCTTCAGAGAATTCATCAACTTCAGAGTCATTTGATTTCCGGGTCTGCCAACCAGAGAGTTACCTTGAGGAGTTCAGGAACCGGACTCCGACACTGAGGTTTGAGAGCTTGTGCAGGTGCAAGAAACAGGCAGACAATGAGTGTTCTGTGTGTTTGTCGAAATTCCAAGGGGATTCAGAGATCAACAAGCTCAAGTGCGGCCATTTGTTTCACAAAACATGCTTGGAGAAATGGATAGACTATTGGAACATCACTTGCCCATTGTGTAGGACTCCTCTTGTTGTTGTGCCAGAAGACCATCAGCTTTCTTCTAATGTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006066 GO:0006082 GO:0006464 GO:0006508 GO:0006511 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009739 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019752 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0032787 GO:0033993 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043412 GO:0043436 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044281 GO:0044424 GO:0044464 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0080167 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1901615 GO:1901698 GO:1901700 GO:1902644 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

162

Amino Acids

17.93

Weight (kDa)

6.29

Isoelectric Point (pI)

59.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	95 - 145	2.2e-08	RING-H2 zinc finger domain
zf-C3HC4_3	PF13920	100 - 148	6.7e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	101 - 145	7.8e-13	Ring finger domain
zf-RING_11	PF17123	102 - 130	5.7e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	102 - 144	1.3e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	102 - 146	1.4e-06	zinc-RING finger domain
zf-C3HC4	PF00097	103 - 144	9e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	103 - 142	7.7e-07	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04240 AT2G04240
fragaria_vesca	FvH4_6g40400
malus_domestica	MD09G1131400.v1.1 MD17G1105700.v1.1
prunus_persica	Prupe.3G194800_v2.0.a1
pyrus_communis	pycom09g05360 pycom17g10980
rosa_chinensis	RchiOBHm_Chr2g0155621
rosa_laevigata	RLG00000020849
rosa_multiflora	Rmu_sc0003971.1_g000006
rosa_roxburghii	Rroxscaffold_2G00093610
rosa_rugosa	Rorug02G0448500
rosa_samantha	Rh2AG514700 Rh2BG525500 Rh2CG499600 Rh2DG534500
rosa_wichuraiana	Rw2G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	270
Acc36I	ACCTGC	1 cut(s)	270
AciI	CCGC	1 cut(s)	363
AcoI	YGGCCR	1 cut(s)	364
AcsI	RAATTY	2 cut(s)	175, 326
AcuI	CTGAAG	2 cut(s)	153, 171
AfiI	CCNNNNNNNGG	1 cut(s)	32
AjnI	CCWGG	1 cut(s)	19
AluBI	AGCT	3 cut(s)	273, 355, 469
AluI	AGCT	3 cut(s)	273, 355, 469
