Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0013411

Physical Location & Seq

Genomic Coordinates Reverse (-)

8954855 .. 8956847

Gene Structure 1993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1105700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGGTCTCTCAAGTCTACCAGCTCCATCAGAAGGAGTTCTATGTGTGCTTTTAGTAAACACAGCCCTATCAGTCTCCATTATCAAGGGGATAATCCGATCAGTCCTGCAAGTCGTTGGTATCCGTCTCACATCAGCCTCGTCGTCTTCTTTCCCATCAGAAGACTCTGCTGAAAACCTCTCAGAATCATTTGAGTTCCATGTCAATCCTTCGGCTAGTTACATTGAGGACATCAGGAGCCATATCCCAGCAATTCGGTTTGATGCTGTGTGTAGCTTCAAGCAGCAGGAACACGAATGCTCTGTCTGCCTAACCGAGTTTGAACCTGAATCAGAGATCAACCGCTTGTCTTGTGGCCATATTTTCCATCAACATTGCTTAGAGAAGTGGTTGAATTACTGGAACATTACATGCCCTCTTTGTAGGACTCAGTTTATGCCTGGGGAGGACGCACCCTGCGTCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006066 GO:0006082 GO:0006464 GO:0006508 GO:0006511 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009739 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019752 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0032787 GO:0033993 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043412 GO:0043436 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044281 GO:0044424 GO:0044464 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0080167 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1901615 GO:1901698 GO:1901700 GO:1902644 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

156

Amino Acids

17.25

Weight (kDa)

4.99

Isoelectric Point (pI)