Alw26I	GTCTC	1 cut(s)	131
AoxI	GGCC	1 cut(s)	364
ApoI	RAATTY	2 cut(s)	175, 326
AspS9I	GGNCC	1 cut(s)	23
AsuC2I	CCSGG	1 cut(s)	206
AsuHPI	GGTGA	1 cut(s)	169
AvaII	GGWCC	1 cut(s)	23
BbsI	GAAGAC	3 cut(s)	8, 129, 465
BccI	CCATC	2 cut(s)	34, 471
BceAI	ACGGC	1 cut(s)	118
BciT130I	CCWGG	1 cut(s)	21
BcnI	CCSGG	1 cut(s)	206
BcoDI	GTCTC	1 cut(s)	131
BfuAI	ACCTGC	1 cut(s)	270
BisI	GCNGC	1 cut(s)	364
BlsI	GCNGC	1 cut(s)	365
Bme1390I	CCNGG	2 cut(s)	21, 206
Bme18I	GGWCC	1 cut(s)	23
BmgT120I	GGNCC	1 cut(s)	23
BmiI	GGNNCC	1 cut(s)	245
BmrFI	CCNGG	2 cut(s)	21, 206
BpiI	GAAGAC	3 cut(s)	8, 129, 465
BpuEI	CTTGAG	2 cut(s)	251, 341
BpuMI	CCSGG	1 cut(s)	206
Bsa29I	ATCGAT	1 cut(s)	71
BsaJI	CCNNGG	2 cut(s)	106, 331
BsaWI	WCCGGW	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
BseBI	CCWGG	1 cut(s)	21
BseCI	ATCGAT	1 cut(s)	71
BseDI	CCNNGG	2 cut(s)	106, 331
BseGI	GGATG	1 cut(s)	140
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseMII	CTCAG	1 cut(s)	251
BseRI	GAGGAG	2 cut(s)	248, 429
BsgI	GTGCAG	1 cut(s)	298
BshFI	GGCC	1 cut(s)	366
BshVI	ATCGAT	1 cut(s)	71
BsiSI	CCGG	2 cut(s)	205, 247
BslI	CCNNNNNNNGG	1 cut(s)	32
BsmAI	GTCTC	1 cut(s)	131
BsnI	GGCC	1 cut(s)	366
Bsp143I	GATC	3 cut(s)	72, 98, 345
BspACI	CCGC	1 cut(s)	363
BspANI	GGCC	1 cut(s)	366
BspCNI	CTCAG	1 cut(s)	252
BspDI	ATCGAT	1 cut(s)	71
BspLI	GGNNCC	1 cut(s)	245
BspMI	ACCTGC	1 cut(s)	270
BssECI	CCNNGG	2 cut(s)	106, 331
BssMI	GATC	3 cut(s)	72, 98, 345
BssT1I	CCWWGG	2 cut(s)	106, 331
Bst2UI	CCWGG	1 cut(s)	21
Bst4CI	ACNGT	1 cut(s)	163
BstDEI	CTNAG	1 cut(s)	260
BstF5I	GGATG	1 cut(s)	140
BstKTI	GATC	3 cut(s)	75, 101, 348
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	3 cut(s)	72, 98, 345
BstNI	CCWGG	1 cut(s)	21
BstNSI	RCATGY	1 cut(s)	387
BstSCI	CCNGG	2 cut(s)	19, 204
BstV2I	GAAGAC	3 cut(s)	8, 129, 465
Bsu15I	ATCGAT	1 cut(s)	71
BsuRI	GGCC	1 cut(s)	366
BsuTUI	ATCGAT	1 cut(s)	71
BtsCI	GGATG	1 cut(s)	140
BtsIMutI	CAGTG	1 cut(s)	257
BveI	ACCTGC	1 cut(s)	270
Cfr13I	GGNCC	1 cut(s)	23
ClaI	ATCGAT	1 cut(s)	71
CviAII	CATG	1 cut(s)	384
CviJI	RGCY	4 cut(s)	273, 355, 366, 469
CviKI_1	RGCY	4 cut(s)	273, 355, 366, 469
DdeI	CTNAG	1 cut(s)	260
DpnI	GATC	3 cut(s)	74, 100, 347
DpnII	GATC	3 cut(s)	72, 98, 345
EaeI	YGGCCR	1 cut(s)	364
Eco130I	CCWWGG	2 cut(s)	106, 331
Eco47I	GGWCC	1 cut(s)	23
Eco57I	CTGAAG	2 cut(s)	153, 171
EcoRI	GAATTC	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	19
EcoT14I	CCWWGG	2 cut(s)	106, 331
ErhI	CCWWGG	2 cut(s)	106, 331
FaeI	CATG	1 cut(s)	387
FaiI	YATR	3 cut(s)	43, 113, 385
FatI	CATG	1 cut(s)	383
Fnu4HI	GCNGC	1 cut(s)	364
FokI	GGATG	1 cut(s)	127
Fsp4HI	GCNGC	1 cut(s)	364
GluI	GCNGC	1 cut(s)	364
HaeIII	GGCC	1 cut(s)	366
HapII	CCGG	2 cut(s)	205, 247
Hin1II	CATG	1 cut(s)	387
HinfI	GANTC	5 cut(s)	120, 191, 250, 338, 436
HpaII	CCGG	2 cut(s)	205, 247
HphI	GGTGA	1 cut(s)	169
Hpy188I	TCNGA	5 cut(s)	31, 172, 190, 255, 343
Hpy188III	TCNNGA	1 cut(s)	241
HpyAV	CCTTC	2 cut(s)	26, 159
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4V	TGCA	2 cut(s)	279, 285
HpyF3I	CTNAG	1 cut(s)	260
Hsp92II	CATG	1 cut(s)	387
Kzo9I	GATC	3 cut(s)	72, 98, 345
LpnPI	CCDG	9 cut(s)	6, 33, 218, 226, 231, 260, 265, 278, 468
MaeIII	GTNAC	2 cut(s)	157, 224
MalI	GATC	3 cut(s)	74, 100, 347
MboI	GATC	3 cut(s)	72, 98, 345
MboII	GAAGA	6 cut(s)	8, 129, 144, 159, 465, 470
MluCI	AATT	2 cut(s)	175, 326
MlyI	GAGTC	3 cut(s)	200, 244, 430
MmeI	TCCRAC	1 cut(s)	278
MnlI	CCTC	4 cut(s)	154, 226, 255, 450
MseI	TTAA	1 cut(s)	57
MspI	CCGG	2 cut(s)	205, 247
MspR9I	CCNGG	2 cut(s)	21, 206
MvaI	CCWGG	1 cut(s)	21
NciI	CCSGG	1 cut(s)	206
NdeII	GATC	3 cut(s)	72, 98, 345
NlaIII	CATG	1 cut(s)	387
NlaIV	GGNNCC	1 cut(s)	245
NmuCI	GTSAC	1 cut(s)	157
NspI	RCATGY	1 cut(s)	387
PaqCI	CACCTGC	1 cut(s)	270
PfeI	GAWTC	2 cut(s)	120, 338
PkrI	GCNGC	1 cut(s)	365
PleI	GAGTC	3 cut(s)	199, 244, 430
PpsI	GAGTC	3 cut(s)	199, 244, 430
Psp6I	CCWGG	1 cut(s)	19
PspGI	CCWGG	1 cut(s)	19
PspN4I	GGNNCC	1 cut(s)	245
PspPI	GGNCC	1 cut(s)	23
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	1 cut(s)	364
Sau3AI	GATC	3 cut(s)	72, 98, 345
Sau96I	GGNCC	1 cut(s)	23
SchI	GAGTC	3 cut(s)	200, 244, 430
ScrFI	CCNGG	2 cut(s)	21, 206
SetI	ASST	6 cut(s)	231, 266, 275, 284, 357, 471
SinI	GGWCC	1 cut(s)	23
SmlI	CTYRAG	2 cut(s)	230, 356
SmoI	CTYRAG	2 cut(s)	230, 356
Sse9I	AATT	2 cut(s)	175, 326
SsiI	CCGC	1 cut(s)	363
StyD4I	CCNGG	2 cut(s)	19, 204
StyI	CCWWGG	2 cut(s)	106, 331
TaaI	ACNGT	1 cut(s)	163
TaqI	TCGA	2 cut(s)	71, 323
TasI	AATT	2 cut(s)	175, 326
TauI	GCSGC	1 cut(s)	366
TfiI	GAWTC	2 cut(s)	120, 338
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	1 cut(s)	264
TseFI	GTSAC	1 cut(s)	157
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	2 cut(s)	129, 168
TspRI	CASTG	1 cut(s)	264
VpaK11BI	GGWCC	1 cut(s)	23
XapI	RAATTY	2 cut(s)	175, 326
XceI	RCATGY	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.