71.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	95 - 142	2.1e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	99 - 142	5.1e-13	Ring finger domain
zf-RING_11	PF17123	99 - 127	2.5e-09	RING-like zinc finger
zf-RING_5	PF14634	99 - 143	1.7e-08	zinc-RING finger domain
zf-C3HC4_2	PF13923	99 - 141	1.9e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	100 - 141	1.2e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	100 - 139	2.4e-07	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04240 AT2G04240
fragaria_vesca	FvH4_6g40400
malus_domestica	MD09G1131400.v1.1 MD17G1105700.v1.1
prunus_persica	Prupe.3G194800_v2.0.a1
pyrus_communis	pycom09g05360 pycom17g10980
rosa_chinensis	RchiOBHm_Chr2g0155621
rosa_laevigata	RLG00000020849
rosa_multiflora	Rmu_sc0003971.1_g000006
rosa_roxburghii	Rroxscaffold_2G00093610
rosa_rugosa	Rorug02G0448500
rosa_samantha	Rh2AG514700 Rh2BG525500 Rh2CG499600 Rh2DG534500
rosa_wichuraiana	Rw2G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	16
AciI	CCGC	1 cut(s)	343
AcoI	YGGCCR	1 cut(s)	355
AfiI	CCNNNNNNNGG	2 cut(s)	32, 462
AgsI	TTSAA	3 cut(s)	280, 323, 394
AjnI	CCWGG	1 cut(s)	439
AluBI	AGCT	2 cut(s)	23, 276
AluI	AGCT	2 cut(s)	23, 276
Alw26I	GTCTC	3 cut(s)	11, 79, 131
AoxI	GGCC	1 cut(s)	355
ApeKI	GCWGC	1 cut(s)	283
ArsI	GACNNNNNNTTYG	2 cut(s)	288, 320
Asp700I	GAANNNNTTC	1 cut(s)	36
BalI	TGGCCA	1 cut(s)	357
BbsI	GAAGAC	2 cut(s)	138, 168
BbvI	GCAGC	1 cut(s)	295
BccI	CCATC	3 cut(s)	34, 163, 375
BciT130I	CCWGG	1 cut(s)	441
BciVI	GTATCC	1 cut(s)	131
BcoDI	GTCTC	3 cut(s)	11, 79, 131
BfaI	CTAG	1 cut(s)	216
BfuI	GTATCC	1 cut(s)	131
BisI	GCNGC	1 cut(s)	284
BlsI	GCNGC	1 cut(s)	285
Bme1390I	CCNGG	1 cut(s)	441
BmiI	GGNNCC	1 cut(s)	239
BmrFI	CCNGG	1 cut(s)	441
BmsI	GCATC	1 cut(s)	253
BpiI	GAAGAC	2 cut(s)	138, 168
BsaI	GGTCTC	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	440
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 462
Bse1I	ACTGG	1 cut(s)	404
Bse3DI	GCAATG	1 cut(s)	373
BseBI	CCWGG	1 cut(s)	441
BseDI	CCNNGG	1 cut(s)	440
BseLI	CCNNNNNNNGG	2 cut(s)	32, 462
BseMI	GCAATG	1 cut(s)	373
BseMII	CTCAG	2 cut(s)	195, 443
BseNI	ACTGG	1 cut(s)	404
BseXI	GCAGC	1 cut(s)	295
BseYI	CCCAGC	1 cut(s)	247
BshFI	GGCC	1 cut(s)	357
BslI	CCNNNNNNNGG	2 cut(s)	32, 462
BsmAI	GTCTC	3 cut(s)	11, 79, 131
BsmBI	CGTCTC	1 cut(s)	131
BsmI	GAATGC	1 cut(s)	302
BsnI	GGCC	1 cut(s)	357
Bso31I	GGTCTC	1 cut(s)	11
Bsp143I	GATC	2 cut(s)	98, 336
BspACI	CCGC	1 cut(s)	343
BspANI	GGCC	1 cut(s)	357
BspCNI	CTCAG	2 cut(s)	194, 442
BspLI	GGNNCC	1 cut(s)	239
BspTNI	GGTCTC	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	373
BsrI	ACTGG	1 cut(s)	404
BssECI	CCNNGG	1 cut(s)	440
BssMI	GATC	2 cut(s)	98, 336
Bst2UI	CCWGG	1 cut(s)	441
BstDEI	CTNAG	3 cut(s)	181, 379, 429
BstKTI	GATC	2 cut(s)	101, 339
BstMAI	GTCTC	3 cut(s)	11, 79, 131
BstMBI	GATC	2 cut(s)	98, 336
BstMWI	GCNNNNNNNGC	1 cut(s)	306
BstNI	CCWGG	1 cut(s)	441
BstNSI	RCATGY	1 cut(s)	414
BstSCI	CCNGG	1 cut(s)	439
BstV1I	GCAGC	1 cut(s)	295
BstV2I	GAAGAC	2 cut(s)	138, 168
BsuI	GTATCC	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	357
CseI	GACGC	2 cut(s)	448, 458
CviAII	CATG	2 cut(s)	200, 411
CviJI	RGCY	7 cut(s)	23, 65, 137, 215, 240, 276, 357
CviKI_1	RGCY	7 cut(s)	23, 65, 137, 215, 240, 276, 357
DdeI	CTNAG	3 cut(s)	181, 379, 429
DpnI	GATC	2 cut(s)	100, 338
DpnII	GATC	2 cut(s)	98, 336
EaeI	YGGCCR	1 cut(s)	355
Eco31I	GGTCTC	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	439
Esp3I	CGTCTC	1 cut(s)	131
FaeI	CATG	2 cut(s)	203, 414
FaiI	YATR	6 cut(s)	43, 201, 243, 360, 412, 437
FatI	CATG	2 cut(s)	199, 410
FblI	GTMKAC	1 cut(s)	16
Fnu4HI	GCNGC	1 cut(s)	284
Fsp4HI	GCNGC	1 cut(s)	284
FspBI	CTAG	1 cut(s)	216
GluI	GCNGC	1 cut(s)	284
GsaI	CCCAGC	1 cut(s)	251
HaeIII	GGCC	1 cut(s)	357
HgaI	GACGC	2 cut(s)	448, 458
Hin1II	CATG	2 cut(s)	203, 414
HinfI	GANTC	4 cut(s)	164, 185, 329, 427
Hpy166II	GTNNAC	2 cut(s)	17, 58
Hpy188I	TCNGA	5 cut(s)	31, 98, 160, 184, 334
Hpy188III	TCNNGA	1 cut(s)	235
Hpy8I	GTNNAC	2 cut(s)	17, 58
Hpy99I	CGWCG	1 cut(s)	145
HpyAV	CCTTC	2 cut(s)	26, 219
HpyCH4V	TGCA	1 cut(s)	109
HpyF10VI	GCNNNNNNNGC	1 cut(s)	306
HpyF3I	CTNAG	3 cut(s)	181, 379, 429
Hsp92II	CATG	2 cut(s)	203, 414
Kzo9I	GATC	2 cut(s)	98, 336
LmnI	GCTCC	2 cut(s)	28, 237
Lsp1109I	GCAGC	1 cut(s)	295
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	2 cut(s)	100, 338
MboI	GATC	2 cut(s)	98, 336
MboII	GAAGA	2 cut(s)	138, 173
MlsI	TGGCCA	1 cut(s)	357
MluCI	AATT	2 cut(s)	252, 394
MluNI	TGGCCA	1 cut(s)	357
MlyI	GAGTC	2 cut(s)	158, 421
MnlI	CCTC	5 cut(s)	148, 188, 220, 426, 439
Mox20I	TGGCCA	1 cut(s)	357
MroXI	GAANNNNTTC	1 cut(s)	36
MscI	TGGCCA	1 cut(s)	357
Msp20I	TGGCCA	1 cut(s)	357
MspR9I	CCNGG	1 cut(s)	441
Mva1269I	GAATGC	1 cut(s)	302
MvaI	CCWGG	1 cut(s)	441
MwoI	GCNNNNNNNGC	1 cut(s)	306
NdeII	GATC	2 cut(s)	98, 336
NlaIII	CATG	2 cut(s)	203, 414
NlaIV	GGNNCC	1 cut(s)	239
NspI	RCATGY	1 cut(s)	414
PcsI	WCGNNNNNNNCGW	1 cut(s)	456
PctI	GAATGC	1 cut(s)	302
PdmI	GAANNNNTTC	1 cut(s)	36
PfeI	GAWTC	2 cut(s)	185, 329
PkrI	GCNGC	1 cut(s)	285
PleI	GAGTC	2 cut(s)	158, 421
PpsI	GAGTC	2 cut(s)	158, 421
Psp6I	CCWGG	1 cut(s)	439
PspFI	CCCAGC	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	439
PspN4I	GGNNCC	1 cut(s)	239
SatI	GCNGC	1 cut(s)	284
Sau3AI	GATC	2 cut(s)	98, 336
SchI	GAGTC	2 cut(s)	158, 421
ScrFI	CCNGG	1 cut(s)	441
SetI	ASST	4 cut(s)	25, 180, 278, 328
SfaNI	GCATC	1 cut(s)	253
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
Sse9I	AATT	2 cut(s)	252, 394
SsiI	CCGC	1 cut(s)	343
SspMI	CTAG	1 cut(s)	216
StyD4I	CCNGG	1 cut(s)	439
TasI	AATT	2 cut(s)	252, 394
TfiI	GAWTC	2 cut(s)	185, 329
TseI	GCWGC	1 cut(s)	283
TspGWI	ACGGA	1 cut(s)	113
XceI	RCATGY	1 cut(s)	414
XmiI	GTMKAC	1 cut(s)	16
XmnI	GAANNNNTTC	1 cut(s)	36
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.